Clone Sequence Records
BO06768.3prime Sequence
804 bp (803 high quality bases) assembled on 2005-12-03
> BO06768.3prime
ATGGTCTAGAAAGCTTGCTGTACTAGCCGTCGAATTACAAATGGCGTAAT
CGGGAATTTTGGTGGTGCAGATATTGTTCACCTCGTCGTAGTACGGCGCA
TTGGTGGGACATGATCCGGTTATTCCGCTGGAGCAGATTGTGTAGTTCTT
GCAACCCTCATCTGCCATGAATGGATTGTTAACGTTCCCACATCGGTTAT
GGGTACAGACAAAGGAGGCTGGCGAAACGCACTTGCCAGCATTGAATTGG
GTACCGGTGGGACATTGGTTCCAATAGCCAGTGGCGTTTACTGCTGCACA
GTAGTAGTACCCATAGCAGGTGACACCATCAGAAACGTACCTATAGTCAA
CAGATTCCCCATTTACAGTAAGTGGATCTGCTGCTTTAAAAGCTTCTTCG
TCACAAGCAGTTGCATTTGTTTGCCCAACAGTGAACTGGTCAGAGTTTCC
ACTGTTTGAATCTTCGCCGGTGCACGGATTCGTCGACTGGCAGTTGCCAG
TGGCTTTATTATAGTAGGGATTGGCGGTGCTGGAACATTTTTCGGAAGTG
CCATAGCCGTTGACGCAGTTGATGTAGTTGCCGCACTGGTTCGGATCGCC
TACAAAGATGTTGGACAACATGAACCGACAGATGGTGTCCTGCGGGCAGG
CGGGTCCCCATATACATTTTGTGGAGGATGCCGAATAGACGCCGCCGGTG
CCGCAATCGCCATAGGAGATTTGGCCTGTGCCATCGCAGTAGGCGTATTC
GGTGCAGTTCAACGGATTGGCCACATACATGGGAGATTTGACGTTGGAGC
ATGT
BO06768.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6933-PA | 1056 | CG6933-RA | 268..1053 | 804..19 | 3930 | 100 | Minus |
CG6933-PC | 1092 | CG6933-RC | 304..1089 | 804..19 | 3930 | 100 | Minus |
CG6933-PB | 1056 | CG6933-RB | 268..1053 | 804..19 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6933-RD | 1413 | CG6933-RD | 512..1297 | 804..19 | 3930 | 100 | Minus |
CG6933-RE | 1377 | CG6933-RE | 476..1261 | 804..19 | 3930 | 100 | Minus |
CG6933-RB | 1246 | CG6933-RB | 345..1130 | 804..19 | 3930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20218618..20219403 | 19..804 | 3930 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:20:47 has no hits.
BO06768.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:01 Download gff for
BO06768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-PC | 304..1092 | 16..804 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:03 Download gff for
BO06768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-PB | 268..1056 | 16..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:07 Download gff for
BO06768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 345..1135 | 13..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:58 Download gff for
BO06768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 345..1135 | 13..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:58 Download gff for
BO06768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20218613..20219403 | 13..804 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:07 Download gff for
BO06768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20211713..20212503 | 13..804 | 99 | | Plus |
BO06768.5prime Sequence
916 bp (816 high quality bases) assembled on 2005-12-03
> BO06768.5prime
GAAGTTATCAGTCGACATGGGAGCAATCAATATGAGGATCTGTGTCGTGG
CCGCATGTCTCCTAATGGCATCGCAGGCCACCGGCTACACGATGGATGAT
CTGTGCCAACAGTGGTCGGGCTATGGATACATCGGCAATCCGAGCAACTG
CCATGCCTGGGGATACTGCAAGAACCAGGAGGTTGTGGCCTGGGGCACCT
GTCCCAACGGCTTGGTGTTCAACGCGCAGGCCGGCAGCTGTGATTACGCT
AATACCACGGTGTGCTCCACCAGTGCCGTTGAGACATGCTCCAACGTCAA
ATCTCCCATGTATGTGGCCAATCCGTTGAACTGCACCGAATACGCCTACT
GCGATGGCACAGGCCAAATCTCCTATGGCGATTGCGGCACCGGCGGCGTC
