Clone BO06781 Report

Search the DGRC for BO06781

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG17834-RB
Protein status:BO06781.pep: validated full length
Sequenced Size:658

Clone Sequence Records

BO06781.3prime Sequence

656 bp (655 high quality bases) assembled on 2005-12-03

> BO06781.3prime
ATGGTCTAGAAAGCTTGCGTTCAGATAGAACTTGACCTTGGGCACACCGC
TGGATACGATGCTGCTGCTGCGGGTGCTCTTGCCGCTGCTTTTACCATTA
GCAGCACCACCCAAAAGTGGGGTGTGTGCACCACTGGGGCCATCATTACC
TTCCAGACGTCGCAGCAATCGATCCTGATCGCTGAGCCGCGGAGTTGTCG
GCATTTCGCGATTCGGCGAATGGATTCCGGCCAGATAGGTCTTGGTGCTG
ATCCGGTTCAGCTTGGTGGGCTGATGGTCCTGGAAGATTTGCGAATTGGC
AAAAACCGCCAGTATCTCCGGTCCCAGGTTGGGCACATTGATCTGTGTCT
CCCGACGATAGTCCTCCTCGTGGATCTTGGCGCTCATTAGGCTCAGGCCC
AAGCTCGAGTTGCCCTGCCTCATTTGCGGCTGATCGCAAATCGGTTGGGG
CACCGTCAGCGAATTATTATTATCCACCGATGTCGGTTGTATGCGTCCAA
TGATCTGGCCATTTTTCCTGGACGCCAAGTAGTCCTCGTCCTCCTCGGGA
TTGTAGTTGGCGATGGATTCGTCGTAGCAGAAACGCTCCTCGAAGCAATT
CCAGTAGAAATCTTCCCAGCAGTTTTGACAGCAGCGGCACATGTCGACTG
ATAACT

BO06781.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17834-PB 627 CG17834-RB 1..624 642..19 3120 100 Minus
CG17834-PD 627 CG17834-RD 1..624 642..19 3120 100 Minus
CG17834-PA 1272 CG17834-RA 1..494 642..149 2470 100 Minus
CG17834-PC 1272 CG17834-RC 1..494 642..149 2470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17834-RF 1331 CG17834-RF 370..993 642..19 3120 100 Minus
CG17834-RD 1164 CG17834-RD 203..826 642..19 3120 100 Minus
CG17834-RB 1236 CG17834-RB 275..898 642..19 3120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8537229..8537594 384..19 1830 100 Minus
2L 23513712 2L 8536893..8537071 561..383 895 100 Minus
2L 23513712 2L 8536207..8536268 622..561 310 100 Minus
Blast to na_te.dros performed 2015-02-12 23:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6767 93..58 117 80.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6788 93..58 117 80.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6809 93..58 117 80.6 Minus
roo 9092 roo DM_ROO 9092bp 1107..1148 99..58 111 73.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2367 95..58 109 76.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2821..2858 93..56 109 76.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2387 90..32 106 64.4 Minus

BO06781.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:21 Download gff for BO06781.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-PB 1..627 16..642 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:29 Download gff for BO06781.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-PD 1..627 16..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:19:41 Download gff for BO06781.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-RB 268..902 15..650 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:53 Download gff for BO06781.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-RB 268..902 15..650 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:53 Download gff for BO06781.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8536207..8536268 561..622 100 -> Minus
2L 8536894..8537071 383..560 100 -> Minus
2L 8537231..8537598 15..382 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:19:41 Download gff for BO06781.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8536207..8536268 561..622 100 -> Minus
arm_2L 8536894..8537071 383..560 100 -> Minus
arm_2L 8537231..8537598 15..382 99   Minus

