Clone Sequence Records
BO06781.3prime Sequence
656 bp (655 high quality bases) assembled on 2005-12-03
> BO06781.3prime
ATGGTCTAGAAAGCTTGCGTTCAGATAGAACTTGACCTTGGGCACACCGC
TGGATACGATGCTGCTGCTGCGGGTGCTCTTGCCGCTGCTTTTACCATTA
GCAGCACCACCCAAAAGTGGGGTGTGTGCACCACTGGGGCCATCATTACC
TTCCAGACGTCGCAGCAATCGATCCTGATCGCTGAGCCGCGGAGTTGTCG
GCATTTCGCGATTCGGCGAATGGATTCCGGCCAGATAGGTCTTGGTGCTG
ATCCGGTTCAGCTTGGTGGGCTGATGGTCCTGGAAGATTTGCGAATTGGC
AAAAACCGCCAGTATCTCCGGTCCCAGGTTGGGCACATTGATCTGTGTCT
CCCGACGATAGTCCTCCTCGTGGATCTTGGCGCTCATTAGGCTCAGGCCC
AAGCTCGAGTTGCCCTGCCTCATTTGCGGCTGATCGCAAATCGGTTGGGG
CACCGTCAGCGAATTATTATTATCCACCGATGTCGGTTGTATGCGTCCAA
TGATCTGGCCATTTTTCCTGGACGCCAAGTAGTCCTCGTCCTCCTCGGGA
TTGTAGTTGGCGATGGATTCGTCGTAGCAGAAACGCTCCTCGAAGCAATT
CCAGTAGAAATCTTCCCAGCAGTTTTGACAGCAGCGGCACATGTCGACTG
ATAACT
BO06781.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17834-PB | 627 | CG17834-RB | 1..624 | 642..19 | 3120 | 100 | Minus |
CG17834-PD | 627 | CG17834-RD | 1..624 | 642..19 | 3120 | 100 | Minus |
CG17834-PA | 1272 | CG17834-RA | 1..494 | 642..149 | 2470 | 100 | Minus |
CG17834-PC | 1272 | CG17834-RC | 1..494 | 642..149 | 2470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17834-RF | 1331 | CG17834-RF | 370..993 | 642..19 | 3120 | 100 | Minus |
CG17834-RD | 1164 | CG17834-RD | 203..826 | 642..19 | 3120 | 100 | Minus |
CG17834-RB | 1236 | CG17834-RB | 275..898 | 642..19 | 3120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8537229..8537594 | 384..19 | 1830 | 100 | Minus |
2L | 23513712 | 2L | 8536893..8537071 | 561..383 | 895 | 100 | Minus |
2L | 23513712 | 2L | 8536207..8536268 | 622..561 | 310 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 23:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6767 | 93..58 | 117 | 80.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6788 | 93..58 | 117 | 80.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6809 | 93..58 | 117 | 80.6 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1107..1148 | 99..58 | 111 | 73.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2367 | 95..58 | 109 | 76.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..2858 | 93..56 | 109 | 76.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2387 | 90..32 | 106 | 64.4 | Minus |
BO06781.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:21 Download gff for
BO06781.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-PB | 1..627 | 16..642 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:29 Download gff for
BO06781.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-PD | 1..627 | 16..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:19:41 Download gff for
BO06781.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RB | 268..902 | 15..650 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:53 Download gff for
BO06781.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RB | 268..902 | 15..650 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:53 Download gff for
BO06781.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8536207..8536268 | 561..622 | 100 | -> | Minus |
2L | 8536894..8537071 | 383..560 | 100 | -> | Minus |
2L | 8537231..8537598 | 15..382 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:19:41 Download gff for
BO06781.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8536207..8536268 | 561..622 | 100 | -> | Minus |
arm_2L | 8536894..8537071 | 383..560 | 100 | -> | Minus |
arm_2L | 8537231..8537598 | 15..382 | 99 | | Minus |
BO06781.5prime Sequence
656 bp (655 high quality bases) assembled on 2005-12-03
> BO06781.5prime
GAAGTTATCAGTCGACATGTGCCGCTGCTGTCAAAACTGCTGGGAAGATT
TCTACTGGAATTGCTTCGAGGAGCGTTTCTGCTACGACGAATCCATCGCC
