Clone Sequence Records
BO06771.3prime Sequence
917 bp (896 high quality bases) assembled on 2005-12-03
> BO06771.3prime
ATGGTCTAGAAAGCTTGCCATCTCGAAGACGAGCGATCCGGAGGCGTAGC
TAACGCTGGAGTCCTCAATGTCCTGACACTGGCTGCTCTGGGCGTACTTG
AGGAACTTGAAACTCATCTTGTCGTAGCCCTGATCCTGCAGTGCCTTCAC
GGCGCCTAGCATTACTCCGATGGGATGGCGTCCGCATATCGTATTGTTGT
ACTTGCGCAAGTACTCGGTGAAGGAGTGCGGATTGAGCGACTCAATGATG
TCCATGCCCTGCTTGTCCAGCTTCTCGATGGACTTGTGAATCGCTCCGCA
GGAGCTGTCATAGTAGGTATAGCTGAAGCGATGGCCCCAGTGGCAAAAGT
CGGAAGATATCACAAACAGATTGGTGGGGTCCATCAGATACGAGGACAGC
AGGCTGCCGTACTGCGCCTCCTGTTCGGGATTGAGCGAACCCACCAGAAT
AGGCACAATGGTGAACTGATCCTTGTAGTCCTCCATCACTTTGGCAATGT
AGGGTAAATGCATCTCGATGGAGTGTTCATCCTCGTCAGTCTTCATGTCC
ATCCAAGAAAACTTTCCAGTCTTCTCAAGCTCAGAGTTGATCTGAGCATC
AATTTTGAGATCATAGAGGGGTGTCCTGTACTTCTTCGCCACGGATAAGG
CGCAGCCACGCAGACGCACATGATGCGAGGGACCCAGTATGAAGATTCGC
TTGACGACAACTGGGCTAACTTGGCGATAGGCAAAGGCAGCGCAGGCTCC
ACAGTACGTATATCCAGCATGTGGAGCAATGATGGCACGAGCCGGTCCAT
GGGACAAATCTGCGGCACCCAGCCAACGATCCAACTGTCTCGAGAGCTCG
GCGCCCGAGTCCGTGTACCAGCTGCCTGCATGGGTTGCTCTTCTGGCCGA
CATGTCGACTGATAACT
BO06771.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8031-PA | 888 | CG8031-RA | 1..885 | 903..19 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8031-RA | 1318 | CG8031-RA | 131..1015 | 903..19 | 4425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:19:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13008687..13009146 | 19..478 | 2300 | 100 | Plus |
3R | 32079331 | 3R | 13009382..13009494 | 591..703 | 565 | 100 | Plus |
3R | 32079331 | 3R | 13009204..13009315 | 479..590 | 560 | 100 | Plus |
3R | 32079331 | 3R | 13009689..13009771 | 773..855 | 415 | 100 | Plus |
3R | 32079331 | 3R | 13009559..13009627 | 704..772 | 345 | 100 | Plus |
3R | 32079331 | 3R | 13011131..13011180 | 854..903 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:19:31 has no hits.
BO06771.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:07 Download gff for
BO06771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-PA | 1..888 | 16..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:12 Download gff for
BO06771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-PA | 1..888 | 16..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:43 Download gff for
BO06771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 125..1029 | 6..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:37 Download gff for
BO06771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 125..1029 | 6..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:37 Download gff for
BO06771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13008673..13009146 | 6..478 | 98 | <- | Plus |
3R | 13009204..13009315 | 479..590 | 100 | <- | Plus |
3R | 13009382..13009494 | 591..703 | 100 | <- | Plus |
3R | 13009559..13009627 | 704..772 | 100 | <- | Plus |
3R | 13009689..13009770 | 773..854 | 100 | <- | Plus |
3R | 13011132..13011186 | 855..911 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:43 Download gff for
BO06771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8834395..8834868 | 6..478 | 98 | <- | Plus |
arm_3R | 8834926..8835037 | 479..590 | 100 | <- | Plus |
arm_3R | 8835104..8835216 | 591..703 | 100 | <- | Plus |
arm_3R | 8835281..8835349 | 704..772 | 100 | <- | Plus |
arm_3R | 8835411..8835492 | 773..854 | 100 | <- | Plus |
arm_3R | 8836854..8836908 | 855..911 | 92 | | Plus |
BO06771.5prime Sequence
919 bp (796 high quality bases) assembled on 2005-12-03
> BO06771.5prime
