Clone Sequence Records
BO06741.3prime Sequence
680 bp (679 high quality bases) assembled on 2005-12-03
> BO06741.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGCGAACGTTATCTTCATGGCGTGCG
TCGGCGTAATCTTGAAGCCCTGCAGCGCCTCCTTGGCGGCATTGCTCTGC
AACTCGGTGGTGAACTCCACAAAGGCGATGTCGTGACGATTCGGCACAAG
ACGCACCTCCTTGAAGCCGGGGAACTGATTGAACAGCATGGACAGCATCA
TCTCGTTGGTCTCCTCGGGCAGATTGGTGAGGAAGAGGATCTGGTTCGGC
GGCTGCTCGGTCTGTGCGTTCGGGTTCGAGTTCTCGGCGCTGCTCGGCTT
CTTCTTCTTGTCCTTCTTCTCATCGGTACCCGGCGCTGGTTTTGGTGGCT
TGACCTTCTTGGGGCGCTCCTTGAAGGTACCCTTTATCTTGGCCACAATA
TCCGAATCGGATTTGGAGTAGGCGATCTGCATGGGCTTGTCGTAGAACGG
GAAGCCCTGCATGGTGCGCAGGGCATTCGAAGCGCTGCCGATCTCCTTGA
AGATCACAAATGCCTGGCCGCGCATTTTGAGCGTTTTTAGGGCCACAATG
TCCAGAATTTGGCCGAATTGCGAGAAAATCGCATAGAGCGACTTCTTTAG
CTCCTCCTTCTTGATCTTCTCGTTCAGATTGTTGATGTAAATCGTTTGGT
TGGGTAGCATCTCCATGTCGACTGATAACT
BO06741.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4528-PA | 651 | snf-RA | 1..648 | 666..19 | 3240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snf-RA | 835 | CG4528-RA | 113..760 | 666..19 | 3240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5309354..5309707 | 666..313 | 1770 | 100 | Minus |
| X | 23542271 | X | 5310132..5310426 | 313..19 | 1475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:07:48 has no hits.
BO06741.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:08 Download gff for
BO06741.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-PA | 1..651 | 16..666 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:53 Download gff for
BO06741.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4528-PA | 1..651 | 16..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:56 Download gff for
BO06741.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 109..764 | 15..674 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:29:12 Download gff for
BO06741.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 109..764 | 15..674 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:29:12 Download gff for
BO06741.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5310132..5310430 | 15..313 | 99 | | Minus |
| X | 5309350..5309706 | 314..674 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:56 Download gff for
BO06741.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5203383..5203739 | 314..674 | 98 | -> | Minus |
| arm_X | 5204165..5204463 | 15..313 | 99 | | Minus |
BO06741.5prime Sequence
680 bp (679 high quality bases) assembled on 2005-12-03
> BO06741.5prime
GAAGTTATCAGTCGACATGGAGATGCTACCCAACCAAACGATTTACATCA
ACAATCTGAACGAGAAGATCAAGAAGGAGGAGCTAAAGAAGTCGCTCTAT
GCGATTTTCTCGCAATTCGGCCAAATTCTGGACATTGTGGCCCTAAAAAC
GCTCAAAATGCGCGGCCAGGCATTTGTGATCTTCAAGGAGATCGGCAGCG
CTTCGAATGCCCTGCGCACCATGCAGGGCTTCCCGTTCTACGACAAGCCC
ATGCAGATCGCCTACTCCAAATCCGATTCGGATATTGTGGCCAAGATAAA
GGGTACCTTCAAGGAGCGCCCCAAGAAGGTCAAGCCACCAAAACCAGCGC
CGGGTACCGATGAGAAGAAGGACAAGAAGAAGAAGCCGAGCAGCGCCGAG
AACTCGAACCCGAACGCACAGACCGAGCAGCCGCCGAACCAGATCCTCTT
CCTCACCAATCTGCCCGAGGAGACCAACGAGATGATGCTGTCCATGCTGT
TCAATCAGTTCCCCGGCTTCAAGGAGGTGCGTCTTGTGCCGAATCGTCAC
GACATCGCCTTTGTGGAGTTCACCACCGAGTTGCAGAGCAATGCCGCCAA
GGAGGCGCTGCAGGGCTTCAAGATTACGCCGACGCACGCCATGAAGATAA
CGTTCGCCAAGAAGGCAAGCTTTCTAGACC
BO06741.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4528-PA | 651 | snf-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snf-RA | 835 | CG4528-RA | 113..760 | 17..664 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5309354..5309707 | 17..370 | 1770 | 100 | Plus |
| X | 23542271 | X | 5310132..5310426 | 370..664 | 1475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:33:30 has no hits.
