Clone BO06770 Report

Search the DGRC for BO06770

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG7906-RA
Protein status:BO06770.pep: validated full length
Sequenced Size:1096

Clone Sequence Records

BO06770.3prime Sequence

897 bp (841 high quality bases) assembled on 2005-12-03

> BO06770.3prime
ATGGTCTAGAAAGCTTGCCATCATATCCCTTTTATAGCAAGTAATGGTAT
TTTGGCATTCGGCATCGTGCACTTGGTGGAAAACATTCTTGGTGTTGAAG
CAGTTCCACTGACTCAGCTCACATTGGCCTGGAAAATTGACCACACATTT
GCCGTTGCTGGCACAAATGGACAGTGATGCTTTGGGACACTGAAAATTGC
ATTTTCCCAATTTCATTTCCTCACGATGCTGGGCAATCAGTTGGGGAATG
TGGGCGTGAACTTGGTTGACTATATTGGACACTTTATCGGGAATAACCAG
CGAGCGACCAGCCTTCGATGAACTTGGTTGGGGTGTTGTTTCGGATGGTT
CAGGATCCTCCTGATCTTCTTTTACTTCCTTTTCTTTGTCATCAACCTTG
TTGATTTCTTTATCCTTCTGGAGCTGCTCCTTTTCTCTTTGAGCTTCCTG
TTCTTTCTTTTGTTTAATGGCCTGGTTCACTGCTAATGGAATGTGTTTCT
CGGCCTGCTGCATCACCTTGGTCACATGCTGTTGAAGTTTTTGCAGCTTT
TCGGCCACATTAATGGGTTCTTGACCAGGAAGCGAGAGCACCACATGCTC
CACGGGCGGCATCACCACCTTATTCTGCACCACCGGCCTTCCGTGGTGGA
TCAGAGTACCGGTGGCCTGGTGATGGGTCACCTTCACCGGTGGATTGCCA
GCTTGCACCGACTGTATGCCAGATTGCAACGCAGGTGCAGCCGCTGGGAC
GTCGGCAAGGGGAGGGGCAAGGACATCACCAGAGTGTGCCAATGGTGGAA
GGAGATCTGGATGGGGCTTGACCACTGGCGCACCGCCCTCACTCCCACTC
CCACTCCCATGCCAATCCACAGGTCCCACTCATGTGTTCGAAACCTG

BO06770.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-PA 1065 CG7906-RA 205..1062 876..19 4290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-RA 1233 CG7906-RA 228..1106 897..19 4350 99.8 Minus
CG7906-RB 1351 CG7906-RB 317..1201 897..19 4280 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14237182..14237995 897..84 3995 99.4 Minus
3L 28110227 3L 14238057..14238122 84..19 330 100 Minus
Blast to na_te.dros performed 2015-02-12 15:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 759..862 465..362 123 60 Minus

BO06770.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:05 Download gff for BO06770.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-PA 184..1065 15..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:09 Download gff for BO06770.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-PA 184..1065 15..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:29 Download gff for BO06770.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 228..1116 9..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:37 Download gff for BO06770.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 228..1116 9..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:37 Download gff for BO06770.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14237182..14237995 84..897 99 -> Minus
3L 14238058..14238132 9..83 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:29 Download gff for BO06770.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14230282..14231095 84..897 99 -> Minus
arm_3L 14231158..14231232 9..83 96   Minus

BO06770.5prime Sequence

908 bp (744 high quality bases) assembled on 2005-12-03

> BO06770.5prime
GAAGTTATCAGTCGACATGAAGACTATTTTGGTTTTAGCCATCCTGTCGC
TGGCGCAAGCCGCCGAGTTGACTCAGACTACGGAAGCCGCAACTACAGCC
ACAACGGGGAAACCACAGCAAACGGAGCTCCCCATTCACATCCAGAACCT
GATAACCAGCCACATCAATCATGTACTCCAGCACATAAAGAACAAACCTC
AGGTTTCGAACACATTGAGTGGACCTGTGGATTGGCATGGGAGTGGGAGT
GGGAGTGAGGGCGGTGCGCCAGTGGTCAAGCCCCATCCAGATCTCCTTCC
ACCATTGGCACACTCTGGTGATGTCCTTGCCCCTCCCCTTGCCGACGTCC
CAGCGGCTGCACCTGCGTTGCAATCTGGCATACAGTCGGTGCAAGCTGGC
AATCCACCGGTGAAGGTGACCCATCACCAGGCCACCGGTACTCTGATCCA
CCACGGAAGGCCGGTGGTGCAGAATAAGGTGGTGATGCCGCCCGTGGAGC
ATGTGGTGCTCTCGCTTCCTGGTCAAGAACCCATTAATGTGGCCGAAAAG
CTGCAAAAACTTCAACAGCATGTGACCAAGGTGATGCAGCAGGCCGAGAA
ACACATTCCATTAGCAGTGAACCAGGCCATTAAACAAAAGAAAGAACAGG
AAGCTCAAAGAGAAAAGGAGCAGCTCCAGAAGGATAAAGAAATCAACAAG
GTTGATGACAAAGAANAGGAAGTAAAAGAAGATCAGGAGGATCCTGAACC
ATCCGAAACAACACCCCAACCAAGTTCATCGAAGGCTGGTCGCTCGCTGG
TTATTCCCGATAAAGTGTCCAATATAGTCAACCAAGTTCACGCCCACATT
CCCCAACTGATTGCCCAGCATCGTGAGGAAATGAAATTGGGAAAATGCAA
TTTTCAGT

BO06770.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-PA 1065 CG7906-RA 1..892 17..908 4441 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-RB 1351 CG7906-RB 132..1025 15..908 4459 99.9 Plus
CG7906-RA 1233 CG7906-RA 43..936 15..908 4459 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14237018..14237890 36..908 4354 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 16:43:17 has no hits.

