Clone Sequence Records
BO06753.3prime Sequence
875 bp (786 high quality bases) assembled on 2005-12-03
> BO06753.3prime
ATGGTCTAGAAAGCTTGCGACACTTTGGATTCCCGACTCAGGACACGCAG
AACCGCAGTTGGGGCAGCAGAAACTGGCATCCGTTAAAACATTTGCATTA
AGGCAGTAATAGCAATAAATATGACCACAGCCCATGTGGTGGGGCAATGT
GGGTCGCTCTCCACAGAATGTGCAGGTGGTGCTTAGTGTCATCTGCGGCG
CCAGGAAAGCCGGACCATCTCTATCCTCTAACCGTCGTCCGGAAAATGTC
CATGATTTTAGCACTCTTTGTAGCTTACGGAAATTGATGATGGGCAACAC
CAGTCCGAGGATTTCCATAAATCCTCCCCACAGCAGCTCCCTCGTTAGGT
ACTTGTAGCCAATGTCTCTCCTTTGATTGTTCCGCAGACTAATGTAGTCC
AATCCCAATAAGTAGTCCACCAAAGTGGGTTTTCGTCCTGTCTTCAGGAA
CCGAAAGTAATTGAGGATGTTCAGTATCAGGGCACTGTTCTCCACCCACA
TAATCGCCTCGCTAAACCATTCTACGCGCCTTGTTAAGCGTCGCTCCTCC
CAGCTCTTCACGTAGCCCGGCAAGACGGTCAGGATGAAATGGAGCACCAG
CCTGGAAACGGTCAGCTTTTCGGCATCGTAAGCCAGAACCAGTAGCTGTT
GGCCAAAAGTGGAGCACCGCTTGCCGACGGAACCAAACCAAATTGCGGAT
TGAATGATCAAGTCGAGCTCCGGTTGGATTTTGATGAACAAAACGGGTGA
GATGGCTTGCAAGTTCTCCAGCAGATTATCGCGTATCAGGCGGGCAATGT
CCTTGTTCAAATAGATGGCATCTATCTGATTTACACGTGGTACATATTTG
TTTTTCTCCATGTCGACTGATAACT
BO06753.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7081-PA | 846 | CG7081-RA | 1..843 | 861..19 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex2-RA | 1051 | CG7081-RA | 105..947 | 861..19 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8339390..8339822 | 747..315 | 2165 | 100 | Minus |
3L | 28110227 | 3L | 8339875..8340172 | 316..19 | 1490 | 100 | Minus |
3L | 28110227 | 3L | 8339255..8339334 | 827..748 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:00:38 has no hits.
BO06753.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:30 Download gff for
BO06753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7081-PA | 1..846 | 16..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:34:23 Download gff for
BO06753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7081-PA | 1..846 | 16..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:45:20 Download gff for
BO06753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex2-RA | 105..947 | 19..861 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:57 Download gff for
BO06753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex2-RA | 105..947 | 19..861 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:57 Download gff for
BO06753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8339155..8339190 | 826..861 | 100 | -> | Minus |
3L | 8339257..8339334 | 748..825 | 100 | -> | Minus |
3L | 8339390..8339821 | 316..747 | 100 | -> | Minus |
3L | 8339876..8340172 | 19..315 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:45:20 Download gff for
BO06753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8332255..8332290 | 826..861 | 100 | -> | Minus |
arm_3L | 8332357..8332434 | 748..825 | 100 | -> | Minus |
arm_3L | 8332490..8332921 | 316..747 | 100 | -> | Minus |
arm_3L | 8332976..8333272 | 19..315 | 100 | | Minus |
BO06753.5prime Sequence
874 bp (776 high quality bases) assembled on 2005-12-03
> BO06753.5prime
GAAGTTATCAGTCGACATGGAGAAAAACAAATATGTACCACGTGTAAATC
AGATAGATGCCATCTATTTGAACAAGGACATTGCCCGCCTGATACGCGAT
AATCTGCTGGAGAACTTGCAAGCCATCTCACCCGTTTTGTTCATCAAAAT
CCAACCGGAGCTCGACTTGATCATTCAATCCGCAATTTGGTTTGGTTCCG
TCGGCAAGCGGTGCTCCACTTTTGGCCAACAGCTACTGGTTCTGGCTTAC
GATGCCGAAAAGCTGACCGTTTCCAGGCTGGTGCTCCATTTCATCCTGAC
CGTCTTGCCGGGCTACGTGAAGAGCTGGGAGGAGCGACGCTTAACAAGGC
GCGTAGAATGGTTTAGCGAGGCGATTATGTGGGTGGAGAACAGTGCCCTG
ATACTGAACATCCTCAATTACTTTCGGTTCCTGAAGACAGGACGAAAACC
CACTTTGGTGGACTACTTATTGGGATTGGACTACATTAGTCTGCGGAACA
ATCAAAGGAGAGACATTGGCTACAAGTACCTAACGAGGGAGCTGCTGTGG
GGAGGATTTATGGAAATCCTCGGACTGGTGTTGCCCATCATCAATTTCCG
TAAGCTACAAAGAGTGCTAAAATCATGGACATTTTCCGGACGACGGTTAG
AGGATAGAGATGGTCCGGCTTTCCTGGCGCCGCAGATGACACTAAGCACC
ACCTGCACATTCTGTGGAGAGCGACCCACATTGCCCCACCACATGGGCTG
TGGTCATATTTATTGCTATTACTGCCTTAATGCAAATGTTTTAACGGATG
CCAGTTTCTGCTGCCCCAACTGCGGTTCTGCGTGTCCTGAGTCGGGATCC
AAAGTGTCGCAAGCTTTCTAGACC
BO06753.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7081-PA | 846 | CG7081-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:21:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex2-RA | 1051 | CG7081-RA | 105..947 | 17..858 | 4190 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8339390..8339822 | 131..563 | 2165 | 100 | Plus |
3L | 28110227 | 3L | 8339875..8340172 | 562..858 | 1440 | 99.7 | Plus |
3L | 28110227 | 3L | 8339255..8339334 | 51..130 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:21:44 has no hits.
