Clone Sequence Records
BO06773.3prime Sequence
948 bp (853 high quality bases) assembled on 2005-12-03
> BO06773.3prime
ATGGTCTAGAAAGCTTGCAAGACTCCAGATGACGGTCTCTCCGGCCATGT
CCACGGTGCTCCAACCAAGGGCGTTAGCCACCAGTTGCTGCAGCTGGCGC
AGAGGAACACCAGACTTTTCCAGATCGGCGGCCAGGGAGCGGTACTCCTT
AAGTTGACGCAGATCGCGCAGCAGCCGCCGGAATTCCGAGCCGCGGATCA
GGCGAATGGCGCTCGAGAGCTCCGAGTCGGAGGAGTAGAGTTGCTGGTAC
ATATTCCTCAAGGCGGTACGGGGCAAGGCTTCACGGAGATCCTGGAGCAA
TCCGCGGACACCCGGGCGACGGTTGGGCAACTTAATGGTCGGTGGGTCGG
AAATGTGTAGGTCGAGGAACACGCGCACGTACTCCGCGTAGTAAGTGGGA
TCCAATTTAAGTCGCCGACAGACATAGTCATGGAGCAGCTGGTGCTGCTT
GGTGGCCTTCAGCAGCTGCACTTGCGTTTTGAAGTTATCGCTGCGGAGCA
ACTTGATCAACTCTTGAACCTGGGGATCCTCAACGCCATTCGCCAGGATG
TTCTTCAGTGTGGCAGCAGGCAAAAGTGGGCGAGCTACGCGGACGAGGTT
GGTGAGTCCACGCTCAGCATTGGTGGGGCACTCCTTGTTCTCCTTGGGCT
GCAGGACGAGATCCAACGTGTCTTTGGGCGTGGAGTTCTCGGCAGTGGCT
GCGGTGCCAACTGGCTTTTCGGTCACTTCCCGTGCGAATCGTACATGCTC
CTGCTCCTCCCAAACGGGCAGCCAGTTGATCTTGTGCGCATTCATTTCAA
TCTCCTCATCGGTCTCCGCAACTATGCCGGGTAGCTCTTGAGATTCATCT
GGAAAAGCATCGACAATGTAAGTGGTGGTGCTATCGGAGAGCTCCTGGGG
CTCCACGACCGATTGTCCTGCGACCAAAAGCAGCAGAAACTGAATATG
BO06773.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9021-PA | 951 | CG9021-RA | 34..948 | 933..19 | 4500 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9021-RB | 1382 | CG9021-RB | 46..976 | 948..19 | 4585 | 99.6 | Minus |
| CG9021-RA | 1201 | CG9021-RA | 46..976 | 948..19 | 4585 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5903584..5904463 | 19..898 | 4355 | 99.7 | Plus |
| 2L | 23513712 | 2L | 5904589..5904644 | 894..948 | 230 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:46:08 has no hits.
BO06773.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:12 Download gff for
BO06773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-PA | 18..951 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:16 Download gff for
BO06773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-PA | 18..951 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:34 Download gff for
BO06773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 31..961 | 19..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:22:52 Download gff for
BO06773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 46..976 | 19..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:22:52 Download gff for
BO06773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5903581..5904459 | 14..894 | 99 | <- | Plus |
| 2L | 5904590..5904644 | 895..948 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:34 Download gff for
BO06773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5903581..5904459 | 14..894 | 99 | <- | Plus |
| arm_2L | 5904590..5904644 | 895..948 | 98 | | Plus |
BO06773.5prime Sequence
940 bp (830 high quality bases) assembled on 2005-12-03
> BO06773.5prime
GAAGTTATCAGTCGACATGCATCGATTGGTGGTCATATTCAGTTTCTGCC
TGCTTTTGGTCGCAGGACAATCGGTCGTGGAGCCCCAGGAGCTCTCCGAT
AGCACCACCACTTACATTGTCGATGGCTTTCCAGATGAATCTCAAGAGCT
ACCCGGCATAGTTGCGGAGACCGATGAGGAGATTGAAATGAATGCGCACA
AGATCAACTGGCTGCCCGTTTGGGAGGAGCAGGAGCATGTACGATTCGCA
CGGGAAGTGACCGAAAAGCCAGTTGGCACCGCAGCCACTGCCGAGAACTC
CACGCCCAAAGACACGTTGGATCTCGTCCTGCAGCCCAAGGAGAACAAGG
AGTGCCCCACCAATGCTGAGCGTGGACTCACCAACCTCGTCCGCGTAGCT
CGCCCACTTTTGCCTGCTGCCACACTGAAGAACATCCTGGCGAATGGCGT
TGAGGATCCCCAGGTTCAAGAGTTGATCAAGTTGCTCCGCAGCGATAACT
TCAAAACGCAAGTGCAGCTGCTGAAGGCCACCAAGCAGCACCAGCTGCTC
CATGACTATGTCTGTCGGCGACTTAAATTGGATCCCACTTACTACGCGGA
GTACGTGCGCGTGTTCCTCGACCTACACATTTCCGACCCACCGACCATTA
AGTTGCCCAACCGTCGCCCGGGTGTCCGCGGATTGCTCCAGGATCTCCGT
GAAGCCTTGCCCCGTACCGCCTTGAGGAATATGTACCAGCAACTCTACTC
CTCCGACTCGGAGCTCTCGAGCGCCATTCGCCTGATCCGCGGCTCGGAAT
TCCGGCGGCTGCTGCGCGATCTGCGTCAACTTAAGGAGTACCGCTCCCTG
GCCGCCGATCTGGAAAAGTCTGGTGTTCCTCTGCGCCAGCTGCAGCAACT
GGTGGCTAAAGCCCTTGGTTGGAGCACCGTGGACATGGCC
BO06773.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9021-PA | 951 | CG9021-RA | 1..924 | 17..940 | 4570 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9021-RB | 1382 | CG9021-RB | 29..952 | 17..940 | 4590 | 99.8 | Plus |
| CG9021-RA | 1201 | CG9021-RA | 29..952 | 17..940 | 4590 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5903608..5904463 | 940..85 | 4250 | 99.8 | Minus |
| 2L | 23513712 | 2L | 5904589..5904661 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:22:29 has no hits.
