Clone BO06780 Report

Search the DGRC for BO06780

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:80
Vector:pDNR-Dual
Associated Gene/Transcriptmge-RA
Protein status:BO06780.pep: validated full length
Sequenced Size:478

Clone Sequence Records

BO06780.3prime Sequence

476 bp (475 high quality bases) assembled on 2005-12-03

> BO06780.3prime
ATGGTCTAGAAAGCTTGCACGAATCAAGGGTAAGCTGGGCGACGGCCCTC
CAGGACCCATCGCACTGCCGGGTCCAAGAAGCACCTGCTTCTGCTGCGAC
TTGTGCAGCTCCTCCATCTGGGCGCGCTCCGTCTCGAAGATGACCGGGGC
GAACAGGATAACCGCGCTGGTGAAGAATATCCAGCTGGCGTTGCACGAGA
ACGAGTAGAAGCCCTTGACGCTCTTCACCGTGGCGCTGCTCACGGCGCCG
ACTGCATTCCTCACTGGCTCCGGGAACATCTCGGTTAGTCCCCAGAAGCG
CTCGGATGCCGTCTCATCGGGCTCATCATCGTAGTTCTCGCGTTGCGGAT
CATTGGAGGTGGCAGCCACTGCCCGACGCTCCGGCGTCTCGTCCTTGCTG
CCGCCTAACGACGACATGCCGCTGTCCTTTTCAATGAACTCGATTTCAGG
ATCAGAGTCCATGTCGACTGATAACT

BO06780.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14981-PA 447 mge-RA 1..444 462..19 2220 100 Minus
CG14981-PB 369 mge-RB 25..366 360..19 1710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
mge-RA 1088 CG14981-RA 271..714 462..19 2220 100 Minus
mge-RB 886 CG14981-RB 176..517 360..19 1710 100 Minus
mge-RC 1313 CG14981-RC 634..939 324..19 1530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3908226..3908531 19..324 1530 100 Plus
3L 28110227 3L 3909221..3909322 361..462 510 100 Plus
3L 28110227 3L 3909003..3909039 324..360 185 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:22:12 has no hits.

BO06780.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:20 Download gff for BO06780.3prime
Subject Subject Range Query Range Percent Splice Strand
mge-PA 1..447 15..462 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:27 Download gff for BO06780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14981-PA 1..447 15..462 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:00:54 Download gff for BO06780.3prime
Subject Subject Range Query Range Percent Splice Strand
mge-RA 271..717 15..462 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:34:23 Download gff for BO06780.3prime
Subject Subject Range Query Range Percent Splice Strand
mge-RA 271..717 15..462 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:34:23 Download gff for BO06780.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3908223..3908531 15..324 99 <- Plus
3L 3909004..3909039 325..360 100 <- Plus
3L 3909221..3909322 361..462 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:00:54 Download gff for BO06780.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3908223..3908531 15..324 99 <- Plus
arm_3L 3909004..3909039 325..360 100 <- Plus
arm_3L 3909221..3909322 361..462 100   Plus

BO06780.5prime Sequence

476 bp (475 high quality bases) assembled on 2005-12-03

> BO06780.5prime
GAAGTTATCAGTCGACATGGACTCTGATCCTGAAATCGAGTTCATTGAAA
AGGACAGCGGCATGTCGTCGTTAGGCGGCAGCAAGGACGAGACGCCGGAG
CGTCGGGCAGTGGCTGCCACCTCCAATGATCCGCAACGCGAGAACTACGA
TGATGAGCCCGATGAGACGGCATCCGAGCGCTTCTGGGGACTAACCGAGA
TGTTCCCGGAGCCAGTGAGGAATGCAGTCGGCGCCGTGAGCAGCGCCACG
GTGAAGAGCGTCAAGGGCTTCTACTCGTTCTCGTGCAACGCCAGCTGGAT
ATTCTTCACCAGCGCGGTTATCCTGTTCGCCCCGGTCATCTTCGAGACGG
AGCGCGCCCAGATGGAGGAGCTGCACAAGTCGCAGCAGAAGCAGGTGCTT
CTTGGACCCGGCAGTGCGATGGGTCCTGGAGGGCCGTCGCCCAGCTTACC
CTTGATTCGTGCAAGCTTTCTAGACC

BO06780.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14981-PA 447 mge-RA 1..444 17..460 2220 100 Plus
CG14981-PB 369 mge-RB 25..366 119..460 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
mge-RA 1088 CG14981-RA 271..714 17..460 2220 100 Plus
mge-RB 886 CG14981-RB 176..517 119..460 1710 100 Plus
mge-RC 1313 CG14981-RC 634..939 155..460 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3908226..3908531 460..155 1530 100 Minus
3L 28110227 3L 3909221..3909322 118..17 510 100 Minus
3L 28110227 3L 3909003..3909039 155..119 185 100 Minus
Blast to na_te.dros performed on 2015-02-12 09:49:56 has no hits.

