Clone Sequence Records
BO06759.3prime Sequence
782 bp (781 high quality bases) assembled on 2005-12-03
> BO06759.3prime
ATGGTCTAGAAAGCTTGCGTAGAAGGAGCGGATAAACCAAAGACCCAGCA
GGGAGCTAAGGATGGCGCTTACGCTGGCCAAAGATGGAGTCGATGCTCCG
TTGTGCTGGTTGCAGATGCGCGGCTGCGGGGCGGATACGTATTGGCAGAT
GGTGCCCACCAAGTTCACCTGGGCGCGATCATTCACCTTCTTGTCGAATT
GCTCATTGAACAGAATGGTGGGCACGCTGGTGAGTGGCTCCTTGAGCCGC
ATGGTGCTTTCGCCGGCCTTCCGGAGCAGAACGCTTCCCTCGGTGGAGTT
GGCACAGGTCTTGATGTTCTCCCAGTTATTGATGTGGTTCTCCGAGGCGC
ATCGCTGGCCGGGATAGACGTTGTCCGGGAAATTCTTGCCGGCCTTCATT
AGGCAGTTGATGAAGTCCATCGTGAGCGACTCGCGCGTGTACTCCACCTG
ATAGGAGTTGGCCTGAATGTGCTCGATGGCGCAGGCATGCACCTTATTGC
CATAGCACTCGTTCGGTCCGTGGTGGCAGGTGAACGTCACTTCGGAGCCC
TGGGTAACGAACTGAGACTTTCCGAATGGCACGAAAGTGAGTTCCACCAC
ATCGCGCAGTTCTCCCTTCACCGCCGGATATACCTGCTCCGTAATGAACT
TGGCGCTGTCCGGGCACAGGGACTCGTAGTAGATAGAAATTGGCACCTTA
GCGGCACTATAAGCCGTGGCAATCAGGCAGCTCATCAAGAGGCACACAGC
GGCGATTTTGTGACTCATGTCGACTGATAACT
BO06759.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9796-PA | 753 | CG9796-RA | 1..750 | 768..19 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT1-RA | 1122 | CG9796-RA | 113..862 | 768..19 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13399073..13399435 | 202..564 | 1815 | 100 | Plus |
3R | 32079331 | 3R | 13398786..13398970 | 19..203 | 925 | 100 | Plus |
3R | 32079331 | 3R | 13399510..13399646 | 562..698 | 685 | 100 | Plus |
3R | 32079331 | 3R | 13401676..13401750 | 694..768 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:21:53 has no hits.
BO06759.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:42 Download gff for
BO06759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-PA | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:34:40 Download gff for
BO06759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-PA | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:22 Download gff for
BO06759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-RA | 113..874 | 7..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:29 Download gff for
BO06759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT1-RA | 113..874 | 7..768 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:29 Download gff for
BO06759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13398774..13398968 | 7..201 | 97 | <- | Plus |
3R | 13399073..13399432 | 202..561 | 100 | <- | Plus |
3R | 13399510..13399644 | 562..696 | 100 | <- | Plus |
3R | 13401679..13401750 | 697..768 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:22 Download gff for
BO06759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9224496..9224690 | 7..201 | 97 | <- | Plus |
arm_3R | 9224795..9225154 | 202..561 | 100 | <- | Plus |
arm_3R | 9225232..9225366 | 562..696 | 100 | <- | Plus |
arm_3R | 9227401..9227472 | 697..768 | 100 | | Plus |
BO06759.5prime Sequence
782 bp (781 high quality bases) assembled on 2005-12-03
> BO06759.5prime
GAAGTTATCAGTCGACATGAGTCACAAAATCGCCGCTGTGTGCCTCTTGA
TGAGCTGCCTGATTGCCACGGCTTATAGTGCCGCTAAGGTGCCAATTTCT
ATCTACTACGAGTCCCTGTGCCCGGACAGCGCCAAGTTCATTACGGAGCA
GGTATATCCGGCGGTGAAGGGAGAACTGCGCGATGTGGTGGAACTCACTT
TCGTGCCATTCGGAAAGTCTCAGTTCGTTACCCAGGGCTCCGAAGTGACG
TTCACCTGCCACCACGGACCGAACGAGTGCTATGGCAATAAGGTGCATGC
CTGCGCCATCGAGCACATTCAGGCCAACTCCTATCAGGTGGAGTACACGC
GCGAGTCGCTCACGATGGACTTCATCAACTGCCTAATGAAGGCCGGCAAG
AATTTCCCGGACAACGTCTATCCCGGCCAGCGATGCGCCTCGGAGAACCA
CATCAATAACTGGGAGAACATCAAGACCTGTGCCAACTCCACCGAGGGAA
GCGTTCTGCTCCGGAAGGCCGGCGAAAGCACCATGCGGCTCAAGGAGCCA
CTCACCAGCGTGCCCACCATTCTGTTCAATGAGCAATTCGACAAGAAGGT
GAATGATCGCGCCCAGGTGAACTTGGTGGGCACCATCTGCCAATACGTAT
CCGCCCCGCAGCCGCGCATCTGCAACCAGCACAACGGAGCATCGACTCCA
TCTTTGGCCAGCGTAAGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTT
TATCCGCTCCTTCTACGCAAGCTTTCTAGACC
BO06759.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9796-PA | 753 | CG9796-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT1-RA | 1122 | CG9796-RA | 113..862 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13399073..13399435 | 583..221 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 13398786..13398970 | 766..582 | 925 | 100 | Minus |
3R | 32079331 | 3R | 13399510..13399646 | 223..87 | 685 | 100 | Minus |
3R | 32079331 | 3R | 13401676..13401750 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:34:55 has no hits.
