Clone BO06744 Report

Search the DGRC for BO06744

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG1115-RA
Protein status:BO06744.pep: validated full length
Sequenced Size:676

Clone Sequence Records

BO06744.3prime Sequence

674 bp (673 high quality bases) assembled on 2005-12-03

> BO06744.3prime
ATGGTCTAGAAAGCTTGCGTACGGTCTGGATGGCGGTGGCATGGGCATCA
GGGGACCCATGATTGGGTAAGGGGCGGAGCCCCCAGACGCGGGATAGAAT
CCGCTGGAGGGCACGTTTCCGTAGGCTGGCAGAGAAGTATTTGGGCCCGG
ACCCTGGCGCTGTTTGCGCATCAGCTCCTGCATTTTTTCGGCCTTGAGGC
GACGCAGGTGCATGGTCCTCCGGATAGGGAGGAACGCGTCCAGAAAGTCC
TCCACGCCGATATCGCTGTCGTTGAACTTCTTGACCATCTCCTCGGTCTG
CTCCTCGCTCTCGGAGGCAGCTGTCTGCAGCAGGGCCAGCGCCGTTTCAA
GGCCCACTCCGCCCGACTTCTCCTTGAGCTGTGAGAGTTTCTCCTGGACA
GAGGAGCACCTGGTGCGCCCATCCTCCGAGAGTTCTGCCAGCTGCCCCCG
CAGCTCGATGATCTGCGGCTCCCGCTCGATATTGCGCTCCGCCCGACTCC
TGTTGTCCTCGAAAACACTGGTCTTTTGTGTTCGGAGCACCTGGAGAACT
TCGTCAACCTTCTCGTCCAGCTTGTCGTCATCGTTCAGCAGTTCCTTCAG
CTCCTCGTGGCACATCGGGGTGATGGTGGCCCGCAGTTGGTATAGGTATT
CCTGGTACATGTCGACTGATAACT

BO06744.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1115-PA 645 CG1115-RA 1..642 660..19 3210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Vps37B-RC 1041 CG1115-RC 113..754 660..19 3210 100 Minus
Vps37B-RB 975 CG1115-RB 113..754 660..19 3210 100 Minus
Vps37B-RA 1024 CG1115-RA 113..754 660..19 3210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5226270..5226911 660..19 3210 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:59:16 has no hits.

BO06744.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:14 Download gff for BO06744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1115-PA 1..645 16..660 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:34:02 Download gff for BO06744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1115-PA 1..645 16..660 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:45:12 Download gff for BO06744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1115-RA 104..763 11..669 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:46 Download gff for BO06744.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps37B-RA 104..763 11..669 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:46 Download gff for BO06744.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5226261..5226915 14..669 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:45:12 Download gff for BO06744.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1051983..1052637 14..669 99 -> Minus

BO06744.5prime Sequence

674 bp (673 high quality bases) assembled on 2005-12-03

> BO06744.5prime
GAAGTTATCAGTCGACATGTACCAGGAATACCTATACCAACTGCGGGCCA
CCATCACCCCGATGTGCCACGAGGAGCTGAAGGAACTGCTGAACGATGAC
GACAAGCTGGACGAGAAGGTTGACGAAGTTCTCCAGGTGCTCCGAACACA
AAAGACCAGTGTTTTCGAGGACAACAGGAGTCGGGCGGAGCGCAATATCG
AGCGGGAGCCGCAGATCATCGAGCTGCGGGGGCAGCTGGCAGAACTCTCG
GAGGATGGGCGCACCAGGTGCTCCTCTGTCCAGGAGAAACTCTCACAGCT
CAAGGAGAAGTCGGGCGGAGTGGGCCTTGAAACGGCGCTGGCCCTGCTGC
AGACAGCTGCCTCCGAGAGCGAGGAGCAGACCGAGGAGATGGTCAAGAAG
TTCAACGACAGCGATATCGGCGTGGAGGACTTTCTGGACGCGTTCCTCCC
TATCCGGAGGACCATGCACCTGCGTCGCCTCAAGGCCGAAAAAATGCAGG
AGCTGATGCGCAAACAGCGCCAGGGTCCGGGCCCAAATACTTCTCTGCCA
GCCTACGGAAACGTGCCCTCCAGCGGATTCTATCCCGCGTCTGGGGGCTC
CGCCCCTTACCCAATCATGGGTCCCCTGATGCCCATGCCACCGCCATCCA
GACCGTACGCAAGCTTTCTAGACC

BO06744.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1115-PA 645 CG1115-RA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
Vps37B-RC 1041 CG1115-RC 113..754 17..658 3210 100 Plus
Vps37B-RB 975 CG1115-RB 113..754 17..658 3210 100 Plus
Vps37B-RA 1024 CG1115-RA 113..754 17..658 3210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5226270..5226911 17..658 3210 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:21:04 has no hits.

