Clone Sequence Records
BO06780.3prime Sequence
476 bp (475 high quality bases) assembled on 2005-12-03
> BO06780.3prime
ATGGTCTAGAAAGCTTGCACGAATCAAGGGTAAGCTGGGCGACGGCCCTC
CAGGACCCATCGCACTGCCGGGTCCAAGAAGCACCTGCTTCTGCTGCGAC
TTGTGCAGCTCCTCCATCTGGGCGCGCTCCGTCTCGAAGATGACCGGGGC
GAACAGGATAACCGCGCTGGTGAAGAATATCCAGCTGGCGTTGCACGAGA
ACGAGTAGAAGCCCTTGACGCTCTTCACCGTGGCGCTGCTCACGGCGCCG
ACTGCATTCCTCACTGGCTCCGGGAACATCTCGGTTAGTCCCCAGAAGCG
CTCGGATGCCGTCTCATCGGGCTCATCATCGTAGTTCTCGCGTTGCGGAT
CATTGGAGGTGGCAGCCACTGCCCGACGCTCCGGCGTCTCGTCCTTGCTG
CCGCCTAACGACGACATGCCGCTGTCCTTTTCAATGAACTCGATTTCAGG
ATCAGAGTCCATGTCGACTGATAACT
BO06780.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14981-PA | 447 | mge-RA | 1..444 | 462..19 | 2220 | 100 | Minus |
CG14981-PB | 369 | mge-RB | 25..366 | 360..19 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mge-RA | 1088 | CG14981-RA | 271..714 | 462..19 | 2220 | 100 | Minus |
mge-RB | 886 | CG14981-RB | 176..517 | 360..19 | 1710 | 100 | Minus |
mge-RC | 1313 | CG14981-RC | 634..939 | 324..19 | 1530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3908226..3908531 | 19..324 | 1530 | 100 | Plus |
3L | 28110227 | 3L | 3909221..3909322 | 361..462 | 510 | 100 | Plus |
3L | 28110227 | 3L | 3909003..3909039 | 324..360 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:22:12 has no hits.
BO06780.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:20 Download gff for
BO06780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-PA | 1..447 | 15..462 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:27 Download gff for
BO06780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14981-PA | 1..447 | 15..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:00:54 Download gff for
BO06780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 271..717 | 15..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:34:23 Download gff for
BO06780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 271..717 | 15..462 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:34:23 Download gff for
BO06780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3908223..3908531 | 15..324 | 99 | <- | Plus |
3L | 3909004..3909039 | 325..360 | 100 | <- | Plus |
3L | 3909221..3909322 | 361..462 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:00:54 Download gff for
BO06780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3908223..3908531 | 15..324 | 99 | <- | Plus |
arm_3L | 3909004..3909039 | 325..360 | 100 | <- | Plus |
arm_3L | 3909221..3909322 | 361..462 | 100 | | Plus |
BO06780.5prime Sequence
476 bp (475 high quality bases) assembled on 2005-12-03
> BO06780.5prime
GAAGTTATCAGTCGACATGGACTCTGATCCTGAAATCGAGTTCATTGAAA
AGGACAGCGGCATGTCGTCGTTAGGCGGCAGCAAGGACGAGACGCCGGAG
CGTCGGGCAGTGGCTGCCACCTCCAATGATCCGCAACGCGAGAACTACGA
TGATGAGCCCGATGAGACGGCATCCGAGCGCTTCTGGGGACTAACCGAGA
TGTTCCCGGAGCCAGTGAGGAATGCAGTCGGCGCCGTGAGCAGCGCCACG
GTGAAGAGCGTCAAGGGCTTCTACTCGTTCTCGTGCAACGCCAGCTGGAT
ATTCTTCACCAGCGCGGTTATCCTGTTCGCCCCGGTCATCTTCGAGACGG
AGCGCGCCCAGATGGAGGAGCTGCACAAGTCGCAGCAGAAGCAGGTGCTT
CTTGGACCCGGCAGTGCGATGGGTCCTGGAGGGCCGTCGCCCAGCTTACC
CTTGATTCGTGCAAGCTTTCTAGACC
BO06780.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14981-PA | 447 | mge-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
CG14981-PB | 369 | mge-RB | 25..366 | 119..460 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:49:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mge-RA | 1088 | CG14981-RA | 271..714 | 17..460 | 2220 | 100 | Plus |
mge-RB | 886 | CG14981-RB | 176..517 | 119..460 | 1710 | 100 | Plus |
mge-RC | 1313 | CG14981-RC | 634..939 | 155..460 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3908226..3908531 | 460..155 | 1530 | 100 | Minus |
3L | 28110227 | 3L | 3909221..3909322 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 3909003..3909039 | 155..119 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:49:56 has no hits.
