Clone Sequence Records
BO06743.3prime Sequence
989 bp (832 high quality bases) assembled on 2005-12-03
> BO06743.3prime
ATGGTCTAGAAAGCTTGCATCTCCCGCTTTGGTGTCCAGCTTGCCGCCCT
TTTCGATAATCGACCCTAGATCCTTGAGCGACACCTCACCGGTTCCTCTT
TCCAGAGGCTGTGGCTGATTGGGACCGGGTTTCCAGCCCACAAAGTAGAT
GATTTGGAAGGTTGCAGGTATCCCCTTCTCGTTGGGCTTTGCATACAGCT
CCTGGTAGATGGCACTGGCCGCGAGCATCGTTTCTCGACTAAGATGAGCG
GGTCGATTGAATGCAGCATTGTTCTCTGCCATACCCTTGAGATCCCACAT
CAGTTCGAACATGCTGGGATAGCCGATGACCAGTTCATCGGTGTCTATTG
TCAGCATGGTGAAGCCGGCGCGATTAAGCAGGGAACCAATATCCCTAATC
TGAGTGAAGGGCGAGATGTGCGGAGATATGCCACCTTTGCGCTCCAGCTC
GGCCAATTGGAGCGAGGAGCGCAGCTCGTAGAGGGTGTCTCCACCAAACA
TGGAGGCTATAAAGACCCCATCCGGTTTCAGACTCTGCTTAATTCTGACA
AAGCAGCCCGGCAGATCATTCACCCAGTGCAGACTTAGGCTAGAGATGAC
CAGATCCAGTGAATTGTCCTCAAAATCCAGCTGCTCTTCGTCCTTAACTA
GTTTCACCATTTTCAGACCCGGAGTGCCCTGTGCCTGCTCCAGCATCGTA
GCACTGGTGTCCGTGAGCGTCAGCTGCTCCACACTCTCCGCCAGAATGTG
TCTGGACAGATAGCCGCGACTGCATCCGATATCCGCCGCCGCCTTGAACT
CCCGCTTAATGTCGAATACTCTGTCAGCCAGGCGGAAGCCGATCTCCTCC
TTCAGTAATCGTATAGTCCAACGTCTTCGCTGAGTGCGGCCCTTTCCTTT
CTGTATCTCTTGGCATTGCGGTCAAATATATGTTGCGATGTTTGGGTGAG
TGAGGATAGGGCGCGGAAGTCACATTTGACCTTTAGGGT
BO06743.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8067-PA | 1002 | CG8067-RA | 164..999 | 854..19 | 4180 | 100 | Minus |
CG8067-PA | 1002 | CG8067-RA | 32..112 | 985..905 | 355 | 97.5 | Minus |
CG8067-PA | 1002 | CG8067-RA | 118..163 | 899..854 | 230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8067-RB | 1321 | CG8067-RB | 260..1231 | 989..19 | 4745 | 99.4 | Minus |
CG8067-RA | 1146 | CG8067-RA | 85..1056 | 989..19 | 4745 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13984198..13984803 | 624..19 | 3030 | 100 | Minus |
2R | 25286936 | 2R | 13983882..13984140 | 882..625 | 1245 | 99.6 | Minus |
2R | 25286936 | 2R | 13983714..13983823 | 989..880 | 430 | 92.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:02:57 has no hits.
