Clone Sequence Records
BO06751.3prime Sequence
809 bp (808 high quality bases) assembled on 2005-12-03
> BO06751.3prime
ATGGTCTAGAAAGCTTGCCTTAATGTACTTGTCCATGAACTTCTTGTGGA
AATCGGAGCGCAGGGCGTCATTGACGAAGTGCGTCTTCTTATCGGGCGCA
GATCTGGCGCAATTCTTAAAGACCACATCATCGTCCCAGCGGCGCTTTAT
CTTTAGATCACCGCCCAGTCCAGAGGCACGTCCCGCTGCCGAGGCGGCGG
TGCCGGGCTCATAGTTCATCAGTGGATTGCCGGACAGGATGTTCTCCATG
CGTATGCGTTCGTCCTCCTGCTTCTTTTCCGACTCGCGACGCGCCGTCTC
CTGCAGACGTTCCTGCTTGATCTTCTGCAGCTCGGCCAGCAGGGCGGCAT
CATCGTCATCGGAATCGCTGTCCGAATCGGAGCTATCGTTGTCCAGCGGC
TCATCGGCGTCCATATTGGCGGCCTGCTGCTGAGCCGCCTGCTGCGCTTG
CTGCTGCCCTGCGTCCGGCTTGGAACGCTTTGCGGCACTGCTGCCACCGC
CGGCGTTGTTCGCCTCAATCGCCTTGCGTACAATGGAGGGCAGTGCCTTG
CCCGACGACGACGAAGTGGCTCCCGTTCCGGAGCGCGCCTCACGTTCGCG
CTCCTCCAGCTCCTTGCGGAAGTCACGGTTGCGGTTCTCATCGCTGGTGC
CCTGGCCAGTCTCCCTGTATTTCAGTTTCGTGTGGCCTGGCAAATCGCGA
CTGGAGTACTGCTTGCTCAGTGCACTCAGATCCTTTTCGCCGCGACCGGA
TCCTCCGCGGGCTGGATCGAAGGTCGGACGCGCTGCTGTGGTCATGTCGA
CTGATAACT
BO06751.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12135-PA | 780 | c12.1-RA | 1..777 | 795..19 | 3885 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
c12.1-RA | 1246 | CG12135-RA | 102..878 | 795..19 | 3885 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9318283..9318931 | 19..667 | 3245 | 100 | Plus |
X | 23542271 | X | 9318991..9319122 | 664..795 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:07:59 has no hits.
BO06751.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:26 Download gff for
BO06751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
c12.1-PA | 1..780 | 18..795 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:34:18 Download gff for
BO06751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12135-PA | 1..780 | 18..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:58 Download gff for
BO06751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
c12.1-RA | 94..883 | 13..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:30:30 Download gff for
BO06751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
c12.1-RA | 94..883 | 13..802 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:30:30 Download gff for
BO06751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9318278..9318928 | 13..664 | 99 | <- | Plus |
X | 9318992..9319130 | 665..802 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:58 Download gff for
BO06751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9212311..9212961 | 13..664 | 99 | <- | Plus |
arm_X | 9213025..9213163 | 665..802 | 97 | | Plus |
BO06751.5prime Sequence
809 bp (808 high quality bases) assembled on 2005-12-03
> BO06751.5prime
GAAGTTATCAGTCGACATGACCACAGCAGCGCGTCCGACCTTCGATCCAG
CCCGCGGAGGATCCGGTCGCGGCGAAAAGGATCTGAGTGCACTGAGCAAG
CAGTACTCCAGTCGCGATTTGCCAGGCCACACGAAACTGAAATACAGGGA
GACTGGCCAGGGCACCAGCGATGAGAACCGCAACCGTGACTTCCGCAAGG
AGCTGGAGGAGCGCGAACGTGAGGCGCGCTCCGGAACGGGAGCCACTTCG
TCGTCGTCGGGCAAGGCACTGCCCTCCATTGTACGCAAGGCGATTGAGGC
GAACAACGCCGGCGGTGGCAGCAGTGCCGCAAAGCGTTCCAAGCCGGACG
CAGGGCAGCAGCAAGCGCAGCAGGCGGCTCAGCAGCAGGCCGCCAATATG
GACGCCGATGAGCCGCTGGACAACGATAGCTCCGATTCGGACAGCGATTC
CGATGACGATGATGCCGCCCTGCTGGCCGAGCTGCAGAAGATCAAGCAGG
AACGTCTGCAGGAGACGGCGCGTCGCGAGTCGGAAAAGAAGCAGGAGGAC
GAACGCATACGCATGGAGAACATCCTGTCCGGCAATCCACTGATGAACTA
TGAGCCCGGCACCGCCGCCTCGGCAGCGGGACGTGCCTCTGGACTGGGCG
GTGATCTAAAGATAAAGCGCCGCTGGGACGATGATGTGGTCTTTAAGAAT
TGCGCCAGATCTGCGCCCGATAAGAAGACGCACTTCGTCAATGACGCCCT
GCGCTCCGATTTCCACAAGAAGTTCATGGACAAGTACATTAAGGCAAGCT
TTCTAGACC
BO06751.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12135-PA | 780 | c12.1-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:00:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
c12.1-RA | 1246 | CG12135-RA | 102..878 | 17..793 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9318283..9318931 | 793..145 | 3245 | 100 | Minus |
X | 23542271 | X | 9318991..9319122 | 148..17 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:00:26 has no hits.
