Clone Sequence Records
BO06770.3prime Sequence
897 bp (841 high quality bases) assembled on 2005-12-03
> BO06770.3prime
ATGGTCTAGAAAGCTTGCCATCATATCCCTTTTATAGCAAGTAATGGTAT
TTTGGCATTCGGCATCGTGCACTTGGTGGAAAACATTCTTGGTGTTGAAG
CAGTTCCACTGACTCAGCTCACATTGGCCTGGAAAATTGACCACACATTT
GCCGTTGCTGGCACAAATGGACAGTGATGCTTTGGGACACTGAAAATTGC
ATTTTCCCAATTTCATTTCCTCACGATGCTGGGCAATCAGTTGGGGAATG
TGGGCGTGAACTTGGTTGACTATATTGGACACTTTATCGGGAATAACCAG
CGAGCGACCAGCCTTCGATGAACTTGGTTGGGGTGTTGTTTCGGATGGTT
CAGGATCCTCCTGATCTTCTTTTACTTCCTTTTCTTTGTCATCAACCTTG
TTGATTTCTTTATCCTTCTGGAGCTGCTCCTTTTCTCTTTGAGCTTCCTG
TTCTTTCTTTTGTTTAATGGCCTGGTTCACTGCTAATGGAATGTGTTTCT
CGGCCTGCTGCATCACCTTGGTCACATGCTGTTGAAGTTTTTGCAGCTTT
TCGGCCACATTAATGGGTTCTTGACCAGGAAGCGAGAGCACCACATGCTC
CACGGGCGGCATCACCACCTTATTCTGCACCACCGGCCTTCCGTGGTGGA
TCAGAGTACCGGTGGCCTGGTGATGGGTCACCTTCACCGGTGGATTGCCA
GCTTGCACCGACTGTATGCCAGATTGCAACGCAGGTGCAGCCGCTGGGAC
GTCGGCAAGGGGAGGGGCAAGGACATCACCAGAGTGTGCCAATGGTGGAA
GGAGATCTGGATGGGGCTTGACCACTGGCGCACCGCCCTCACTCCCACTC
CCACTCCCATGCCAATCCACAGGTCCCACTCATGTGTTCGAAACCTG
BO06770.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7906-PA | 1065 | CG7906-RA | 205..1062 | 876..19 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7906-RA | 1233 | CG7906-RA | 228..1106 | 897..19 | 4350 | 99.8 | Minus |
CG7906-RB | 1351 | CG7906-RB | 317..1201 | 897..19 | 4280 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14237182..14237995 | 897..84 | 3995 | 99.4 | Minus |
3L | 28110227 | 3L | 14238057..14238122 | 84..19 | 330 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 15:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 759..862 | 465..362 | 123 | 60 | Minus |
BO06770.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:05 Download gff for
BO06770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-PA | 184..1065 | 15..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:09 Download gff for
BO06770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-PA | 184..1065 | 15..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:29 Download gff for
BO06770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 228..1116 | 9..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:37 Download gff for
BO06770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 228..1116 | 9..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:37 Download gff for
BO06770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14237182..14237995 | 84..897 | 99 | -> | Minus |
3L | 14238058..14238132 | 9..83 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:29 Download gff for
BO06770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14230282..14231095 | 84..897 | 99 | -> | Minus |
arm_3L | 14231158..14231232 | 9..83 | 96 | | Minus |
BO06770.5prime Sequence
908 bp (744 high quality bases) assembled on 2005-12-03
> BO06770.5prime
GAAGTTATCAGTCGACATGAAGACTATTTTGGTTTTAGCCATCCTGTCGC
TGGCGCAAGCCGCCGAGTTGACTCAGACTACGGAAGCCGCAACTACAGCC
ACAACGGGGAAACCACAGCAAACGGAGCTCCCCATTCACATCCAGAACCT
GATAACCAGCCACATCAATCATGTACTCCAGCACATAAAGAACAAACCTC