BO06743.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:12 Download gff for
BO06743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-PA | 28..1002 | 18..989 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:59 Download gff for
BO06743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-PA | 28..1002 | 18..989 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:33 Download gff for
BO06743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 85..1062 | 11..989 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:38 Download gff for
BO06743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 85..1062 | 11..989 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:38 Download gff for
BO06743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13983714..13983823 | 880..989 | 95 | -> | Minus |
2R | 13983885..13984140 | 625..879 | 99 | -> | Minus |
2R | 13984198..13984809 | 11..624 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:33 Download gff for
BO06743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9871219..9871328 | 880..989 | 95 | -> | Minus |
arm_2R | 9871390..9871645 | 625..879 | 99 | -> | Minus |
arm_2R | 9871703..9872314 | 11..624 | 99 | | Minus |
BO06743.5prime Sequence
857 bp (796 high quality bases) assembled on 2005-12-03
> BO06743.5prime
GAAGTTATCAGTCGACATGTTAAGAAAATTAACAAAACTATCGACCTTAA
AGGTCAAATGTGAACTCCGCGCCCTATCCTCACTCACCCAAACATCGCAA
CATATATTTGACCGCAATGCCAAGAGATTACAGAAGGAAAGGGCCGCACT
CAGCGAAGACGTTGGACTATACGATTACTTGAAGGAGGAGATCGGCTTCC
GCCTGGCTGACAGAGTATTCGACATTAAGCGGGAGTTCAAGGCGGCGGCG
GATATCGGATGCAGTCGCGGCTATCTGTCCAGACACATTCTGGCGGAGAG
TGTGGAGCAGCTGACGCTCACGGACACCAGTGCTACGATGCTGGAGCAGG
CACAGGGCACTCCGGGTCTGAAAATGGTGAAACTAGTTAAGGACGAAGAG
CAGCTGGATTTTGAGGACAATTCACTGGATCTGGTCATCTCTAGCCTAAG
TCTGCACTGGGTGAATGATCTGCCGGGCTGCTTTGTCAGAATTAAGCAGA
GTCTGAAACCGGATGGGGTCTTTATAGCCTCCATGTTTGGTGGAGACACC
CTCTACGAGCTGCGCTCCTCGCTCCAATTGGCCGAGCTGGAGCGCAAAGG
TGGCATATCTCCGCACATCTCGCCCTTCACTCAGATTAGGGATATTGGTT
CCCTGCTTAATCGCGCCGGCTTCACCATGCTGACAATAGACACCGATGAA
CTGGTCATCGGCTATCCCAGCATGTTCGAACTGATGTGGGATCTCAAGGG
TATGGCAGAGAACAATGCTGCATTCAATCGACCCGCTCATCTTAGTCGAG
AAACGATGCTCGCGGCCAGTGCCATCTACCAGGAGCTGTATGCAAAGCCC
AACGAGA
BO06743.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8067-PA | 1002 | CG8067-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8067-RB | 1321 | CG8067-RB | 233..1073 | 17..857 | 4205 | 100 | Plus |
CG8067-RA | 1146 | CG8067-RA | 58..898 | 17..857 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13984198..13984645 | 410..857 | 2240 | 100 | Plus |
2R | 25286936 | 2R | 13983882..13984140 | 151..409 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 13983687..13983823 | 17..153 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:03:08 has no hits.
BO06743.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:13 Download gff for
BO06743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:34:01 Download gff for
BO06743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:35 Download gff for
BO06743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 49..897 | 10..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:11 Download gff for
BO06743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 49..897 | 10..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:11 Download gff for
BO06743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13983678..13983823 | 10..153 | 97 | -> | Plus |
2R | 13983885..13984140 | 154..409 | 100 | -> | Plus |
2R | 13984198..13984644 | 410..856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:35 Download gff for
BO06743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9871183..9871328 | 10..153 | 97 | -> | Plus |
arm_2R | 9871390..9871645 | 154..409 | 100 | -> | Plus |
arm_2R | 9871703..9872149 | 410..856 | 100 | | Plus |