TATTCGGCATCCTCCACAAAATGTATATGGGGACCCGCCTGCCCGCAGGA
CACCATCTGTCGGTTCATGTTGTCCAACATCTTTGTAGGCGATCCGAACC
AGTGCGGCAACTACATCAACTGCGTCAACGGCTATGGCACTTCCGAAAAA
TGTTCCAGCACCGCCAATCCCTACTATAATAAAGCCACTGGCAACTGCCA
GTCGACGAATCCGTGCACCGGCGAAGATTCAAACAGTGGAAACTCTGACC
AGTTCACTGTTGGGCAAACAAATGCAACTGCTTGTGACGAAGAAGCTTTT
AAAGCAGCAGATCCACTTACTGTAAATGGGGAATCTGTTGACTATAGGTA
CGTTTCTGATGGTGTCACCTGCTATGGGTACTACTACTGTGCAGCAGTAA
ACGCCACTGGCTATTGGAACAATGTCCCACCGGTACCCATTCAATGCTGG
GCAGTGCGTTTCGCCAGCCTCCTTTGTCTGTACCATAACCGATGTGGGAC
GTTAAACATCCATCAT
BO06768.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6933-PB | 1056 | CG6933-RB | 1..804 | 17..820 | 4020 | 100 | Plus |
CG6933-PA | 1056 | CG6933-RA | 6..804 | 22..820 | 3995 | 100 | Plus |
CG6933-PC | 1092 | CG6933-RC | 42..840 | 22..820 | 3995 | 100 | Plus |
CG6933-PB | 1056 | CG6933-RB | 825..870 | 839..884 | 180 | 95.6 | Plus |
CG6933-PA | 1056 | CG6933-RA | 825..870 | 839..884 | 180 | 95.6 | Plus |
CG6933-PC | 1092 | CG6933-RC | 861..906 | 839..884 | 180 | 95.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6933-RE | 1377 | CG6933-RE | 209..1109 | 17..913 | 4345 | 99.1 | Plus |
CG6933-RB | 1246 | CG6933-RB | 78..978 | 17..913 | 4345 | 99.1 | Plus |
CG6933-RD | 1413 | CG6933-RD | 250..1145 | 22..913 | 4320 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20218785..20219665 | 899..22 | 4225 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:49:33 has no hits.
BO06768.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:02 Download gff for
BO06768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-PB | 1..905 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:04 Download gff for
BO06768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-PB | 1..905 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:02 Download gff for
BO06768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 69..982 | 9..916 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:01 Download gff for
BO06768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 69..982 | 9..916 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:01 Download gff for
BO06768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20218766..20219670 | 16..916 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:02 Download gff for
BO06768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20211866..20212770 | 16..916 | 98 | | Minus |
BO06768.complete Sequence
1087 bp (1087 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ638645
> BO06768.complete
GAAGTTATCAGTCGACATGGGAGCAATCAATATGAGGATCTGTGTCGTGG
CCGCATGTCTCCTAATGGCATCGCAGGCCACCGGCTACACGATGGATGAT
CTGTGCCAACAGTGGTCGGGCTATGGATACATCGGCAATCCGAGCAACTG
CCATGCCTGGGGATACTGCAAGAACCAGGAGGTTGTGGCCTGGGGCACCT
GTCCCAACGGCTTGGTGTTCAACGCGCAGGCCGGCAGCTGTGATTACGCT
AATACCACGGTGTGCTCCACCAGTGCCGTTGAGACATGCTCCAACGTCAA
ATCTCCCATGTATGTGGCCAATCCGTTGAACTGCACCGAATACGCCTACT
GCGATGGCACAGGCCAAATCTCCTATGGCGATTGCGGCACCGGCGGCGTC
TATTCGGCATCCTCCACAAAATGTATATGGGGACCCGCCTGCCCGCAGGA
CACCATCTGTCGGTTCATGTTGTCCAACATCTTTGTAGGCGATCCGAACC
AGTGCGGCAACTACATCAACTGCGTCAACGGCTATGGCACTTCCGAAAAA
TGTTCCAGCACCGCCAATCCCTACTATAATAAAGCCACTGGCAACTGCCA
