Clone BO06759 Report

Search the DGRC for BO06759

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG9796-RA
Protein status:BO06759.pep: validated full length
Sequenced Size:784

Clone Sequence Records

BO06759.3prime Sequence

782 bp (781 high quality bases) assembled on 2005-12-03

> BO06759.3prime
ATGGTCTAGAAAGCTTGCGTAGAAGGAGCGGATAAACCAAAGACCCAGCA
GGGAGCTAAGGATGGCGCTTACGCTGGCCAAAGATGGAGTCGATGCTCCG
TTGTGCTGGTTGCAGATGCGCGGCTGCGGGGCGGATACGTATTGGCAGAT
GGTGCCCACCAAGTTCACCTGGGCGCGATCATTCACCTTCTTGTCGAATT
GCTCATTGAACAGAATGGTGGGCACGCTGGTGAGTGGCTCCTTGAGCCGC
ATGGTGCTTTCGCCGGCCTTCCGGAGCAGAACGCTTCCCTCGGTGGAGTT
GGCACAGGTCTTGATGTTCTCCCAGTTATTGATGTGGTTCTCCGAGGCGC
ATCGCTGGCCGGGATAGACGTTGTCCGGGAAATTCTTGCCGGCCTTCATT
AGGCAGTTGATGAAGTCCATCGTGAGCGACTCGCGCGTGTACTCCACCTG
ATAGGAGTTGGCCTGAATGTGCTCGATGGCGCAGGCATGCACCTTATTGC
CATAGCACTCGTTCGGTCCGTGGTGGCAGGTGAACGTCACTTCGGAGCCC
TGGGTAACGAACTGAGACTTTCCGAATGGCACGAAAGTGAGTTCCACCAC
ATCGCGCAGTTCTCCCTTCACCGCCGGATATACCTGCTCCGTAATGAACT
TGGCGCTGTCCGGGCACAGGGACTCGTAGTAGATAGAAATTGGCACCTTA
GCGGCACTATAAGCCGTGGCAATCAGGCAGCTCATCAAGAGGCACACAGC
GGCGATTTTGTGACTCATGTCGACTGATAACT

BO06759.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9796-PA 753 CG9796-RA 1..750 768..19 3750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
GILT1-RA 1122 CG9796-RA 113..862 768..19 3750 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13399073..13399435 202..564 1815 100 Plus
3R 32079331 3R 13398786..13398970 19..203 925 100 Plus
3R 32079331 3R 13399510..13399646 562..698 685 100 Plus
3R 32079331 3R 13401676..13401750 694..768 375 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:21:53 has no hits.

BO06759.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:42 Download gff for BO06759.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9796-PA 1..753 15..768 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:34:40 Download gff for BO06759.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9796-PA 1..753 15..768 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:22 Download gff for BO06759.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9796-RA 113..874 7..768 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:29 Download gff for BO06759.3prime
Subject Subject Range Query Range Percent Splice Strand
GILT1-RA 113..874 7..768 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:29 Download gff for BO06759.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13398774..13398968 7..201 97 <- Plus
3R 13399073..13399432 202..561 100 <- Plus
3R 13399510..13399644 562..696 100 <- Plus
3R 13401679..13401750 697..768 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:22 Download gff for BO06759.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9224496..9224690 7..201 97 <- Plus
arm_3R 9224795..9225154 202..561 100 <- Plus
arm_3R 9225232..9225366 562..696 100 <- Plus
arm_3R 9227401..9227472 697..768 100   Plus

BO06759.5prime Sequence

782 bp (781 high quality bases) assembled on 2005-12-03

> BO06759.5prime
GAAGTTATCAGTCGACATGAGTCACAAAATCGCCGCTGTGTGCCTCTTGA
TGAGCTGCCTGATTGCCACGGCTTATAGTGCCGCTAAGGTGCCAATTTCT
ATCTACTACGAGTCCCTGTGCCCGGACAGCGCCAAGTTCATTACGGAGCA
GGTATATCCGGCGGTGAAGGGAGAACTGCGCGATGTGGTGGAACTCACTT
TCGTGCCATTCGGAAAGTCTCAGTTCGTTACCCAGGGCTCCGAAGTGACG
TTCACCTGCCACCACGGACCGAACGAGTGCTATGGCAATAAGGTGCATGC
CTGCGCCATCGAGCACATTCAGGCCAACTCCTATCAGGTGGAGTACACGC
GCGAGTCGCTCACGATGGACTTCATCAACTGCCTAATGAAGGCCGGCAAG
AATTTCCCGGACAACGTCTATCCCGGCCAGCGATGCGCCTCGGAGAACCA
CATCAATAACTGGGAGAACATCAAGACCTGTGCCAACTCCACCGAGGGAA
GCGTTCTGCTCCGGAAGGCCGGCGAAAGCACCATGCGGCTCAAGGAGCCA
CTCACCAGCGTGCCCACCATTCTGTTCAATGAGCAATTCGACAAGAAGGT
GAATGATCGCGCCCAGGTGAACTTGGTGGGCACCATCTGCCAATACGTAT
CCGCCCCGCAGCCGCGCATCTGCAACCAGCACAACGGAGCATCGACTCCA
TCTTTGGCCAGCGTAAGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTT
TATCCGCTCCTTCTACGCAAGCTTTCTAGACC

BO06759.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9796-PA 753 CG9796-RA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
GILT1-RA 1122 CG9796-RA 113..862 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13399073..13399435 583..221 1815 100 Minus
3R 32079331 3R 13398786..13398970 766..582 925 100 Minus
3R 32079331 3R 13399510..13399646 223..87 685 100 Minus
3R 32079331 3R 13401676..13401750 91..17 375 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:34:55 has no hits.