BO06759.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:58:43 Download gff for
BO06759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:34:41 Download gff for
BO06759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:19:00 Download gff for
BO06759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-RA | 113..874 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:53 Download gff for
BO06759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT1-RA | 113..874 | 17..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:53 Download gff for
BO06759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13401679..13401750 | 17..88 | 100 | | Minus |
3R | 13398774..13398968 | 584..778 | 97 | <- | Minus |
3R | 13399073..13399432 | 224..583 | 100 | <- | Minus |
3R | 13399510..13399644 | 89..223 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:19:00 Download gff for
BO06759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9224496..9224690 | 584..778 | 97 | <- | Minus |
arm_3R | 9224795..9225154 | 224..583 | 100 | <- | Minus |
arm_3R | 9225232..9225366 | 89..223 | 100 | <- | Minus |
arm_3R | 9227401..9227472 | 17..88 | 100 | | Minus |
BO06759.complete Sequence
784 bp (784 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630521
> BO06759.complete
GAAGTTATCAGTCGACATGAGTCACAAAATCGCCGCTGTGTGCCTCTTGA
TGAGCTGCCTGATTGCCACGGCTTATAGTGCCGCTAAGGTGCCAATTTCT
ATCTACTACGAGTCCCTGTGCCCGGACAGCGCCAAGTTCATTACGGAGCA
GGTATATCCGGCGGTGAAGGGAGAACTGCGCGATGTGGTGGAACTCACTT
TCGTGCCATTCGGAAAGTCTCAGTTCGTTACCCAGGGCTCCGAAGTGACG
TTCACCTGCCACCACGGACCGAACGAGTGCTATGGCAATAAGGTGCATGC
CTGCGCCATCGAGCACATTCAGGCCAACTCCTATCAGGTGGAGTACACGC
GCGAGTCGCTCACGATGGACTTCATCAACTGCCTAATGAAGGCCGGCAAG
AATTTCCCGGACAACGTCTATCCCGGCCAGCGATGCGCCTCGGAGAACCA
CATCAATAACTGGGAGAACATCAAGACCTGTGCCAACTCCACCGAGGGAA
GCGTTCTGCTCCGGAAGGCCGGCGAAAGCACCATGCGGCTCAAGGAGCCA
CTCACCAGCGTGCCCACCATTCTGTTCAATGAGCAATTCGACAAGAAGGT
GAATGATCGCGCCCAGGTGAACTTGGTGGGCACCATCTGCCAATACGTAT
CCGCCCCGCAGCCGCGCATCTGCAACCAGCACAACGGAGCATCGACTCCA
TCTTTGGCCAGCGTAAGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTT
TATCCGCTCCTTCTACGCAAGCTTTCTAGACCAT
BO06759.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT1-RA | 753 | CG9796-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT1-RA | 1122 | CG9796-RA | 113..862 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13399073..13399435 | 583..221 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 13398786..13398970 | 766..582 | 925 | 100 | Minus |
3R | 32079331 | 3R | 13399510..13399646 | 223..87 | 685 | 100 | Minus |
3R | 32079331 | 3R | 13401676..13401750 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:12:04 has no hits.
BO06759.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:27 Download gff for
BO06759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-RA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:45 Download gff for
BO06759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-RA | 109..870 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:49 Download gff for
BO06759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-RA | 113..862 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:27 Download gff for
BO06759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9796-RA | 109..870 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:13 Download gff for
BO06759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT1-RA | 113..862 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:13 Download gff for
BO06759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13399073..13399432 | 224..583 | 100 | <- | Minus |
3R | 13399510..13399644 | 89..223 | 100 | <- | Minus |
3R | 13401679..13401750 | 17..88 | 100 | | Minus |
3R | 13398784..13398968 | 584..768 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:49 Download gff for
BO06759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9227401..9227472 | 17..88 | 100 | | Minus |
arm_3R | 9224506..9224690 | 584..768 | 98 | <- | Minus |
arm_3R | 9224795..9225154 | 224..583 | 100 | <- | Minus |
arm_3R | 9225232..9225366 | 89..223 | 100 | <- | Minus |
BO06759.pep Sequence
Translation from 16 to 784
> BO06759.pep
MSHKIAAVCLLMSCLIATAYSAAKVPISIYYESLCPDSAKFITEQVYPAV
KGELRDVVELTFVPFGKSQFVTQGSEVTFTCHHGPNECYGNKVHACAIEH
IQANSYQVEYTRESLTMDFINCLMKAGKNFPDNVYPGQRCASENHINNWE
NIKTCANSTEGSVLLRKAGESTMRLKEPLTSVPTILFNEQFDKKVNDRAQ
VNLVGTICQYVSAPQPRICNQHNGASTPSLASVSAILSSLLGLWFIRSFY
ASFLDH
BO06759.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT1-PA | 250 | CG9796-PA | 1..250 | 1..250 | 1320 | 100 | Plus |
CG41378-PC | 196 | CG41378-PC | 13..160 | 24..185 | 243 | 34.5 | Plus |
CG41378-PD | 205 | CG41378-PD | 22..169 | 24..185 | 243 | 34.5 | Plus |
CG41378-PB | 228 | CG41378-PB | 45..192 | 24..185 | 243 | 34.5 | Plus |
CG9427-PA | 213 | CG9427-PA | 34..196 | 24..208 | 212 | 33.5 | Plus |