Clone Sequence Records
BO06756.3prime Sequence
797 bp (796 high quality bases) assembled on 2005-12-03
> BO06756.3prime
ATGGTCTAGAAAGCTTGCTCCGTCCAACGGCGTGCCCAGATAGACCATCG
AGACCTCGGTATTGCCGTAGACAGCGGATACTGTGGGATAGAGCTTTTTG
TCCGGCAGGCCCCGGAAGGCCACACCGAGGAACTCGTAGTTCTTCTCGAA
CGACAAGGTGTTGTCCTCGCAGTCGAGAATGACGCGTATCCGCTCGCCCA
CTTGGTACTTGGGAGCATTGTTCAGCAGCGGGTAACTGCCCTGCATGTCG
CCGTTGTGCAGCAGGTGGTTCTCGACCAGATTCCAGCCCCAGCTCTGGTC
GTCGGAGCCGAGCAGAGCCACATAGCCGTGACACTGTAGAGCCGCCTCCT
TGGTAGATATGCCGATGACGGCCACAGTGCCCAGCGGTCCCTCCCATATC
ACCTCCCAGGTGTGACGACCGTGGCGGAATCCTATCTTGCCCCGGGCCGC
GTCTGTGCTCTGCGCCACGGGATTGCGATGCAGGGTGAATCCGTTCGGCT
TAATGTACACATTCCTCGAACAGTCGTTGGGGCTCCAGGCGTGAAAATAG
GCCCGCAGCTTCGTCTTGTACGTGGAGACGGAGGCCAGCAGGTCCGATTT
GAGGGACTCCTTGGGCAGCTTGTTCAGGCAGTGCCAGCGCCAGACGTCGC
TGTTCTCGTCGTTGAGGAAGTGGTACCAACTTTTGCACACCTGCGAGCAA
TGACTGAGGTCGTCCAGCTCCAGGTAGGAGAAGATTACCTCCAGCACATT
GTAATTGCACAGCGCCGCCACCGGATCGACCATGTCGACTGATAACT
BO06756.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4643-PB | 768 | CG4643-RB | 1..765 | 783..19 | 3825 | 100 | Minus |
| CG4643-PA | 768 | CG4643-RA | 1..765 | 783..19 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fsn-RA | 1287 | CG4643-RA | 177..941 | 783..19 | 3825 | 100 | Minus |
| Fsn-RB | 1280 | CG4643-RB | 170..934 | 783..19 | 3825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13221439..13221805 | 110..476 | 1835 | 100 | Plus |
| 2R | 25286936 | 2R | 13221862..13222169 | 476..783 | 1540 | 100 | Plus |
| 2R | 25286936 | 2R | 13221285..13221377 | 19..111 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:45:05 has no hits.