BO06780.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:21 Download gff for
BO06780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-PA | 1..447 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:28 Download gff for
BO06780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14981-PA | 1..447 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:03 Download gff for
BO06780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 271..717 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:07 Download gff for
BO06780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 271..717 | 17..464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:07 Download gff for
BO06780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3908223..3908531 | 155..464 | 99 | <- | Minus |
3L | 3909004..3909039 | 119..154 | 100 | <- | Minus |
3L | 3909221..3909322 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:03 Download gff for
BO06780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3908223..3908531 | 155..464 | 99 | <- | Minus |
arm_3L | 3909004..3909039 | 119..154 | 100 | <- | Minus |
arm_3L | 3909221..3909322 | 17..118 | 100 | | Minus |
BO06780.complete Sequence
478 bp (478 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630528
> BO06780.complete
GAAGTTATCAGTCGACATGGACTCTGATCCTGAAATCGAGTTCATTGAAA
AGGACAGCGGCATGTCGTCGTTAGGCGGCAGCAAGGACGAGACGCCGGAG
CGTCGGGCAGTGGCTGCCACCTCCAATGATCCGCAACGCGAGAACTACGA
TGATGAGCCCGATGAGACGGCATCCGAGCGCTTCTGGGGACTAACCGAGA
TGTTCCCGGAGCCAGTGAGGAATGCAGTCGGCGCCGTGAGCAGCGCCACG
GTGAAGAGCGTCAAGGGCTTCTACTCGTTCTCGTGCAACGCCAGCTGGAT
ATTCTTCACCAGCGCGGTTATCCTGTTCGCCCCGGTCATCTTCGAGACGG
AGCGCGCCCAGATGGAGGAGCTGCACAAGTCGCAGCAGAAGCAGGTGCTT
CTTGGACCCGGCAGTGCGATGGGTCCTGGAGGGCCGTCGCCCAGCTTACC
CTTGATTCGTGCAAGCTTTCTAGACCAT
BO06780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mge-RA | 447 | CG14981-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
mge-RB | 369 | CG14981-PB | 25..366 | 119..460 | 1710 | 100 | Plus |
mge-RC | 159 | CG14981-PC | 1..139 | 17..155 | 695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mge-RA | 1088 | CG14981-RA | 271..714 | 17..460 | 2220 | 100 | Plus |
mge-RB | 886 | CG14981-RB | 176..517 | 119..460 | 1710 | 100 | Plus |
mge-RC | 1313 | CG14981-RC | 634..939 | 155..460 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3908226..3908531 | 460..155 | 1530 | 100 | Minus |
3L | 28110227 | 3L | 3909221..3909322 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 3909003..3909039 | 155..119 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:15:56 has no hits.
BO06780.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:20 Download gff for
BO06780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 1..447 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:37 Download gff for
BO06780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 269..715 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:25 Download gff for
BO06780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 271..714 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:21 Download gff for
BO06780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 269..715 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:17 Download gff for
BO06780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mge-RA | 271..714 | 17..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:17 Download gff for
BO06780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3908224..3908531 | 155..462 | 99 | <- | Minus |
3L | 3909004..3909039 | 119..154 | 100 | <- | Minus |
3L | 3909221..3909322 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:25 Download gff for
BO06780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3909221..3909322 | 17..118 | 100 | | Minus |
arm_3L | 3908224..3908531 | 155..462 | 99 | <- | Minus |
arm_3L | 3909004..3909039 | 119..154 | 100 | <- | Minus |
BO06780.pep Sequence
Translation from 16 to 478
> BO06780.pep
MDSDPEIEFIEKDSGMSSLGGSKDETPERRAVAATSNDPQRENYDDEPDE
TASERFWGLTEMFPEPVRNAVGAVSSATVKSVKGFYSFSCNASWIFFTSA
VILFAPVIFETERAQMEELHKSQQKQVLLGPGSAMGPGGPSPSLPLIRAS
FLDH
BO06780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mge-PA | 148 | CG14981-PA | 1..148 | 1..148 | 766 | 100 | Plus |
mge-PB | 122 | CG14981-PB | 9..122 | 35..148 | 596 | 100 | Plus |
mge-PC | 52 | CG14981-PC | 1..46 | 1..46 | 238 | 100 | Plus |