BO06751.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:27 Download gff for
BO06751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
c12.1-PA | 1..780 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:34:19 Download gff for
BO06751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12135-PA | 1..780 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:45:18 Download gff for
BO06751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
c12.1-RA | 94..883 | 10..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:56 Download gff for
BO06751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
c12.1-RA | 94..883 | 10..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:56 Download gff for
BO06751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9318278..9318928 | 148..799 | 99 | <- | Minus |
X | 9318992..9319130 | 10..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:45:18 Download gff for
BO06751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9212311..9212961 | 148..799 | 99 | <- | Minus |
arm_X | 9213025..9213163 | 10..147 | 97 | | Minus |
BO06751.complete Sequence
811 bp (811 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630517
> BO06751.complete
GAAGTTATCAGTCGACATGACCACAGCAGCGCGTCCGACCTTCGATCCAG
CCCGCGGAGGATCCGGTCGCGGCGAAAAGGATCTGAGTGCACTGAGCAAG
CAGTACTCCAGTCGCGATTTGCCAGGCCACACGAAACTGAAATACAGGGA
GACTGGCCAGGGCACCAGCGATGAGAACCGCAACCGTGACTTCCGCAAGG
AGCTGGAGGAGCGCGAACGTGAGGCGCGCTCCGGAACGGGAGCCACTTCG
TCGTCGTCGGGCAAGGCACTGCCCTCCATTGTACGCAAGGCGATTGAGGC
GAACAACGCCGGCGGTGGCAGCAGTGCCGCAAAGCGTTCCAAGCCGGACG
CAGGGCAGCAGCAAGCGCAGCAGGCGGCTCAGCAGCAGGCCGCCAATATG
GACGCCGATGAGCCGCTGGACAACGATAGCTCCGATTCGGACAGCGATTC
CGATGACGATGATGCCGCCCTGCTGGCCGAGCTGCAGAAGATCAAGCAGG
AACGTCTGCAGGAGACGGCGCGTCGCGAGTCGGAAAAGAAGCAGGAGGAC
GAACGCATACGCATGGAGAACATCCTGTCCGGCAATCCACTGATGAACTA
TGAGCCCGGCACCGCCGCCTCGGCAGCGGGACGTGCCTCTGGACTGGGCG
GTGATCTAAAGATAAAGCGCCGCTGGGACGATGATGTGGTCTTTAAGAAT
TGCGCCAGATCTGCGCCCGATAAGAAGACGCACTTCGTCAATGACGCCCT
GCGCTCCGATTTCCACAAGAAGTTCATGGACAAGTACATTAAGGCAAGCT
TTCTAGACCAT
BO06751.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
c12.1-RA | 780 | CG12135-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
c12.1-RA | 1246 | CG12135-RA | 102..878 | 17..793 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:46:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9318283..9318931 | 793..145 | 3245 | 100 | Minus |
X | 23542271 | X | 9318991..9319122 | 148..17 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:46:35 has no hits.
BO06751.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:08 Download gff for
BO06751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
c12.1-RA | 1..780 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:03 Download gff for
BO06751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
c12.1-RA | 115..904 | 10..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:37 Download gff for
BO06751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
c12.1-RA | 102..878 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:08 Download gff for
BO06751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
c12.1-RA | 115..904 | 10..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:56 Download gff for
BO06751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
c12.1-RA | 102..878 | 17..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:56 Download gff for
BO06751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9318281..9318928 | 148..795 | 99 | <- | Minus |
X | 9318992..9319122 | 17..147 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:37 Download gff for
BO06751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9212314..9212961 | 148..795 | 99 | <- | Minus |
arm_X | 9213025..9213155 | 17..147 | 100 | | Minus |
BO06751.pep Sequence
Translation from 16 to 811
> BO06751.pep
MTTAARPTFDPARGGSGRGEKDLSALSKQYSSRDLPGHTKLKYRETGQGT
SDENRNRDFRKELEEREREARSGTGATSSSSGKALPSIVRKAIEANNAGG
GSSAAKRSKPDAGQQQAQQAAQQQAANMDADEPLDNDSSDSDSDSDDDDA
ALLAELQKIKQERLQETARRESEKKQEDERIRMENILSGNPLMNYEPGTA
ASAAGRASGLGGDLKIKRRWDDDVVFKNCARSAPDKKTHFVNDALRSDFH
KKFMDKYIKASFLDH
BO06751.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
c12.1-PA | 259 | CG12135-PA | 1..259 | 1..259 | 1319 | 100 | Plus |