Clone Sequence Records
BO06782.3prime Sequence
918 bp (761 high quality bases) assembled on 2005-12-03
> BO06782.3prime
ATGGTCTAGAAAGCTTGCAACGGCTGGCTTCTTCGGCAGCGATCCAAAGG
CGGAAATGACAGTGCCCTTGGTGCCCGTAACCGTGGTGGTTAGAGCCGGA
AGAGTGGTCTTAACAACGGTTGACGAAGGTGCCGGTTGATCCCACTTGGA
TTTGCGCTTTTTGGCCTCCTCCTCGACTTTCCGGGCCAACGCAGTGGCCT
GCTCCACCTTGTCCATGTCCTTGCGATCTTTCTGCCGCTTCACCATCTCC
GTTTTCTGGACCGCCGCCAAGGACTCGTAATAGGACTCCTCGCCCCACTG
CAAAGGATCATAGATCTCGGGCGGATAGTTGGTACCGAACTCGTTGATGT
CGCAAAAGCTTATTAGTTTGTCATATATGCTGGGATTGCGAAATTCCTTG
CGATCCTGTATTACGCGATTCATGTCCATATTGGTCTGGTTCATCTTTGT
GTACATTTTAGTGATTTTGGCCACTAATTCGGCGGACGGCTTCCCCTTTG
GCTCGGGTGGCAGCTGGAACTTGTACTTGGCGTACTTGGCATCCTTTTCG
TAGCTCTCAGCCGTGCGTTCTTCGACCGGGAAACATGCCGGCTCCTCGTC
CACCTCCATGGGCGTGTCCCCGTCCTTGGAACCACTACCAGCATTGCTTT
TATCCTTGGCTTTGGGACTGTCTTCGCTCTGGGAATTGGAACTATTGCTC
TCGTCGCCACTGCTGGACTCCTCTTCACTAGAGGACGCTGCGGCGCGGTC
CTCGTCCTCGTCAGAAATCAGGGTGTCATCCTGGTAGCTCACCAACCGAC
GCACCTTCTTGGCCCGCTTCTTTTTCTTCTCCTTAGATCGCTTGCTTTCT
TCGTCCTGTTTGGTGGGCGTCGGCGTGGGTCGCTTGGGCGGTATGATTAC
CAGGGACGCCGTGGAGTT
BO06782.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2063-PA | 978 | CG2063-RA | 76..975 | 918..19 | 4500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2063-RA | 1195 | CG2063-RA | 203..1102 | 918..19 | 4500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:10:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9285603..9286353 | 155..905 | 3740 | 99.9 | Plus |
2R | 25286936 | 2R | 9285403..9285539 | 19..155 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:10:29 has no hits.
BO06782.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:24 Download gff for
BO06782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-PA | 76..978 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:32 Download gff for
BO06782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-PA | 76..978 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:04 Download gff for
BO06782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 203..1109 | 10..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:36 Download gff for
BO06782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 203..1109 | 10..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:36 Download gff for
BO06782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9285396..9285538 | 10..154 | 97 | <- | Plus |
2R | 9285603..9286348 | 155..900 | 100 | <- | Plus |
2R | 9286415..9286432 | 901..918 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:04 Download gff for
BO06782.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5172901..5173043 | 10..154 | 97 | <- | Plus |
arm_2R | 5173108..5173853 | 155..900 | 100 | <- | Plus |
arm_2R | 5173920..5173937 | 901..918 | 100 | | Plus |
BO06782.5prime Sequence
884 bp (751 high quality bases) assembled on 2005-12-03
> BO06782.5prime
GAAGTTATCAGTCGACATGGCTGCCCTGGCCAGCTTGACTGCCCAGTACA
CGGATTCCGAGAACGAGGGCGATGCTAGTCCGGATTCACAAAACTCCACG
GCGTCCCTGGTAATCATACCGCCCAAGCGACCCACGCCGACGCCCACCAA
ACAGGACGAAGAAAGCAAGCGATCTAAGGAGAAGAAAAAGAAGCGGGCCA
AGAAGGTGCGTCGGTTGGTGAGCTACCAGGATGACACCCTGATTTCTGAC
GAGGACGAGGACCGCGCCGCAGCGTCCTCTAGTGAAGAGGAGTCCAGCAG
TGGCGACGAGAGCAATAGTTCCAATTCCCAGAGCGAAGACAGTCCCAAAG
CCAAGGATAAAAGCAATGCTGGTAGTGGTTCCAAGGACGGGGACACGCCC
ATGGAGGTGGACGAGGAGCCGGCATGTTTCCCGGTCGAAGAACGCACGGC
TGAGAGCTACGAAAAGGATGCCAAGTACGCCAAGTACAAGTTCCAGCTGC
CACCCGAGCCAAAGGGGAAGCCGTCCGCCGAATTAGTGGCCAAAATCACT
AAAATGTACACAAAGATGAACCAGACCAATATGGACATGAATCGCGTAAT
ACAGGATCGCAAGGAATTTCGCAATCCCAGCATATATGACAAACTAATAA
GCTTTTGCGACATCAACGAGTTCGGTACCAACTATCCGCCCGAGATCTAT
GATCCTTTGCAGTGGGGCGAGGAGTCCTATTACGAGTCCTTGGCGGCGGT
CCAGAANACGGAGATGGTGAAGCGGCAGAAAGATCGCAAGGACATGGACN
AGGTGGAGCAGGCCACTGCGTTGGCCCCGGAAGTCGAGGAGGAGGCCAAA
AGCGCAAATCCAAGTGGGATCAACCGGCACCTTC
BO06782.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2063-PA | 978 | CG2063-RA | 1..835 | 17..851 | 4087 | 99.5 | Plus |
CG2063-PA | 978 | CG2063-RA | 833..869 | 848..884 | 185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2063-RA | 1195 | CG2063-RA | 128..996 | 17..884 | 4268 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9285607..9286353 | 851..105 | 3668 | 99.3 | Minus |
2R | 25286936 | 2R | 9286413..9286507 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:08:42 has no hits.