AGGTTTCGAACACATTGAGTGGACCTGTGGATTGGCATGGGAGTGGGAGT
GGGAGTGAGGGCGGTGCGCCAGTGGTCAAGCCCCATCCAGATCTCCTTCC
ACCATTGGCACACTCTGGTGATGTCCTTGCCCCTCCCCTTGCCGACGTCC
CAGCGGCTGCACCTGCGTTGCAATCTGGCATACAGTCGGTGCAAGCTGGC
AATCCACCGGTGAAGGTGACCCATCACCAGGCCACCGGTACTCTGATCCA
CCACGGAAGGCCGGTGGTGCAGAATAAGGTGGTGATGCCGCCCGTGGAGC
ATGTGGTGCTCTCGCTTCCTGGTCAAGAACCCATTAATGTGGCCGAAAAG
CTGCAAAAACTTCAACAGCATGTGACCAAGGTGATGCAGCAGGCCGAGAA
ACACATTCCATTAGCAGTGAACCAGGCCATTAAACAAAAGAAAGAACAGG
AAGCTCAAAGAGAAAAGGAGCAGCTCCAGAAGGATAAAGAAATCAACAAG
GTTGATGACAAAGAANAGGAAGTAAAAGAAGATCAGGAGGATCCTGAACC
ATCCGAAACAACACCCCAACCAAGTTCATCGAAGGCTGGTCGCTCGCTGG
TTATTCCCGATAAAGTGTCCAATATAGTCAACCAAGTTCACGCCCACATT
CCCCAACTGATTGCCCAGCATCGTGAGGAAATGAAATTGGGAAAATGCAA
TTTTCAGT
BO06770.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7906-PA | 1065 | CG7906-RA | 1..892 | 17..908 | 4441 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:43:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7906-RB | 1351 | CG7906-RB | 132..1025 | 15..908 | 4459 | 99.9 | Plus |
CG7906-RA | 1233 | CG7906-RA | 43..936 | 15..908 | 4459 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14237018..14237890 | 36..908 | 4354 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:43:17 has no hits.
BO06770.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:06 Download gff for
BO06770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:10 Download gff for
BO06770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:38 Download gff for
BO06770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 39..936 | 10..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:24 Download gff for
BO06770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 39..936 | 10..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:24 Download gff for
BO06770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14236762..14236789 | 10..38 | 93 | -> | Plus |
3L | 14237021..14237890 | 39..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:38 Download gff for
BO06770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14229862..14229889 | 10..38 | 93 | -> | Plus |
arm_3L | 14230121..14230990 | 39..908 | 99 | | Plus |
BO06770.complete Sequence
1096 bp (1096 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630525
> BO06770.complete
GAAGTTATCAGTCGACATGAAGACTATTTTGGTTTTAGCCATCCTGTCGC
TGGCGCAAGCCGCCGAGTTGACTCAGACTACGGAAGCCGCAACTACAGCC
ACAACGGGGAAACCACAGCAAACGGAGCTCCCCATTCACATCCAGAACCT
GATAACCAGCCACATCAATCATGTACTCCAGCACATAAAGAACAAACCTC
AGGTTTCGAACACATTGAGTGGACCTGTGGATTGGCATGGGAGTGGGAGT
GGGAGTGAGGGCGGTGCGCCAGTGGTCAAGCCCCATCCAGATCTCCTTCC
ACCATTGGCACACTCTGGTGATGTCCTTGCCCCTCCCCTTGCCGACGTCC
CAGCGGCTGCACCTGCGTTGCAATCTGGCATACAGTCGGTGCAAGCTGGC
AATCCACCGGTGAAGGTGACCCATCACCAGGCCACCGGTACTCTGATCCA
CCACGGAAGGCCGGTGGTGCAGAATAAGGTGGTGATGCCGCCCGTGGAGC
ATGTGGTGCTCTCGCTTCCTGGTCAAGAACCCATTAATGTGGCCGAAAAG
CTGCAAAAACTTCAACAGCATGTGACCAAGGTGATGCAGCAGGCCGAGAA
ACACATTCCATTAGCAGTGAACCAGGCCATTAAACAAAAGAAAGAACAGG
AAGCTCAAAGAGAAAAGGAGCAGCTCCAGAAGGATAAAGAAATCAACAAG