BO06781.5prime Sequence

656 bp (655 high quality bases) assembled on 2005-12-03

> BO06781.5prime
GAAGTTATCAGTCGACATGTGCCGCTGCTGTCAAAACTGCTGGGAAGATT
TCTACTGGAATTGCTTCGAGGAGCGTTTCTGCTACGACGAATCCATCGCC
AACTACAATCCCGAGGAGGACGAGGACTACTTGGCGTCCAGGAAAAATGG
CCAGATCATTGGACGCATACAACCGACATCGGTGGATAATAATAATTCGC
TGACGGTGCCCCAACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAAC
TCGAGCTTGGGCCTGAGCCTAATGAGCGCCAAGATCCACGAGGAGGACTA
TCGTCGGGAGACACAGATCAATGTGCCCAACCTGGGACCGGAGATACTGG
CGGTTTTTGCCAATTCGCAAATCTTCCAGGACCATCAGCCCACCAAGCTG
AACCGGATCAGCACCAAGACCTATCTGGCCGGAATCCATTCGCCGAATCG
CGAAATGCCGACAACTCCGCGGCTCAGCGATCAGGATCGATTGCTGCGAC
GTCTGGAAGGTAATGATGGCCCCAGTGGTGCACACACCCCACTTTTGGGT
GGTGCTGCTAATGGTAAAAGCAGCGGCAAGAGCACCCGCAGCAGCAGCAT
CGTATCCAGCGGTGTGCCCAAGGTCAAGTTCTATCTGAACGCAAGCTTTC
TAGACC

BO06781.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17834-PB 627 CG17834-RB 1..624 17..640 3120 100 Plus
CG17834-PD 627 CG17834-RD 1..624 17..640 3120 100 Plus
CG17834-PA 1272 CG17834-RA 1..494 17..510 2470 100 Plus
CG17834-PC 1272 CG17834-RC 1..494 17..510 2470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17834-RF 1331 CG17834-RF 370..993 17..640 3120 100 Plus
CG17834-RD 1164 CG17834-RD 203..826 17..640 3120 100 Plus
CG17834-RB 1236 CG17834-RB 275..898 17..640 3120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8537229..8537594 275..640 1830 100 Plus
2L 23513712 2L 8536893..8537071 98..276 895 100 Plus
2L 23513712 2L 8536207..8536268 37..98 310 100 Plus
Blast to na_te.dros performed 2015-02-12 15:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6767 566..601 117 80.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6788 566..601 117 80.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6809 566..601 117 80.6 Plus
roo 9092 roo DM_ROO 9092bp 1107..1148 560..601 111 73.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2367 564..601 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2821..2858 566..603 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2387 569..627 106 64.4 Plus

BO06781.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:23 Download gff for BO06781.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-PB 1..627 17..643 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:31 Download gff for BO06781.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-PD 1..627 17..643 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:39 Download gff for BO06781.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-RB 268..902 9..644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:18 Download gff for BO06781.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17834-RB 268..902 9..644 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:18 Download gff for BO06781.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8536207..8536268 37..98 100 -> Plus
2L 8536894..8537071 99..276 100 -> Plus
2L 8537231..8537598 277..644 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:39 Download gff for BO06781.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8536207..8536268 37..98 100 -> Plus
arm_2L 8536894..8537071 99..276 100 -> Plus
arm_2L 8537231..8537598 277..644 99   Plus

BO06781.complete Sequence

658 bp (658 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630529

> BO06781.complete
GAAGTTATCAGTCGACATGTGCCGCTGCTGTCAAAACTGCTGGGAAGATT
TCTACTGGAATTGCTTCGAGGAGCGTTTCTGCTACGACGAATCCATCGCC
AACTACAATCCCGAGGAGGACGAGGACTACTTGGCGTCCAGGAAAAATGG
CCAGATCATTGGACGCATACAACCGACATCGGTGGATAATAATAATTCGC
TGACGGTGCCCCAACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAAC
TCGAGCTTGGGCCTGAGCCTAATGAGCGCCAAGATCCACGAGGAGGACTA
TCGTCGGGAGACACAGATCAATGTGCCCAACCTGGGACCGGAGATACTGG
CGGTTTTTGCCAATTCGCAAATCTTCCAGGACCATCAGCCCACCAAGCTG
AACCGGATCAGCACCAAGACCTATCTGGCCGGAATCCATTCGCCGAATCG
CGAAATGCCGACAACTCCGCGGCTCAGCGATCAGGATCGATTGCTGCGAC
GTCTGGAAGGTAATGATGGCCCCAGTGGTGCACACACCCCACTTTTGGGT
GGTGCTGCTAATGGTAAAAGCAGCGGCAAGAGCACCCGCAGCAGCAGCAT
CGTATCCAGCGGTGTGCCCAAGGTCAAGTTCTATCTGAACGCAAGCTTTC
TAGACCAT