AACTACAATCCCGAGGAGGACGAGGACTACTTGGCGTCCAGGAAAAATGG
CCAGATCATTGGACGCATACAACCGACATCGGTGGATAATAATAATTCGC
TGACGGTGCCCCAACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAAC
TCGAGCTTGGGCCTGAGCCTAATGAGCGCCAAGATCCACGAGGAGGACTA
TCGTCGGGAGACACAGATCAATGTGCCCAACCTGGGACCGGAGATACTGG
CGGTTTTTGCCAATTCGCAAATCTTCCAGGACCATCAGCCCACCAAGCTG
AACCGGATCAGCACCAAGACCTATCTGGCCGGAATCCATTCGCCGAATCG
CGAAATGCCGACAACTCCGCGGCTCAGCGATCAGGATCGATTGCTGCGAC
GTCTGGAAGGTAATGATGGCCCCAGTGGTGCACACACCCCACTTTTGGGT
GGTGCTGCTAATGGTAAAAGCAGCGGCAAGAGCACCCGCAGCAGCAGCAT
CGTATCCAGCGGTGTGCCCAAGGTCAAGTTCTATCTGAACGCAAGCTTTC
TAGACC
BO06781.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17834-PB | 627 | CG17834-RB | 1..624 | 17..640 | 3120 | 100 | Plus |
CG17834-PD | 627 | CG17834-RD | 1..624 | 17..640 | 3120 | 100 | Plus |
CG17834-PA | 1272 | CG17834-RA | 1..494 | 17..510 | 2470 | 100 | Plus |
CG17834-PC | 1272 | CG17834-RC | 1..494 | 17..510 | 2470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17834-RF | 1331 | CG17834-RF | 370..993 | 17..640 | 3120 | 100 | Plus |
CG17834-RD | 1164 | CG17834-RD | 203..826 | 17..640 | 3120 | 100 | Plus |
CG17834-RB | 1236 | CG17834-RB | 275..898 | 17..640 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8537229..8537594 | 275..640 | 1830 | 100 | Plus |
2L | 23513712 | 2L | 8536893..8537071 | 98..276 | 895 | 100 | Plus |
2L | 23513712 | 2L | 8536207..8536268 | 37..98 | 310 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 15:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6767 | 566..601 | 117 | 80.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6788 | 566..601 | 117 | 80.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6809 | 566..601 | 117 | 80.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1107..1148 | 560..601 | 111 | 73.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2367 | 564..601 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..2858 | 566..603 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2387 | 569..627 | 106 | 64.4 | Plus |
BO06781.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:23 Download gff for
BO06781.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-PB | 1..627 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:31 Download gff for
BO06781.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-PD | 1..627 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:39 Download gff for
BO06781.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RB | 268..902 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:18 Download gff for
BO06781.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RB | 268..902 | 9..644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:18 Download gff for
BO06781.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8536207..8536268 | 37..98 | 100 | -> | Plus |
2L | 8536894..8537071 | 99..276 | 100 | -> | Plus |
2L | 8537231..8537598 | 277..644 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:39 Download gff for
BO06781.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8536207..8536268 | 37..98 | 100 | -> | Plus |
arm_2L | 8536894..8537071 | 99..276 | 100 | -> | Plus |
arm_2L | 8537231..8537598 | 277..644 | 99 | | Plus |
BO06781.complete Sequence
658 bp (658 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630529
> BO06781.complete
GAAGTTATCAGTCGACATGTGCCGCTGCTGTCAAAACTGCTGGGAAGATT
TCTACTGGAATTGCTTCGAGGAGCGTTTCTGCTACGACGAATCCATCGCC
AACTACAATCCCGAGGAGGACGAGGACTACTTGGCGTCCAGGAAAAATGG
CCAGATCATTGGACGCATACAACCGACATCGGTGGATAATAATAATTCGC
TGACGGTGCCCCAACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAAC
TCGAGCTTGGGCCTGAGCCTAATGAGCGCCAAGATCCACGAGGAGGACTA
TCGTCGGGAGACACAGATCAATGTGCCCAACCTGGGACCGGAGATACTGG