BO06780.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:21 Download gff for BO06780.5prime
Subject Subject Range Query Range Percent Splice Strand
mge-PA 1..447 17..464 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:28 Download gff for BO06780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14981-PA 1..447 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:03 Download gff for BO06780.5prime
Subject Subject Range Query Range Percent Splice Strand
mge-RA 271..717 17..464 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:07 Download gff for BO06780.5prime
Subject Subject Range Query Range Percent Splice Strand
mge-RA 271..717 17..464 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:07 Download gff for BO06780.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3908223..3908531 155..464 99 <- Minus
3L 3909004..3909039 119..154 100 <- Minus
3L 3909221..3909322 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:03 Download gff for BO06780.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3908223..3908531 155..464 99 <- Minus
arm_3L 3909004..3909039 119..154 100 <- Minus
arm_3L 3909221..3909322 17..118 100   Minus

BO06780.complete Sequence

478 bp (478 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630528

> BO06780.complete
GAAGTTATCAGTCGACATGGACTCTGATCCTGAAATCGAGTTCATTGAAA
AGGACAGCGGCATGTCGTCGTTAGGCGGCAGCAAGGACGAGACGCCGGAG
CGTCGGGCAGTGGCTGCCACCTCCAATGATCCGCAACGCGAGAACTACGA
TGATGAGCCCGATGAGACGGCATCCGAGCGCTTCTGGGGACTAACCGAGA
TGTTCCCGGAGCCAGTGAGGAATGCAGTCGGCGCCGTGAGCAGCGCCACG
GTGAAGAGCGTCAAGGGCTTCTACTCGTTCTCGTGCAACGCCAGCTGGAT
ATTCTTCACCAGCGCGGTTATCCTGTTCGCCCCGGTCATCTTCGAGACGG
AGCGCGCCCAGATGGAGGAGCTGCACAAGTCGCAGCAGAAGCAGGTGCTT
CTTGGACCCGGCAGTGCGATGGGTCCTGGAGGGCCGTCGCCCAGCTTACC
CTTGATTCGTGCAAGCTTTCTAGACCAT

BO06780.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
mge-RA 447 CG14981-PA 1..444 17..460 2220 100 Plus
mge-RB 369 CG14981-PB 25..366 119..460 1710 100 Plus
mge-RC 159 CG14981-PC 1..139 17..155 695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
mge-RA 1088 CG14981-RA 271..714 17..460 2220 100 Plus
mge-RB 886 CG14981-RB 176..517 119..460 1710 100 Plus
mge-RC 1313 CG14981-RC 634..939 155..460 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3908226..3908531 460..155 1530 100 Minus
3L 28110227 3L 3909221..3909322 118..17 510 100 Minus
3L 28110227 3L 3909003..3909039 155..119 185 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:15:56 has no hits.

BO06780.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:20 Download gff for BO06780.complete
Subject Subject Range Query Range Percent Splice Strand
mge-RA 1..447 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:37 Download gff for BO06780.complete
Subject Subject Range Query Range Percent Splice Strand
mge-RA 269..715 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:25 Download gff for BO06780.complete
Subject Subject Range Query Range Percent Splice Strand
mge-RA 271..714 17..462 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:21 Download gff for BO06780.complete
Subject Subject Range Query Range Percent Splice Strand
mge-RA 269..715 17..464 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:17 Download gff for BO06780.complete
Subject Subject Range Query Range Percent Splice Strand
mge-RA 271..714 17..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:17 Download gff for BO06780.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3908224..3908531 155..462 99 <- Minus
3L 3909004..3909039 119..154 100 <- Minus
3L 3909221..3909322 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:25 Download gff for BO06780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3909221..3909322 17..118 100   Minus
arm_3L 3908224..3908531 155..462 99 <- Minus
arm_3L 3909004..3909039 119..154 100 <- Minus

BO06780.pep Sequence

Translation from 16 to 478

> BO06780.pep
MDSDPEIEFIEKDSGMSSLGGSKDETPERRAVAATSNDPQRENYDDEPDE
TASERFWGLTEMFPEPVRNAVGAVSSATVKSVKGFYSFSCNASWIFFTSA
VILFAPVIFETERAQMEELHKSQQKQVLLGPGSAMGPGGPSPSLPLIRAS
FLDH

BO06780.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
mge-PA 148 CG14981-PA 1..148 1..148 766 100 Plus
mge-PB 122 CG14981-PB 9..122 35..148 596 100 Plus
mge-PC 52 CG14981-PC 1..46 1..46 238 100 Plus