BO06753.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:31 Download gff for
BO06753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7081-PA | 1..846 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:34:24 Download gff for
BO06753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7081-PA | 1..846 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:00:52 Download gff for
BO06753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex2-RA | 105..947 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:34:15 Download gff for
BO06753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex2-RA | 105..947 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:34:15 Download gff for
BO06753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8339155..8339190 | 17..52 | 100 | -> | Plus |
3L | 8339257..8339334 | 53..130 | 100 | -> | Plus |
3L | 8339390..8339821 | 131..562 | 100 | -> | Plus |
3L | 8339876..8340172 | 563..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:00:52 Download gff for
BO06753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8332255..8332290 | 17..52 | 100 | -> | Plus |
arm_3L | 8332357..8332434 | 53..130 | 100 | -> | Plus |
arm_3L | 8332490..8332921 | 131..562 | 100 | -> | Plus |
arm_3L | 8332976..8333272 | 563..858 | 99 | | Plus |
BO06753.complete Sequence
877 bp (877 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630518
> BO06753.complete
GAAGTTATCAGTCGACATGGAGAAAAACAAATATGTACCACGTGTAAATC
AGATAGATGCCATCTATTTGAACAAGGACATTGCCCGCCTGATACGCGAT
AATCTGCTGGAGAACTTGCAAGCCATCTCACCCGTTTTGTTCATCAAAAT
CCAACCGGAGCTCGACTTGATCATTCAATCCGCAATTTGGTTTGGTTCCG
TCGGCAAGCGGTGCTCCACTTTTGGCCAACAGCTACTGGTTCTGGCTTAC
GATGCCGAAAAGCTGACCGTTTCCAGGCTGGTGCTCCATTTCATCCTGAC
CGTCTTGCCGGGCTACGTGAAGAGCTGGGAGGAGCGACGCTTAACAAGGC
GCGTAGAATGGTTTAGCGAGGCGATTATGTGGGTGGAGAACAGTGCCCTG
ATACTGAACATCCTCAATTACTTTCGGTTCCTGAAGACAGGACGAAAACC
CACTTTGGTGGACTACTTATTGGGATTGGACTACATTAGTCTGCGGAACA
ATCAAAGGAGAGACATTGGCTACAAGTACCTAACGAGGGAGCTGCTGTGG
GGAGGATTTATGGAAATCCTCGGACTGGTGTTGCCCATCATCAATTTCCG
TAAGCTACAAAGAGTGCTAAAATCATGGACATTTTCCGGACGACGGTTAG
AGGATAGAGATGGTCCGGCTTTCCTGGCGCCGCAGATGACACTAAGCACC
ACCTGCACATTCTGTGGAGAGCGACCCACATTGCCCCACCACATGGGCTG
TGGTCATATTTATTGCTATTACTGCCTTAATGCAAATGTTTTAACGGATG
CCAGTTTCTGCTGCCCCAACTGCGGTTCTGCGTGTCCTGAGTCGGGAATC
CAAAGTGTCGCAAGCTTTCTAGACCAT
BO06753.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex2-RA | 846 | CG7081-PA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex2-RA | 1051 | CG7081-RA | 105..947 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8339390..8339822 | 131..563 | 2165 | 100 | Plus |
3L | 28110227 | 3L | 8339875..8340172 | 562..859 | 1490 | 100 | Plus |
3L | 28110227 | 3L | 8339255..8339334 | 51..130 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:51:59 has no hits.
BO06753.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:23 Download gff for
BO06753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7081-RA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:40 Download gff for
BO06753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7081-RA | 103..945 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:53 Download gff for
BO06753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex2-RA | 105..947 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:23 Download gff for
BO06753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7081-RA | 103..945 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:48 Download gff for
BO06753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex2-RA | 105..947 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:48 Download gff for
BO06753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8339155..8339190 | 17..52 | 100 | -> | Plus |
3L | 8339257..8339334 | 53..130 | 100 | -> | Plus |
3L | 8339390..8339821 | 131..562 | 100 | -> | Plus |
3L | 8339876..8340172 | 563..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:53 Download gff for
BO06753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8332255..8332290 | 17..52 | 100 | -> | Plus |
arm_3L | 8332357..8332434 | 53..130 | 100 | -> | Plus |
arm_3L | 8332490..8332921 | 131..562 | 100 | -> | Plus |
arm_3L | 8332976..8333272 | 563..861 | 99 | | Plus |
BO06753.pep Sequence
Translation from 16 to 877
> BO06753.pep
MEKNKYVPRVNQIDAIYLNKDIARLIRDNLLENLQAISPVLFIKIQPELD
LIIQSAIWFGSVGKRCSTFGQQLLVLAYDAEKLTVSRLVLHFILTVLPGY
VKSWEERRLTRRVEWFSEAIMWVENSALILNILNYFRFLKTGRKPTLVDY
LLGLDYISLRNNQRRDIGYKYLTRELLWGGFMEILGLVLPIINFRKLQRV
LKSWTFSGRRLEDRDGPAFLAPQMTLSTTCTFCGERPTLPHHMGCGHIYC
YYCLNANVLTDASFCCPNCGSACPESGIQSVASFLDH
BO06753.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex2-PA | 281 | CG7081-PA | 1..281 | 1..281 | 1490 | 100 | Plus |