BO06770.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:06 Download gff for BO06770.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:10 Download gff for BO06770.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:38 Download gff for BO06770.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 39..936 10..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:24 Download gff for BO06770.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 39..936 10..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:24 Download gff for BO06770.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14236762..14236789 10..38 93 -> Plus
3L 14237021..14237890 39..908 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:38 Download gff for BO06770.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14229862..14229889 10..38 93 -> Plus
arm_3L 14230121..14230990 39..908 99   Plus

BO06770.complete Sequence

1096 bp (1096 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630525

> BO06770.complete
GAAGTTATCAGTCGACATGAAGACTATTTTGGTTTTAGCCATCCTGTCGC
TGGCGCAAGCCGCCGAGTTGACTCAGACTACGGAAGCCGCAACTACAGCC
ACAACGGGGAAACCACAGCAAACGGAGCTCCCCATTCACATCCAGAACCT
GATAACCAGCCACATCAATCATGTACTCCAGCACATAAAGAACAAACCTC
AGGTTTCGAACACATTGAGTGGACCTGTGGATTGGCATGGGAGTGGGAGT
GGGAGTGAGGGCGGTGCGCCAGTGGTCAAGCCCCATCCAGATCTCCTTCC
ACCATTGGCACACTCTGGTGATGTCCTTGCCCCTCCCCTTGCCGACGTCC
CAGCGGCTGCACCTGCGTTGCAATCTGGCATACAGTCGGTGCAAGCTGGC
AATCCACCGGTGAAGGTGACCCATCACCAGGCCACCGGTACTCTGATCCA
CCACGGAAGGCCGGTGGTGCAGAATAAGGTGGTGATGCCGCCCGTGGAGC
ATGTGGTGCTCTCGCTTCCTGGTCAAGAACCCATTAATGTGGCCGAAAAG
CTGCAAAAACTTCAACAGCATGTGACCAAGGTGATGCAGCAGGCCGAGAA
ACACATTCCATTAGCAGTGAACCAGGCCATTAAACAAAAGAAAGAACAGG
AAGCTCAAAGAGAAAAGGAGCAGCTCCAGAAGGATAAAGAAATCAACAAG
GTTGATGACAAAGAAAAGGAAGTAAAAGAAGATCAGGAGGATCCTGAACC
ATCCGAAACAACACCCCAACCAAGTTCATCGAAGGCTGGTCGCTCGCTGG
TTATTCCCGATAAAGTGTCCAATATAGTCAACCAAGTTCACGCCCACATT
CCCCAACTGATTGCCCAGCATCGTGAGGAAATGAAATTGGGAAAATGCAA
TTTTCAGTGTCCCAAAGCATCACTGTCCATTTGTGCCAGCAACGGCAAAT
GTGTGGTCAATTTTCCAGGCCAATGTGAGCTGAGTCAGTGGAACTGCTTC
AACACCAAGAATGTTTTCCACCAAGTGCACGATGCCGAATGCCAAAATAC
CATTACTTGCTATAAAAGGGATATGATGGCAAGCTTTCTAGACCAT

BO06770.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-RA 1065 CG7906-PA 1..1062 17..1078 5310 100 Plus
CG7906-RB 1071 CG7906-PB 1..1068 17..1078 5215 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-RA 1233 CG7906-RA 43..1106 15..1078 5320 100 Plus
CG7906-RB 1351 CG7906-RB 132..1201 15..1078 5225 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14237018..14237995 36..1013 4890 100 Plus
3L 28110227 3L 14238057..14238122 1013..1078 330 100 Plus
Blast to na_te.dros performed 2014-11-26 16:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 759..862 632..735 123 60 Plus

BO06770.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:16 Download gff for BO06770.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 1..1065 17..1082 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:32 Download gff for BO06770.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 39..1116 10..1088 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:54 Download gff for BO06770.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 45..1106 17..1080 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:17 Download gff for BO06770.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 39..1116 10..1088 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:53 Download gff for BO06770.complete
Subject Subject Range Query Range Percent Splice Strand
CG7906-RA 45..1106 17..1080 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:53 Download gff for BO06770.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14236768..14236789 17..38 100 -> Plus
3L 14237021..14237995 39..1013 100 -> Plus
3L 14238058..14238122 1014..1080 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:54 Download gff for BO06770.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14230121..14231095 39..1013 100 -> Plus
arm_3L 14229868..14229889 17..38 100 -> Plus
arm_3L 14231158..14231222 1014..1080 97   Plus

BO06770.pep Sequence

Translation from 16 to 1096

> BO06770.pep
MKTILVLAILSLAQAAELTQTTEAATTATTGKPQQTELPIHIQNLITSHI
NHVLQHIKNKPQVSNTLSGPVDWHGSGSGSEGGAPVVKPHPDLLPPLAHS
GDVLAPPLADVPAAAPALQSGIQSVQAGNPPVKVTHHQATGTLIHHGRPV
VQNKVVMPPVEHVVLSLPGQEPINVAEKLQKLQQHVTKVMQQAEKHIPLA
VNQAIKQKKEQEAQREKEQLQKDKEINKVDDKEKEVKEDQEDPEPSETTP
QPSSSKAGRSLVIPDKVSNIVNQVHAHIPQLIAQHREEMKLGKCNFQCPK
ASLSICASNGKCVVNFPGQCELSQWNCFNTKNVFHQVHDAECQNTITCYK
RDMMASFLDH

BO06770.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7906-PA 354 CG7906-PA 1..354 1..354 1855 100 Plus
CG7906-PB 356 CG7906-PB 1..356 1..354 1842 99.4 Plus