GAAGTTATCAGTCGACATGTCGGCCAGAAGAGCAACCCATGCAGGCAGCT
GGTACACGGACTCGGGCGCCGAGCTCTCGAGACAGTTGGATCGTTGGCTG
GGTGCCGCAGATTTGTCCCATGGACCGGCTCGTGCCATCATTGCTCCACA
TGCTGGATATACGTACTGTGGAGCCTGCGCTGCCTTTGCCTATCGCCAAG
TTAGCCCAGTTGTCGTCAAGCGAATCTTCATACTGGGTCCCTCGCATCAT
GTGCGTCTGCGTGGCTGCGCCTTATCCGTGGCGAAGAAGTACAGGACACC
CCTCTATGATCTCAAAATTGATGCTCAGATCAACTCTGAGCTTGAGAAGA
CTGGAAAGTTTTCTTGGATGGACATGAAGACTGACGAGGATGAACACTCC
ATCGAGATGCATTTACCCTACATTGCCAAAGTGATGGAGGACTACAAGGA
TCAGTTCACCATTGTGCCTATTCTGGTGGGTTCGCTCAATCCCGAACAGG
AGGCGCAGTACGGCAGCCTGCTGTCCTCGTATCTGATGGACCCCACCAAT
CTGTTTGTGATATCTTCCGACTTTTGCCACTGGGGCCATCGCTTCAGCTA
TACCTACTATGACAGCTCCTGCGGAGCGATTCACAAGTCCATCGAGAAGC
TGGACAAGCAGGGCATGGACATCATTGAGTCGCTCAATCCGCACTCCTTC
ACCGAGTACTTGCGCAAGTACAACAATACGATATGCGGACGCCATCCCAT
CGGAGTAATGCTAGGCGCCGTGAAGGCACTGCAGGATCAGGGCTACGACN
AGATGAGTTTCAAGTTCCTCAAGTACGCCCAGAGCAGCCAGTGTCAGGAC
ATTGAGGACTCCAGCGTTAGCTACGCCTCCGGATCGCTCGTCTTCGAGAT
GGCAAGCTTTCTAGACCAT
BO06771.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8031-PA | 888 | CG8031-RA | 1..885 | 17..901 | 4406 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8031-RA | 1318 | CG8031-RA | 131..1015 | 17..901 | 4414 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13008687..13009146 | 901..442 | 2289 | 99.8 | Minus |
3R | 32079331 | 3R | 13009382..13009494 | 329..217 | 565 | 100 | Minus |
3R | 32079331 | 3R | 13009204..13009315 | 441..330 | 560 | 100 | Minus |
3R | 32079331 | 3R | 13009689..13009771 | 147..65 | 415 | 100 | Minus |
3R | 32079331 | 3R | 13009559..13009627 | 216..148 | 345 | 100 | Minus |
3R | 32079331 | 3R | 13011131..13011180 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:45:55 has no hits.
BO06771.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:09 Download gff for
BO06771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:13 Download gff for
BO06771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:32 Download gff for
BO06771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 125..1029 | 9..914 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:46 Download gff for
BO06771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 125..1029 | 9..914 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:46 Download gff for
BO06771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13008673..13009146 | 442..914 | 98 | <- | Minus |
3R | 13009204..13009315 | 330..441 | 100 | <- | Minus |
3R | 13009382..13009494 | 217..329 | 100 | <- | Minus |
3R | 13009559..13009627 | 148..216 | 100 | <- | Minus |
3R | 13009689..13009770 | 66..147 | 100 | <- | Minus |
3R | 13011132..13011186 | 9..65 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:32 Download gff for
BO06771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8834395..8834868 | 442..914 | 98 | <- | Minus |
arm_3R | 8834926..8835037 | 330..441 | 100 | <- | Minus |
arm_3R | 8835104..8835216 | 217..329 | 100 | <- | Minus |
arm_3R | 8835281..8835349 | 148..216 | 100 | <- | Minus |
arm_3R | 8835411..8835492 | 66..147 | 100 | <- | Minus |
arm_3R | 8836854..8836908 | 9..65 | 92 | | Minus |
BO06771.complete Sequence
919 bp (919 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630526
> BO06771.complete
GAAGTTATCAGTCGACATGTCGGCCAGAAGAGCAACCCATGCAGGCAGCT
GGTACACGGACTCGGGCGCCGAGCTCTCGAGACAGTTGGATCGTTGGCTG
GGTGCCGCAGATTTGTCCCATGGACCGGCTCGTGCCATCATTGCTCCACA
TGCTGGATATACGTACTGTGGAGCCTGCGCTGCCTTTGCCTATCGCCAAG
TTAGCCCAGTTGTCGTCAAGCGAATCTTCATACTGGGTCCCTCGCATCAT
GTGCGTCTGCGTGGCTGCGCCTTATCCGTGGCGAAGAAGTACAGGACACC