BO06741.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:09 Download gff for
BO06741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-PA | 1..651 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:54 Download gff for
BO06741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4528-PA | 1..651 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:18:49 Download gff for
BO06741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 109..764 | 9..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:25:10 Download gff for
BO06741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 109..764 | 9..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:25:10 Download gff for
BO06741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5309350..5309706 | 9..369 | 98 | -> | Plus |
| X | 5310132..5310430 | 370..668 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:18:49 Download gff for
BO06741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5203383..5203739 | 9..369 | 98 | -> | Plus |
| arm_X | 5204165..5204463 | 370..668 | 99 | | Plus |
BO06741.complete Sequence
682 bp assembled on 2007-10-17
GenBank Submission: FJ630513
> BO06741.complete
GAAGTTATCAGTCGACATGGAGATGCTACCCAACCAAACGATTTACATCA
ACAATCTGAACGAGAAGATCAAGAAGGAGGAGCTAAAGAAGTCGCTCTAT
GCGATTTTCTCGCAATTCGGCCAAATTCTGGACATTGTGGCCCTAAAAAC
GCTCAAAATGCGCGGCCAGGCATTTGTGATCTTCAAGGAGATCGGCAGCG
CTTCGAATGCCCTGCGCACCATGCAGGGCTTCCCGTTCTACGACAAGCCC
ATGCAGATCGCCTACTCCAAATCCGATTCGGATATTGTGGCCAAGATAAA
GGGTACCTTCAAGGAGCGCCCCAAGAAGGTCAAGCCACCAAAACCAGCGC
CGGGTACCGATGAGAAGAAGGACAAGAAGAAGAAGCCGAGCAGCGCCGAG
AACTCGAACCCGAACGCACAGACCGAGCAGCCGCCGAACCAGATCCTCTT
CCTCACCAATCTGCCCGAGGAGACCAACGAGATGATGCTGTCCATGCTGT
TCAATCAGTTCCCCGGCTTCAAGGAGGTGCGTCTTGTGCCGAATCGTCAC
GACATCGCCTTTGTGGAGTTCACCACCGAGTTGCAGAGCAATGCCGCCAA
GGAGGCGCTGCAGGGCTTCAAGATTACGCCGACGCACGCCATGAAGATAA
CGTTCGCCAAGAAGGCAAGCTTTCTAGACCAT
BO06741.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snf-RA | 651 | CG4528-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snf-RA | 835 | CG4528-RA | 113..760 | 17..664 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5309354..5309707 | 17..370 | 1770 | 100 | Plus |
| X | 23542271 | X | 5310132..5310426 | 370..664 | 1475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:06:25 has no hits.
BO06741.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:08 Download gff for
BO06741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 1..651 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:18 Download gff for
BO06741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 104..759 | 9..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:55 Download gff for
BO06741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 113..760 | 17..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:36 Download gff for
BO06741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 108..755 | 17..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:59 Download gff for
BO06741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 113..760 | 17..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:59 Download gff for
BO06741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5309354..5309706 | 17..369 | 100 | -> | Plus |
| X | 5310132..5310426 | 370..666 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:55 Download gff for
BO06741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5203387..5203739 | 17..369 | 100 | -> | Plus |
| arm_X | 5204165..5204459 | 370..666 | 99 | | Plus |
BO06741.pep Sequence
Translation from 16 to 682
> BO06741.pep
MEMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRG
QAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKE
RPKKVKPPKPAPGTDEKKDKKKKPSSAENSNPNAQTEQPPNQILFLTNLP
EETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQG
FKITPTHAMKITFAKKASFLDH
BO06741.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snf-PA | 216 | CG4528-PA | 1..216 | 1..216 | 1104 | 100 | Plus |