BO06781.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17834-RF 627 CG17834-PF 1..624 17..640 3120 100 Plus
CG17834-RD 627 CG17834-PD 1..624 17..640 3120 100 Plus
CG17834-RB 627 CG17834-PB 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17834-RF 1331 CG17834-RF 370..993 17..640 3120 100 Plus
CG17834-RD 1164 CG17834-RD 203..826 17..640 3120 100 Plus
CG17834-RB 1236 CG17834-RB 275..898 17..640 3120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8537229..8537594 275..640 1830 100 Plus
2L 23513712 2L 8536893..8537071 98..276 895 100 Plus
2L 23513712 2L 8536207..8536268 37..98 310 100 Plus
Blast to na_te.dros performed 2014-11-27 20:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6767 566..601 117 80.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6788 566..601 117 80.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6809 566..601 117 80.6 Plus
roo 9092 roo DM_ROO 9092bp 1107..1148 560..601 111 73.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2367 564..601 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2821..2858 566..603 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2387 569..627 106 64.4 Plus

BO06781.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:34 Download gff for BO06781.complete
Subject Subject Range Query Range Percent Splice Strand
CG17834-RD 1..627 17..643 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:43 Download gff for BO06781.complete
Subject Subject Range Query Range Percent Splice Strand
CG17834-RD 185..819 9..644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:52 Download gff for BO06781.complete
Subject Subject Range Query Range Percent Splice Strand
CG17834-RB 275..898 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:34 Download gff for BO06781.complete
Subject Subject Range Query Range Percent Splice Strand
CG17834-RD 185..819 9..644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:38 Download gff for BO06781.complete
Subject Subject Range Query Range Percent Splice Strand
CG17834-RB 275..898 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:38 Download gff for BO06781.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8536060..8536079 17..36 100 -> Plus
2L 8536207..8536268 37..98 100 -> Plus
2L 8536894..8537071 99..276 100 -> Plus
2L 8537231..8537594 277..642 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:52 Download gff for BO06781.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8536894..8537071 99..276 100 -> Plus
arm_2L 8536060..8536079 17..36 100 -> Plus
arm_2L 8536207..8536268 37..98 100 -> Plus
arm_2L 8537231..8537594 277..642 99   Plus

BO06781.pep Sequence

Translation from 16 to 658

> BO06781.pep
MCRCCQNCWEDFYWNCFEERFCYDESIANYNPEEDEDYLASRKNGQIIGR
IQPTSVDNNNSLTVPQPICDQPQMRQGNSSLGLSLMSAKIHEEDYRRETQ
INVPNLGPEILAVFANSQIFQDHQPTKLNRISTKTYLAGIHSPNREMPTT
PRLSDQDRLLRRLEGNDGPSGAHTPLLGGAANGKSSGKSTRSSSIVSSGV
PKVKFYLNASFLDH

BO06781.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17834-PF 208 CG17834-PF 1..208 1..208 1117 100 Plus
CG17834-PD 208 CG17834-PD 1..208 1..208 1117 100 Plus
CG17834-PB 208 CG17834-PB 1..208 1..208 1117 100 Plus
CG17834-PE 423 CG17834-PE 1..166 1..166 899 99.4 Plus
CG17834-PC 423 CG17834-PC 1..166 1..166 899 99.4 Plus