GTTGATGACAAAGAAAAGGAAGTAAAAGAAGATCAGGAGGATCCTGAACC
ATCCGAAACAACACCCCAACCAAGTTCATCGAAGGCTGGTCGCTCGCTGG
TTATTCCCGATAAAGTGTCCAATATAGTCAACCAAGTTCACGCCCACATT
CCCCAACTGATTGCCCAGCATCGTGAGGAAATGAAATTGGGAAAATGCAA
TTTTCAGTGTCCCAAAGCATCACTGTCCATTTGTGCCAGCAACGGCAAAT
GTGTGGTCAATTTTCCAGGCCAATGTGAGCTGAGTCAGTGGAACTGCTTC
AACACCAAGAATGTTTTCCACCAAGTGCACGATGCCGAATGCCAAAATAC
CATTACTTGCTATAAAAGGGATATGATGGCAAGCTTTCTAGACCAT
BO06770.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7906-RA | 1065 | CG7906-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
CG7906-RB | 1071 | CG7906-PB | 1..1068 | 17..1078 | 5215 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7906-RA | 1233 | CG7906-RA | 43..1106 | 15..1078 | 5320 | 100 | Plus |
CG7906-RB | 1351 | CG7906-RB | 132..1201 | 15..1078 | 5225 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14237018..14237995 | 36..1013 | 4890 | 100 | Plus |
3L | 28110227 | 3L | 14238057..14238122 | 1013..1078 | 330 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 759..862 | 632..735 | 123 | 60 | Plus |
BO06770.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:16 Download gff for
BO06770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 1..1065 | 17..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:32 Download gff for
BO06770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 39..1116 | 10..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:54 Download gff for
BO06770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 45..1106 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:17 Download gff for
BO06770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 39..1116 | 10..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:53 Download gff for
BO06770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7906-RA | 45..1106 | 17..1080 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:53 Download gff for
BO06770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14236768..14236789 | 17..38 | 100 | -> | Plus |
3L | 14237021..14237995 | 39..1013 | 100 | -> | Plus |
3L | 14238058..14238122 | 1014..1080 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:54 Download gff for
BO06770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14230121..14231095 | 39..1013 | 100 | -> | Plus |
arm_3L | 14229868..14229889 | 17..38 | 100 | -> | Plus |
arm_3L | 14231158..14231222 | 1014..1080 | 97 | | Plus |
BO06770.pep Sequence
Translation from 16 to 1096
> BO06770.pep
MKTILVLAILSLAQAAELTQTTEAATTATTGKPQQTELPIHIQNLITSHI
NHVLQHIKNKPQVSNTLSGPVDWHGSGSGSEGGAPVVKPHPDLLPPLAHS
GDVLAPPLADVPAAAPALQSGIQSVQAGNPPVKVTHHQATGTLIHHGRPV
VQNKVVMPPVEHVVLSLPGQEPINVAEKLQKLQQHVTKVMQQAEKHIPLA
VNQAIKQKKEQEAQREKEQLQKDKEINKVDDKEKEVKEDQEDPEPSETTP
QPSSSKAGRSLVIPDKVSNIVNQVHAHIPQLIAQHREEMKLGKCNFQCPK
ASLSICASNGKCVVNFPGQCELSQWNCFNTKNVFHQVHDAECQNTITCYK
RDMMASFLDH
BO06770.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7906-PA | 354 | CG7906-PA | 1..354 | 1..354 | 1855 | 100 | Plus |
CG7906-PB | 356 | CG7906-PB | 1..356 | 1..354 | 1842 | 99.4 | Plus |