BO06744.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:15 Download gff for BO06744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1115-PA 1..645 17..661 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:34:04 Download gff for BO06744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1115-PA 1..645 17..661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:00:44 Download gff for BO06744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1115-RA 104..763 8..666 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:33:48 Download gff for BO06744.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps37B-RA 104..763 8..666 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:33:48 Download gff for BO06744.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5226261..5226915 8..663 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:00:44 Download gff for BO06744.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1051983..1052637 8..663 99 -> Plus

BO06744.complete Sequence

676 bp (676 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630515

> BO06744.complete
GAAGTTATCAGTCGACATGTACCAGGAATACCTATACCAACTGCGGGCCA
CCATCACCCCGATGTGCCACGAGGAGCTGAAGGAACTGCTGAACGATGAC
GACAAGCTGGACGAGAAGGTTGACGAAGTTCTCCAGGTGCTCCGAACACA
AAAGACCAGTGTTTTCGAGGACAACAGGAGTCGGGCGGAGCGCAATATCG
AGCGGGAGCCGCAGATCATCGAGCTGCGGGGGCAGCTGGCAGAACTCTCG
GAGGATGGGCGCACCAGGTGCTCCTCTGTCCAGGAGAAACTCTCACAGCT
CAAGGAGAAGTCGGGCGGAGTGGGCCTTGAAACGGCGCTGGCCCTGCTGC
AGACAGCTGCCTCCGAGAGCGAGGAGCAGACCGAGGAGATGGTCAAGAAG
TTCAACGACAGCGATATCGGCGTGGAGGACTTTCTGGACGCGTTCCTCCC
TATCCGGAGGACCATGCACCTGCGTCGCCTCAAGGCCGAAAAAATGCAGG
AGCTGATGCGCAAACAGCGCCAGGGTCCGGGCCCAAATACTTCTCTGCCA
GCCTACGGAAACGTGCCCTCCAGCGGATTCTATCCCGCGTCTGGGGGCTC
CGCCCCTTACCCAATCATGGGTCCCCTGATGCCCATGCCACCGCCATCCA
GACCGTACGCAAGCTTTCTAGACCAT

BO06744.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Vps37B-RC 645 CG1115-PC 1..642 17..658 3210 100 Plus
Vps37B-RB 645 CG1115-PB 1..642 17..658 3210 100 Plus
Vps37B-RA 645 CG1115-PA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
Vps37B-RC 1041 CG1115-RC 113..754 17..658 3210 100 Plus
Vps37B-RB 975 CG1115-RB 113..754 17..658 3210 100 Plus
Vps37B-RA 1024 CG1115-RA 113..754 17..658 3210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5226270..5226911 17..658 3210 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:40:32 has no hits.

BO06744.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:38 Download gff for BO06744.complete
Subject Subject Range Query Range Percent Splice Strand
CG1115-RA 1..645 17..661 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:00 Download gff for BO06744.complete
Subject Subject Range Query Range Percent Splice Strand
CG1115-RA 102..761 8..666 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:59 Download gff for BO06744.complete
Subject Subject Range Query Range Percent Splice Strand
CG1115-RA 113..754 17..660 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:38 Download gff for BO06744.complete
Subject Subject Range Query Range Percent Splice Strand
CG1115-RA 102..761 8..666 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:00 Download gff for BO06744.complete
Subject Subject Range Query Range Percent Splice Strand
Vps37B-RA 113..754 17..660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:00 Download gff for BO06744.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5226270..5226911 17..660 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:59 Download gff for BO06744.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1051992..1052633 17..660 99   Plus

BO06744.pep Sequence

Translation from 16 to 676

> BO06744.pep
MYQEYLYQLRATITPMCHEELKELLNDDDKLDEKVDEVLQVLRTQKTSVF
EDNRSRAERNIEREPQIIELRGQLAELSEDGRTRCSSVQEKLSQLKEKSG
GVGLETALALLQTAASESEEQTEEMVKKFNDSDIGVEDFLDAFLPIRRTM
HLRRLKAEKMQELMRKQRQGPGPNTSLPAYGNVPSSGFYPASGGSAPYPI
MGPLMPMPPPSRPYASFLDH

BO06744.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Vps37B-PC 214 CG1115-PC 1..214 1..214 1097 100 Plus
Vps37B-PB 214 CG1115-PB 1..214 1..214 1097 100 Plus
Vps37B-PA 214 CG1115-PA 1..214 1..214 1097 100 Plus