CCTCTATGATCTCAAAATTGATGCTCAGATCAACTCTGAGCTTGAGAAGA
CTGGAAAGTTTTCTTGGATGGACATGAAGACTGACGAGGATGAACACTCC
ATCGAGATGCATTTACCCTACATTGCCAAAGTGATGGAGGACTACAAGGA
TCAGTTCACCATTGTGCCTATTCTGGTGGGTTCGCTCAATCCCGAACAGG
AGGCGCAGTACGGCAGCCTGCTGTCCTCGTATCTGATGGACCCCACCAAT
CTGTTTGTGATATCTTCCGACTTTTGCCACTGGGGCCATCGCTTCAGCTA
TACCTACTATGACAGCTCCTGCGGAGCGATTCACAAGTCCATCGAGAAGC
TGGACAAGCAGGGCATGGACATCATTGAGTCGCTCAATCCGCACTCCTTC
ACCGAGTACTTGCGCAAGTACAACAATACGATATGCGGACGCCATCCCAT
CGGAGTAATGCTAGGCGCCGTGAAGGCACTGCAGGATCAGGGCTACGACA
AGATGAGTTTCAAGTTCCTCAAGTACGCCCAGAGCAGCCAGTGTCAGGAC
ATTGAGGACTCCAGCGTTAGCTACGCCTCCGGATCGCTCGTCTTCGAGAT
GGCAAGCTTTCTAGACCAT
BO06771.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:16:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8031-RA | 888 | CG8031-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8031-RA | 1318 | CG8031-RA | 131..1015 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13008687..13009146 | 901..442 | 2300 | 100 | Minus |
3R | 32079331 | 3R | 13009382..13009494 | 329..217 | 565 | 100 | Minus |
3R | 32079331 | 3R | 13009204..13009315 | 441..330 | 560 | 100 | Minus |
3R | 32079331 | 3R | 13009689..13009771 | 147..65 | 415 | 100 | Minus |
3R | 32079331 | 3R | 13009559..13009627 | 216..148 | 345 | 100 | Minus |
3R | 32079331 | 3R | 13011131..13011180 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:16:53 has no hits.
BO06771.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:18 Download gff for
BO06771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:34 Download gff for
BO06771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 70..974 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:45 Download gff for
BO06771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 131..1015 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:18 Download gff for
BO06771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 70..974 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:01 Download gff for
BO06771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8031-RA | 131..1015 | 17..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:01 Download gff for
BO06771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13009382..13009494 | 217..329 | 100 | <- | Minus |
3R | 13009559..13009627 | 148..216 | 100 | <- | Minus |
3R | 13009689..13009770 | 66..147 | 100 | <- | Minus |
3R | 13011132..13011180 | 17..65 | 100 | | Minus |
3R | 13008684..13009146 | 442..903 | 99 | <- | Minus |
3R | 13009204..13009315 | 330..441 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:45 Download gff for
BO06771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8835411..8835492 | 66..147 | 100 | <- | Minus |
arm_3R | 8836854..8836902 | 17..65 | 100 | | Minus |
arm_3R | 8834406..8834868 | 442..903 | 99 | <- | Minus |
arm_3R | 8834926..8835037 | 330..441 | 100 | <- | Minus |
arm_3R | 8835104..8835216 | 217..329 | 100 | <- | Minus |
arm_3R | 8835281..8835349 | 148..216 | 100 | <- | Minus |
BO06771.pep Sequence
Translation from 16 to 919
> BO06771.pep
MSARRATHAGSWYTDSGAELSRQLDRWLGAADLSHGPARAIIAPHAGYTY
CGACAAFAYRQVSPVVVKRIFILGPSHHVRLRGCALSVAKKYRTPLYDLK
IDAQINSELEKTGKFSWMDMKTDEDEHSIEMHLPYIAKVMEDYKDQFTIV
PILVGSLNPEQEAQYGSLLSSYLMDPTNLFVISSDFCHWGHRFSYTYYDS
SCGAIHKSIEKLDKQGMDIIESLNPHSFTEYLRKYNNTICGRHPIGVMLG
AVKALQDQGYDKMSFKFLKYAQSSQCQDIEDSSVSYASGSLVFEMASFLD
H
BO06771.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8031-PA | 295 | CG8031-PA | 1..295 | 1..295 | 1565 | 100 | Plus |