BO06743.complete Sequence
1033 bp (1033 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630514
> BO06743.complete
GAAGTTATCAGTCGACATGTTAAGAAAATTAACAAAACTATCGACCTTAA
AGGTCAAATGTGAACTCCGCGCCCTATCCTCACTCACCCAAACATCGCAA
CATATATTTGACCGCAATGCCAAGAGATTACAGAAGGAAAGGGCCGCACT
CAGCGAAGACGTTGGACTATACGATTACTTGAAGGAGGAGATCGGCTTCC
GCCTGGCTGACAGAGTATTCGACATTAAGCGGGAGTTCAAGGCGGCGGCG
GATATCGGATGCAGTCGCGGCTATCTGTCCAGACACATTCTGGCGGAGAG
TGTGGAGCAGCTGACGCTCACGGACACCAGTGCTACGATGCTGGAGCAGG
CACAGGGCACTCCGGGTCTGAAAATGGTGAAACTAGTTAAGGACGAAGAG
CAGCTGGATTTTGAGGACAATTCACTGGATCTGGTCATCTCTAGCCTAAG
TCTGCACTGGGTGAATGATCTGCCGGGCTGCTTTGTCAGAATTAAGCAGA
GTCTGAAACCGGATGGGGTCTTTATAGCCTCCATGTTTGGTGGAGACACC
CTCTACGAGCTGCGCTCCTCGCTCCAATTGGCCGAGCTGGAGCGCAAAGG
TGGCATATCTCCGCACATCTCGCCCTTCACTCAGATTAGGGATATTGGTT
CCCTGCTTAATCGCGCCGGCTTCACCATGCTGACAATAGACACCGATGAA
CTGGTCATCGGCTATCCCAGCATGTTCGAACTGATGTGGGATCTCAAGGG
TATGGCAGAGAACAATGCTGCATTCAATCGACCCGCTCATCTTAGTCGAG
AAACGATGCTCGCGGCCAGTGCCATCTACCAGGAGCTGTATGCAAAGCCC
AACGAGAAGGGGATACCTGCAACCTTCCAAATCATCTACTTTGTGGGCTG
GAAACCCGGTCCCAATCAGCCACAGCCTCTGGAAAGAGGAACCGGTGAGG
TGTCGCTCAAGGATCTAGGGTCGATTATCGAAAAGGGCGGCAAGCTGGAC
ACCAAAGCGGGAGATGCAAGCTTTCTAGACCAT
BO06743.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8067-RB | 1002 | CG8067-PB | 1..999 | 17..1015 | 4995 | 100 | Plus |
CG8067-RA | 1002 | CG8067-PA | 1..999 | 17..1015 | 4995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8067-RB | 1321 | CG8067-RB | 233..1231 | 17..1015 | 4995 | 100 | Plus |
CG8067-RA | 1146 | CG8067-RA | 58..1056 | 17..1015 | 4995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13984198..13984803 | 410..1015 | 3030 | 100 | Plus |
2R | 25286936 | 2R | 13983882..13984140 | 151..409 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 13983687..13983823 | 17..153 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:08:11 has no hits.
BO06743.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:37 Download gff for
BO06743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 1..1002 | 17..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:59 Download gff for
BO06743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 27..1040 | 10..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:06 Download gff for
BO06743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 63..1056 | 22..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:37 Download gff for
BO06743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 27..1040 | 10..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:36 Download gff for
BO06743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8067-RA | 63..1056 | 22..1017 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:36 Download gff for
BO06743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13983885..13984140 | 154..409 | 100 | -> | Plus |
2R | 13983692..13983823 | 22..153 | 100 | -> | Plus |
2R | 13984198..13984803 | 410..1017 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:06 Download gff for
BO06743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9871197..9871328 | 22..153 | 100 | -> | Plus |
arm_2R | 9871390..9871645 | 154..409 | 100 | -> | Plus |
arm_2R | 9871703..9872308 | 410..1017 | 99 | | Plus |
BO06743.pep Sequence
Translation from 16 to 1033
> BO06743.pep
MLRKLTKLSTLKVKCELRALSSLTQTSQHIFDRNAKRLQKERAALSEDVG
LYDYLKEEIGFRLADRVFDIKREFKAAADIGCSRGYLSRHILAESVEQLT
LTDTSATMLEQAQGTPGLKMVKLVKDEEQLDFEDNSLDLVISSLSLHWVN
DLPGCFVRIKQSLKPDGVFIASMFGGDTLYELRSSLQLAELERKGGISPH
ISPFTQIRDIGSLLNRAGFTMLTIDTDELVIGYPSMFELMWDLKGMAENN
AAFNRPAHLSRETMLAASAIYQELYAKPNEKGIPATFQIIYFVGWKPGPN
QPQPLERGTGEVSLKDLGSIIEKGGKLDTKAGDASFLDH
BO06743.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8067-PB | 333 | CG8067-PB | 1..333 | 1..333 | 1695 | 100 | Plus |
CG8067-PA | 333 | CG8067-PA | 1..333 | 1..333 | 1695 | 100 | Plus |