BO06782.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:25 Download gff for
BO06782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-PA | 1..869 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:34 Download gff for
BO06782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-PA | 1..869 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:05 Download gff for
BO06782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 121..996 | 9..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:33:06 Download gff for
BO06782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 121..996 | 9..884 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:33:06 Download gff for
BO06782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9285509..9285538 | 855..884 | 100 | <- | Minus |
2R | 9285603..9286348 | 110..854 | 99 | <- | Minus |
2R | 9286415..9286514 | 9..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:05 Download gff for
BO06782.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5173014..5173043 | 855..884 | 100 | <- | Minus |
arm_2R | 5173108..5173853 | 110..854 | 99 | <- | Minus |
arm_2R | 5173920..5174019 | 9..109 | 96 | | Minus |
BO06782.complete Sequence
1009 bp (1009 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630530
> BO06782.complete
GAAGTTATCAGTCGACATGGCTGCCCTGGCCAGCTTGACTGCCCAGTACA
CGGATTCCGAGAACGAGGGCGATGCTAGTCCGGATTCACAAAACTCCACG
GCGTCCCTGGTAATCATACCGCCCAAGCGACCCACGCCGACGCCCACCAA
ACAGGACGAAGAAAGCAAGCGATCTAAGGAGAAGAAAAAGAAGCGGGCCA
AGAAGGTGCGTCGGTTGGTGAGCTACCAGGATGACACCCTGATTTCTGAC
GAGGACGAGGACCGCGCCGCAGCGTCCTCTAGTGAAGAGGAGTCCAGCAG
TGGCGACGAGAGCAATAGTTCCAATTCCCAGAGCGAAGACAGTCCCAAAG
CCAAGGATAAAAGCAATGCTGGTAGTGGTTCCAAGGACGGGGACACGCCC
ATGGAGGTGGACGAGGAGCCGGCATGTTTCCCGGTCGAAGAACGCACGGC
TGAGAGCTACGAAAAGGATGCCAAGTACGCCAAGTACAAGTTCCAGCTGC
CACCCGAGCCAAAGGGGAAGCCGTCCGCCGAATTAGTGGCCAAAATCACT
AAAATGTACACAAAGATGAACCAGACCAATATGGACATGAATCGCGTAAT
ACAGGATCGCAAGGAATTTCGCAATCCCAGCATATATGACAAACTAATAA
GCTTTTGCGACATCAACGAGTTCGGTACCAACTATCCGCCCGAGATCTAT
GATCCTTTGCAGTGGGGCGAGGAGTCCTATTACGAGTCCTTGGCGGCGGT
CCAGAAAACGGAGATGGTGAAGCGGCAGAAAGATCGCAAGGACATGGACA
AGGTGGAGCAGGCCACTGCGTTGGCCCGGAAAGTCGAGGAGGAGGCCAAA
AAGCGCAAATCCAAGTGGGATCAACCGGCACCTTCGTCAACCGTTGTTAA
GACCACTCTTCCGGCTCTAACCACCACGGTTACGGGCACCAAGGGCACTG
TCATTTCCGCCTTTGGATCGCTGCCGAAGAAGCCAGCCGTTGCAAGCTTT
CTAGACCAT
BO06782.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2063-RA | 978 | CG2063-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2063-RA | 1195 | CG2063-RA | 128..1102 | 17..991 | 4875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9285603..9286353 | 855..105 | 3740 | 99.9 | Minus |
2R | 25286936 | 2R | 9285403..9285539 | 991..855 | 685 | 100 | Minus |
2R | 25286936 | 2R | 9286413..9286507 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:58:15 has no hits.
BO06782.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:22 Download gff for
BO06782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 1..978 | 17..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:39 Download gff for
BO06782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 116..1104 | 9..1000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:49 Download gff for
BO06782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 128..1102 | 17..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:22 Download gff for
BO06782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 116..1104 | 9..1000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:26 Download gff for
BO06782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2063-RA | 128..1102 | 17..993 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:26 Download gff for
BO06782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9285401..9285538 | 856..993 | 98 | <- | Minus |
2R | 9285603..9286348 | 110..855 | 100 | <- | Minus |
2R | 9286415..9286507 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:49 Download gff for
BO06782.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5172906..5173043 | 856..993 | 98 | <- | Minus |
arm_2R | 5173108..5173853 | 110..855 | 100 | <- | Minus |
arm_2R | 5173920..5174012 | 17..109 | 100 | | Minus |
BO06782.pep Sequence
Translation from 16 to 1009
> BO06782.pep
MAALASLTAQYTDSENEGDASPDSQNSTASLVIIPPKRPTPTPTKQDEES
KRSKEKKKKRAKKVRRLVSYQDDTLISDEDEDRAAASSSEEESSSGDESN
SSNSQSEDSPKAKDKSNAGSGSKDGDTPMEVDEEPACFPVEERTAESYEK
DAKYAKYKFQLPPEPKGKPSAELVAKITKMYTKMNQTNMDMNRVIQDRKE
FRNPSIYDKLISFCDINEFGTNYPPEIYDPLQWGEESYYESLAAVQKTEM
VKRQKDRKDMDKVEQATALARKVEEEAKKRKSKWDQPAPSSTVVKTTLPA
LTTTVTGTKGTVISAFGSLPKKPAVASFLDH
BO06782.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2063-PA | 325 | CG2063-PA | 1..325 | 1..325 | 1662 | 100 | Plus |