BO06759.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:43 Download gff for BO06759.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9796-PA 1..753 17..770 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:34:41 Download gff for BO06759.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9796-PA 1..753 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:19:00 Download gff for BO06759.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9796-RA 113..874 17..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:53 Download gff for BO06759.5prime
Subject Subject Range Query Range Percent Splice Strand
GILT1-RA 113..874 17..778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:53 Download gff for BO06759.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13401679..13401750 17..88 100   Minus
3R 13398774..13398968 584..778 97 <- Minus
3R 13399073..13399432 224..583 100 <- Minus
3R 13399510..13399644 89..223 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:19:00 Download gff for BO06759.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9224496..9224690 584..778 97 <- Minus
arm_3R 9224795..9225154 224..583 100 <- Minus
arm_3R 9225232..9225366 89..223 100 <- Minus
arm_3R 9227401..9227472 17..88 100   Minus

BO06759.complete Sequence

784 bp (784 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630521

> BO06759.complete
GAAGTTATCAGTCGACATGAGTCACAAAATCGCCGCTGTGTGCCTCTTGA
TGAGCTGCCTGATTGCCACGGCTTATAGTGCCGCTAAGGTGCCAATTTCT
ATCTACTACGAGTCCCTGTGCCCGGACAGCGCCAAGTTCATTACGGAGCA
GGTATATCCGGCGGTGAAGGGAGAACTGCGCGATGTGGTGGAACTCACTT
TCGTGCCATTCGGAAAGTCTCAGTTCGTTACCCAGGGCTCCGAAGTGACG
TTCACCTGCCACCACGGACCGAACGAGTGCTATGGCAATAAGGTGCATGC
CTGCGCCATCGAGCACATTCAGGCCAACTCCTATCAGGTGGAGTACACGC
GCGAGTCGCTCACGATGGACTTCATCAACTGCCTAATGAAGGCCGGCAAG
AATTTCCCGGACAACGTCTATCCCGGCCAGCGATGCGCCTCGGAGAACCA
CATCAATAACTGGGAGAACATCAAGACCTGTGCCAACTCCACCGAGGGAA
GCGTTCTGCTCCGGAAGGCCGGCGAAAGCACCATGCGGCTCAAGGAGCCA
CTCACCAGCGTGCCCACCATTCTGTTCAATGAGCAATTCGACAAGAAGGT
GAATGATCGCGCCCAGGTGAACTTGGTGGGCACCATCTGCCAATACGTAT
CCGCCCCGCAGCCGCGCATCTGCAACCAGCACAACGGAGCATCGACTCCA
TCTTTGGCCAGCGTAAGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTT
TATCCGCTCCTTCTACGCAAGCTTTCTAGACCAT

BO06759.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
GILT1-RA 753 CG9796-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
GILT1-RA 1122 CG9796-RA 113..862 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13399073..13399435 583..221 1815 100 Minus
3R 32079331 3R 13398786..13398970 766..582 925 100 Minus
3R 32079331 3R 13399510..13399646 223..87 685 100 Minus
3R 32079331 3R 13401676..13401750 91..17 375 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:12:04 has no hits.

BO06759.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:27 Download gff for BO06759.complete
Subject Subject Range Query Range Percent Splice Strand
CG9796-RA 1..753 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:45 Download gff for BO06759.complete
Subject Subject Range Query Range Percent Splice Strand
CG9796-RA 109..870 17..778 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:49 Download gff for BO06759.complete
Subject Subject Range Query Range Percent Splice Strand
CG9796-RA 113..862 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:27 Download gff for BO06759.complete
Subject Subject Range Query Range Percent Splice Strand
CG9796-RA 109..870 17..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:13 Download gff for BO06759.complete
Subject Subject Range Query Range Percent Splice Strand
GILT1-RA 113..862 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:13 Download gff for BO06759.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13399073..13399432 224..583 100 <- Minus
3R 13399510..13399644 89..223 100 <- Minus
3R 13401679..13401750 17..88 100   Minus
3R 13398784..13398968 584..768 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:49 Download gff for BO06759.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9227401..9227472 17..88 100   Minus
arm_3R 9224506..9224690 584..768 98 <- Minus
arm_3R 9224795..9225154 224..583 100 <- Minus
arm_3R 9225232..9225366 89..223 100 <- Minus

BO06759.pep Sequence

Translation from 16 to 784

> BO06759.pep
MSHKIAAVCLLMSCLIATAYSAAKVPISIYYESLCPDSAKFITEQVYPAV
KGELRDVVELTFVPFGKSQFVTQGSEVTFTCHHGPNECYGNKVHACAIEH
IQANSYQVEYTRESLTMDFINCLMKAGKNFPDNVYPGQRCASENHINNWE
NIKTCANSTEGSVLLRKAGESTMRLKEPLTSVPTILFNEQFDKKVNDRAQ
VNLVGTICQYVSAPQPRICNQHNGASTPSLASVSAILSSLLGLWFIRSFY
ASFLDH

BO06759.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
GILT1-PA 250 CG9796-PA 1..250 1..250 1320 100 Plus
CG41378-PC 196 CG41378-PC 13..160 24..185 243 34.5 Plus
CG41378-PD 205 CG41378-PD 22..169 24..185 243 34.5 Plus
CG41378-PB 228 CG41378-PB 45..192 24..185 243 34.5 Plus
CG9427-PA 213 CG9427-PA 34..196 24..208 212 33.5 Plus