BO06773.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:13 Download gff for
BO06773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:18 Download gff for
BO06773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:23 Download gff for
BO06773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 9..937 | 8..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:43 Download gff for
BO06773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 24..952 | 8..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:43 Download gff for
BO06773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5903608..5904459 | 89..940 | 99 | <- | Minus |
| 2L | 5904590..5904666 | 8..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:23 Download gff for
BO06773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5903608..5904459 | 89..940 | 99 | <- | Minus |
| arm_2L | 5904590..5904666 | 8..88 | 95 | | Minus |
BO06773.complete Sequence
982 bp (982 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630527
> BO06773.complete
GAAGTTATCAGTCGACATGCATCGATTGGTGGTCATATTCAGTTTCTGCC
TGCTTTTGGTCGCAGGACAATCGGTCGTGGAGCCCCAGGAGCTCTCCGAT
AGCACCACCACTTACATTGTCGATGGCTTTCCAGATGAATCTCAAGAGCT
ACCCGGCATAGTTGCGGAGACCGATGAGGAGATTGAAATGAATGCGCACA
AGATCAACTGGCTGCCCGTTTGGGAGGAGCAGGAGCATGTACGATTCGCA
CGGGAAGTGACCGAAAAGCCAGTTGGCACCGCAGCCACTGCCGAGAACTC
CACGCCCAAAGACACGTTGGATCTCGTCCTGCAGCCCAAGGAGAACAAGG
AGTGCCCCACCAATGCTGAGCGTGGACTCACCAACCTCGTCCGCGTAGCT
CGCCCACTTTTGCCTGCTGCCACACTGAAGAACATCCTGGCGAATGGCGT
TGAGGATCCCCAGGTTCAAGAGTTGATCAAGTTGCTCCGCAGCGATAACT
TCAAAACGCAAGTGCAGCTGCTGAAGGCCACCAAGCAGCACCAGCTGCTC
CATGACTATGTCTGTCGGCGACTTAAATTGGATCCCACTTACTACGCGGA
GTACGTGCGCGTGTTCCTCGACCTACACATTTCCGACCCACCGACCATTA
AGTTGCCCAACCGTCGCCCGGGTGTCCGCGGATTGCTCCAGGATCTCCGT
GAAGCCTTGCCCCGTACCGCCTTGAGGAATATGTACCAGCAACTCTACTC
CTCCGACTCGGAGCTCTCGAGCGCCATTCGCCTGATCCGCGGCTCGGAAT
TCCGGCGGCTGCTGCGCGATCTGCGTCAACTTAAGGAGTACCGCTCCCTG
GCCGCCGATCTGGAAAAGTCTGGTGTTCCTCTGCGCCAGCTGCAGCAACT
GGTGGCTAACGCCCTTGGTTGGAGCACCGTGGACATGGCCGGAGAGACCG
TCATCTGGAGTCTTGCAAGCTTTCTAGACCAT
BO06773.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9021-RB | 951 | CG9021-PB | 1..948 | 17..964 | 4725 | 99.9 | Plus |
| CG9021-RA | 951 | CG9021-PA | 1..948 | 17..964 | 4725 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9021-RB | 1382 | CG9021-RB | 29..976 | 17..964 | 4725 | 99.9 | Plus |
| CG9021-RA | 1201 | CG9021-RA | 29..976 | 17..964 | 4725 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5903584..5904463 | 964..85 | 4385 | 99.9 | Minus |
| 2L | 23513712 | 2L | 5904589..5904661 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:04:58 has no hits.
BO06773.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:19 Download gff for
BO06773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 1..951 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:35 Download gff for
BO06773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 9..961 | 8..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:22 Download gff for
BO06773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 14..961 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:19 Download gff for
BO06773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 9..961 | 8..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:59 Download gff for
BO06773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 29..976 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:59 Download gff for
BO06773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5903582..5904459 | 89..966 | 99 | <- | Minus |
| 2L | 5904590..5904661 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:22 Download gff for
BO06773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5903582..5904459 | 89..966 | 99 | <- | Minus |
| arm_2L | 5904590..5904661 | 17..88 | 100 | | Minus |
BO06773.pep Sequence
Translation from 16 to 982
> BO06773.pep
MHRLVVIFSFCLLLVAGQSVVEPQELSDSTTTYIVDGFPDESQELPGIVA
ETDEEIEMNAHKINWLPVWEEQEHVRFAREVTEKPVGTAATAENSTPKDT
LDLVLQPKENKECPTNAERGLTNLVRVARPLLPAATLKNILANGVEDPQV
QELIKLLRSDNFKTQVQLLKATKQHQLLHDYVCRRLKLDPTYYAEYVRVF
LDLHISDPPTIKLPNRRPGVRGLLQDLREALPRTALRNMYQQLYSSDSEL
SSAIRLIRGSEFRRLLRDLRQLKEYRSLAADLEKSGVPLRQLQQLVANAL
GWSTVDMAGETVIWSLASFLDH
BO06773.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9021-PB | 316 | CG9021-PB | 1..316 | 1..316 | 1610 | 100 | Plus |
| CG9021-PA | 316 | CG9021-PA | 1..316 | 1..316 | 1610 | 100 | Plus |