GTCGACGAATCCGTGCACCGGCGAAGATTCAAACAGTGGAAACTCTGACC
AGTTCACTGTTGGGCAAACAAATGCAACTGCTTGTGACGAAGAAGCTTTT
AAAGCAGCAGATCCACTTACTGTAAATGGGGAATCTGTTGACTATAGGTA
CGTTTCTGATGGTGTCACCTGCTATGGGTACTACTACTGTGCAGCAGTAA
ACGCCACTGGCTATTGGAACCAATGTCCCACCGGTACCCAATTCAATGCT
GGCAAGTGCGTTTCGCCAGCCTCCTTTGTCTGTACCCATAACCGATGTGG
GAACGTTAACAATCCATTCATGGCAGATGAGGGTTGCAAGAACTACACAA
TCTGCTCCAGCGGAATAACCGGATCATGTCCCACCAATGCGCCGTACTAC
GACGAGGTGAACAATATCTGCACCACCAAAATTCCCGATTACGCCATTTG
TAATTCGACGGCTAGTACAGCAAGCTTTCTAGACCAT
BO06768.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6933-RE | 1056 | CG6933-PE | 1..1053 | 17..1069 | 5265 | 100 | Plus |
CG6933-RB | 1056 | CG6933-PB | 1..1053 | 17..1069 | 5265 | 100 | Plus |
CG6933-RD | 1092 | CG6933-PD | 42..1089 | 22..1069 | 5240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6933-RE | 1377 | CG6933-RE | 209..1261 | 17..1069 | 5265 | 100 | Plus |
CG6933-RB | 1246 | CG6933-RB | 78..1130 | 17..1069 | 5265 | 100 | Plus |
CG6933-RD | 1413 | CG6933-RD | 250..1297 | 22..1069 | 5240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20218618..20219665 | 1069..22 | 5240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:01:57 has no hits.
BO06768.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:29 Download gff for
BO06768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 1..1056 | 17..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:49 Download gff for
BO06768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 69..1135 | 9..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:25 Download gff for
BO06768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 78..1130 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:29 Download gff for
BO06768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 69..1135 | 9..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:12 Download gff for
BO06768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6933-RB | 78..1130 | 17..1071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:12 Download gff for
BO06768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20218615..20219669 | 17..1071 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:25 Download gff for
BO06768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20211715..20212769 | 17..1071 | 99 | | Minus |
BO06768.pep Sequence
Translation from 16 to 1087
> BO06768.pep
MGAINMRICVVAACLLMASQATGYTMDDLCQQWSGYGYIGNPSNCHAWGY
CKNQEVVAWGTCPNGLVFNAQAGSCDYANTTVCSTSAVETCSNVKSPMYV
ANPLNCTEYAYCDGTGQISYGDCGTGGVYSASSTKCIWGPACPQDTICRF
MLSNIFVGDPNQCGNYINCVNGYGTSEKCSSTANPYYNKATGNCQSTNPC
TGEDSNSGNSDQFTVGQTNATACDEEAFKAADPLTVNGESVDYRYVSDGV
TCYGYYYCAAVNATGYWNQCPTGTQFNAGKCVSPASFVCTHNRCGNVNNP
FMADEGCKNYTICSSGITGSCPTNAPYYDEVNNICTTKIPDYAICNSTAS
TASFLDH
BO06768.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6933-PE | 351 | CG6933-PE | 1..351 | 1..351 | 1992 | 100 | Plus |
CG6933-PB | 351 | CG6933-PB | 1..351 | 1..351 | 1992 | 100 | Plus |
CG6933-PA | 351 | CG6933-PA | 1..351 | 1..351 | 1984 | 99.7 | Plus |
CG6933-PD | 363 | CG6933-PD | 13..363 | 1..351 | 1982 | 99.4 | Plus |
CG6933-PC | 363 | CG6933-PC | 13..363 | 1..351 | 1982 | 99.4 | Plus |