CGGTTTTTGCCAATTCGCAAATCTTCCAGGACCATCAGCCCACCAAGCTG
AACCGGATCAGCACCAAGACCTATCTGGCCGGAATCCATTCGCCGAATCG
CGAAATGCCGACAACTCCGCGGCTCAGCGATCAGGATCGATTGCTGCGAC
GTCTGGAAGGTAATGATGGCCCCAGTGGTGCACACACCCCACTTTTGGGT
GGTGCTGCTAATGGTAAAAGCAGCGGCAAGAGCACCCGCAGCAGCAGCAT
CGTATCCAGCGGTGTGCCCAAGGTCAAGTTCTATCTGAACGCAAGCTTTC
TAGACCAT
BO06781.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17834-RF | 627 | CG17834-PF | 1..624 | 17..640 | 3120 | 100 | Plus |
CG17834-RD | 627 | CG17834-PD | 1..624 | 17..640 | 3120 | 100 | Plus |
CG17834-RB | 627 | CG17834-PB | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17834-RF | 1331 | CG17834-RF | 370..993 | 17..640 | 3120 | 100 | Plus |
CG17834-RD | 1164 | CG17834-RD | 203..826 | 17..640 | 3120 | 100 | Plus |
CG17834-RB | 1236 | CG17834-RB | 275..898 | 17..640 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8537229..8537594 | 275..640 | 1830 | 100 | Plus |
2L | 23513712 | 2L | 8536893..8537071 | 98..276 | 895 | 100 | Plus |
2L | 23513712 | 2L | 8536207..8536268 | 37..98 | 310 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6767 | 566..601 | 117 | 80.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6788 | 566..601 | 117 | 80.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6809 | 566..601 | 117 | 80.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1107..1148 | 560..601 | 111 | 73.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2367 | 564..601 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..2858 | 566..603 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2387 | 569..627 | 106 | 64.4 | Plus |
BO06781.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:34 Download gff for
BO06781.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RD | 1..627 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:43 Download gff for
BO06781.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RD | 185..819 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:52 Download gff for
BO06781.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RB | 275..898 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:34 Download gff for
BO06781.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RD | 185..819 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:38 Download gff for
BO06781.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17834-RB | 275..898 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:38 Download gff for
BO06781.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8536060..8536079 | 17..36 | 100 | -> | Plus |
2L | 8536207..8536268 | 37..98 | 100 | -> | Plus |
2L | 8536894..8537071 | 99..276 | 100 | -> | Plus |
2L | 8537231..8537594 | 277..642 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:52 Download gff for
BO06781.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8536894..8537071 | 99..276 | 100 | -> | Plus |
arm_2L | 8536060..8536079 | 17..36 | 100 | -> | Plus |
arm_2L | 8536207..8536268 | 37..98 | 100 | -> | Plus |
arm_2L | 8537231..8537594 | 277..642 | 99 | | Plus |
BO06781.pep Sequence
Translation from 16 to 658
> BO06781.pep
MCRCCQNCWEDFYWNCFEERFCYDESIANYNPEEDEDYLASRKNGQIIGR
IQPTSVDNNNSLTVPQPICDQPQMRQGNSSLGLSLMSAKIHEEDYRRETQ
INVPNLGPEILAVFANSQIFQDHQPTKLNRISTKTYLAGIHSPNREMPTT
PRLSDQDRLLRRLEGNDGPSGAHTPLLGGAANGKSSGKSTRSSSIVSSGV
PKVKFYLNASFLDH
BO06781.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17834-PF | 208 | CG17834-PF | 1..208 | 1..208 | 1117 | 100 | Plus |
CG17834-PD | 208 | CG17834-PD | 1..208 | 1..208 | 1117 | 100 | Plus |
CG17834-PB | 208 | CG17834-PB | 1..208 | 1..208 | 1117 | 100 | Plus |
CG17834-PE | 423 | CG17834-PE | 1..166 | 1..166 | 899 | 99.4 | Plus |
CG17834-PC | 423 | CG17834-PC | 1..166 | 1..166 | 899 | 99.4 | Plus |