BO06756.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:36 Download gff for
BO06756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4643-PA | 1..768 | 18..783 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:34:31 Download gff for
BO06756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4643-PA | 1..768 | 18..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:24 Download gff for
BO06756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fsn-RB | 164..946 | 5..791 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:19 Download gff for
BO06756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fsn-RB | 164..946 | 5..791 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:19 Download gff for
BO06756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13221273..13221376 | 5..110 | 95 | <- | Plus |
| 2R | 13221440..13221804 | 111..475 | 100 | <- | Plus |
| 2R | 13221862..13222173 | 476..791 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:24 Download gff for
BO06756.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9109367..9109678 | 476..791 | 98 | | Plus |
| arm_2R | 9108778..9108881 | 5..110 | 95 | <- | Plus |
| arm_2R | 9108945..9109309 | 111..475 | 100 | <- | Plus |
BO06756.5prime Sequence
797 bp (796 high quality bases) assembled on 2005-12-03
> BO06756.5prime
GAAGTTATCAGTCGACATGGTCGATCCGGTGGCGGCGCTGTGCAATTACA
ATGTGCTGGAGGTAATCTTCTCCTACCTGGAGCTGGACGACCTCAGTCAT
TGCTCGCAGGTGTGCAAAAGTTGGTACCACTTCCTCAACGACGAGAACAG
CGACGTCTGGCGCTGGCACTGCCTGAACAAGCTGCCCAAGGAGTCCCTCA
AATCGGACCTGCTGGCCTCCGTCTCCACGTACAAGACGAAGCTGCGGGCC
TATTTTCACGCCTGGAGCCCCAACGACTGTTCGAGGAATGTGTACATTAA
GCCGAACGGATTCACCCTGCATCGCAATCCCGTGGCGCAGAGCACAGACG
CGGCCCGGGGCAAGATAGGATTCCGCCACGGTCGTCACACCTGGGAGGTG
ATATGGGAGGGACCGCTGGGCACTGTGGCCGTCATCGGCATATCTACCAA
GGAGGCGGCTCTACAGTGTCACGGCTATGTGGCTCTGCTCGGCTCCGACG
ACCAGAGCTGGGGCTGGAATCTGGTCGAGAACCACCTGCTGCACAACGGC
GACATGCAGGGCAGTTACCCGCTGCTGAACAATGCTCCCAAGTACCAAGT
GGGCGAGCGGATACGCGTCATTCTCGACTGCGAGGACAACACCTTGTCGT
TCGAGAAGAACTACGAGTTCCTCGGTGTGGCCTTCCGGGGCCTGCCGGAC
AAAAAGCTCTATCCCACAGTATCCGCTGTCTACGGCAATACCGAGGTCTC
GATGGTCTATCTGGGCACGCCGTTGGACGGAGCAAGCTTTCTAGACC
BO06756.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4643-PB | 768 | CG4643-RB | 1..765 | 17..781 | 3825 | 100 | Plus |
| CG4643-PA | 768 | CG4643-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fsn-RA | 1287 | CG4643-RA | 177..941 | 17..781 | 3825 | 100 | Plus |
| Fsn-RB | 1280 | CG4643-RB | 170..934 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13221439..13221805 | 690..324 | 1835 | 100 | Minus |
| 2R | 25286936 | 2R | 13221862..13222169 | 324..17 | 1540 | 100 | Minus |
| 2R | 25286936 | 2R | 13221285..13221377 | 781..689 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:03:35 has no hits.
BO06756.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:37 Download gff for
BO06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4643-PA | 1..768 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:34:32 Download gff for
BO06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4643-PA | 1..768 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:40 Download gff for
BO06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fsn-RB | 164..946 | 9..795 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:03 Download gff for
BO06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fsn-RB | 164..946 | 9..795 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:03 Download gff for
BO06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13221273..13221376 | 690..795 | 95 | <- | Minus |
| 2R | 13221440..13221804 | 325..689 | 100 | <- | Minus |
| 2R | 13221862..13222173 | 9..324 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:40 Download gff for
BO06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9108778..9108881 | 690..795 | 95 | <- | Minus |
| arm_2R | 9108945..9109309 | 325..689 | 100 | <- | Minus |
| arm_2R | 9109367..9109678 | 9..324 | 98 | | Minus |
BO06756.complete Sequence
799 bp (799 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630519
> BO06756.complete
GAAGTTATCAGTCGACATGGTCGATCCGGTGGCGGCGCTGTGCAATTACA
ATGTGCTGGAGGTAATCTTCTCCTACCTGGAGCTGGACGACCTCAGTCAT
TGCTCGCAGGTGTGCAAAAGTTGGTACCACTTCCTCAACGACGAGAACAG
CGACGTCTGGCGCTGGCACTGCCTGAACAAGCTGCCCAAGGAGTCCCTCA
AATCGGACCTGCTGGCCTCCGTCTCCACGTACAAGACGAAGCTGCGGGCC
TATTTTCACGCCTGGAGCCCCAACGACTGTTCGAGGAATGTGTACATTAA
GCCGAACGGATTCACCCTGCATCGCAATCCCGTGGCGCAGAGCACAGACG
CGGCCCGGGGCAAGATAGGATTCCGCCACGGTCGTCACACCTGGGAGGTG
ATATGGGAGGGACCGCTGGGCACTGTGGCCGTCATCGGCATATCTACCAA
GGAGGCGGCTCTACAGTGTCACGGCTATGTGGCTCTGCTCGGCTCCGACG
ACCAGAGCTGGGGCTGGAATCTGGTCGAGAACCACCTGCTGCACAACGGC
GACATGCAGGGCAGTTACCCGCTGCTGAACAATGCTCCCAAGTACCAAGT
GGGCGAGCGGATACGCGTCATTCTCGACTGCGAGGACAACACCTTGTCGT
TCGAGAAGAACTACGAGTTCCTCGGTGTGGCCTTCCGGGGCCTGCCGGAC
AAAAAGCTCTATCCCACAGTATCCGCTGTCTACGGCAATACCGAGGTCTC
GATGGTCTATCTGGGCACGCCGTTGGACGGAGCAAGCTTTCTAGACCAT
BO06756.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fsn-RA | 768 | CG4643-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
| Fsn-RB | 768 | CG4643-PB | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fsn-RA | 1287 | CG4643-RA | 177..941 | 17..781 | 3825 | 100 | Plus |
| Fsn-RB | 1280 | CG4643-RB | 170..934 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13221439..13221805 | 690..324 | 1835 | 100 | Minus |
| 2R | 25286936 | 2R | 13221862..13222169 | 324..17 | 1540 | 100 | Minus |
| 2R | 25286936 | 2R | 13221285..13221377 | 781..689 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:24:08 has no hits.
BO06756.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:24 Download gff for
BO06756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4643-RA | 1..768 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:42 Download gff for
BO06756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4643-RA | 226..1008 | 9..795 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:54 Download gff for
BO06756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fsn-RB | 170..934 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:24 Download gff for
BO06756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4643-RA | 226..1008 | 9..795 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:12 Download gff for
BO06756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fsn-RB | 170..934 | 17..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:12 Download gff for
BO06756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13221440..13221804 | 325..689 | 100 | <- | Minus |
| 2R | 13221862..13222169 | 17..324 | 100 | | Minus |
| 2R | 13221281..13221376 | 690..783 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:54 Download gff for
BO06756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9108786..9108881 | 690..783 | 97 | <- | Minus |
| arm_2R | 9108945..9109309 | 325..689 | 100 | <- | Minus |
| arm_2R | 9109367..9109674 | 17..324 | 100 | | Minus |
BO06756.pep Sequence
Translation from 16 to 799
> BO06756.pep
MVDPVAALCNYNVLEVIFSYLELDDLSHCSQVCKSWYHFLNDENSDVWRW
HCLNKLPKESLKSDLLASVSTYKTKLRAYFHAWSPNDCSRNVYIKPNGFT
LHRNPVAQSTDAARGKIGFRHGRHTWEVIWEGPLGTVAVIGISTKEAALQ
CHGYVALLGSDDQSWGWNLVENHLLHNGDMQGSYPLLNNAPKYQVGERIR
VILDCEDNTLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNTEVSMVYLG
TPLDGASFLDH
BO06756.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fsn-PA | 255 | CG4643-PA | 1..255 | 1..255 | 1395 | 100 | Plus |
| Fsn-PB | 255 | CG4643-PB | 1..255 | 1..255 | 1395 | 100 | Plus |
| gus-PM | 279 | CG2944-PM | 56..230 | 81..250 | 394 | 45.7 | Plus |
| gus-PL | 279 | CG2944-PL | 56..230 | 81..250 | 394 | 45.7 | Plus |
| gus-PK | 279 | CG2944-PK | 56..230 | 81..250 | 394 | 45.7 | Plus |
