Clone Sequence Records
BO06788.3prime Sequence
716 bp (715 high quality bases) assembled on 2005-12-03
> BO06788.3prime
ATGGTCTAGAAAGCTTGCATCATCCTTGTTTCCGCCTCCGCCGATGGTTA
TCTTCTTCTGCAGCTTGCTGTACTCCTCGGTGAGTCGGTCGTACTCGCGG
TTGATGCTCTCCGCCTGCGACTTAACCGCCTCCTTGTCCTTCTTTTCGCG
ATTCAAGTCGGAGGTTAGCTCCTGGACGCGCTCGCGCAGCTTGTTGAGCT
CGATGAGAGTGGTATCCTCGCCGGCTTCCTTGGCCTTCTCGGTGTTCTTG
TTCTCCAGCAAGGAACGTGCGGCTGCAGTGGCGCTCTGTGCCTGCTTGAA
GGAAGCCTCGCTCTGGGCCATGAGATTGGCCTGGGTGCAGATCAAGTTTA
CCAGTCGCCGGATGACCAGGGCAAGGAAAATGGCGAATCCAGAGATGTAG
AAGTTCCGCTGGGCACGGAACAGCTTCATGCTGTGCTGCATCTCCACGTT
CAAGTGGACCTCGTTAGACTGCTGCAAGCCGGAGTACTTGCGCATCTCGC
GAATGGCCTCCAGGAGGAAAATGACCAGAATTCCCATGATCAGCAGGAAA
TATATGTGCGCCTGTTGTCCCAACATCGATAGGAATTTGGACTTGAAGAA
CCGGTTCCAGCGGTAAGGAGTGAGCACCGGCAGCACCAGCAGAAGGACCA
GTGCGATTTCCGCATAGAGAAATCCGGCGATCAAAGTCCACACCAAACTC
ATGTCGACTGATAACT
BO06788.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13887-PC | 687 | CG13887-RC | 1..684 | 702..19 | 3420 | 100 | Minus |
CG13887-PB | 687 | CG13887-RB | 1..684 | 702..19 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13887-RE | 1446 | CG13887-RE | 261..944 | 702..19 | 3420 | 100 | Minus |
CG13887-RB | 1262 | CG13887-RB | 261..944 | 702..19 | 3420 | 100 | Minus |
CG13887-RC | 1159 | CG13887-RC | 158..841 | 702..19 | 3420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 838121..838624 | 702..199 | 2520 | 100 | Minus |
3L | 28110227 | 3L | 839248..839429 | 200..19 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:22:31 has no hits.
BO06788.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:34 Download gff for
BO06788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-PB | 1..687 | 15..702 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:45 Download gff for
BO06788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-PB | 1..687 | 15..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:00:58 Download gff for
BO06788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RC | 150..851 | 8..710 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:34:30 Download gff for
BO06788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RC | 150..851 | 8..710 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:34:30 Download gff for
BO06788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 839250..839439 | 8..198 | 97 | | Minus |
3L | 838113..838624 | 199..710 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:00:58 Download gff for
BO06788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 838113..838624 | 199..710 | 99 | -> | Minus |
arm_3L | 839250..839439 | 8..198 | 97 | | Minus |
BO06788.5prime Sequence
716 bp (715 high quality bases) assembled on 2005-12-03
> BO06788.5prime
GAAGTTATCAGTCGACATGAGTTTGGTGTGGACTTTGATCGCCGGATTTC
TCTATGCGGAAATCGCACTGGTCCTTCTGCTGGTGCTGCCGGTGCTCACT
CCTTACCGCTGGAACCGGTTCTTCAAGTCCAAATTCCTATCGATGTTGGG
ACAACAGGCGCACATATATTTCCTGCTGATCATGGGAATTCTGGTCATTT
TCCTCCTGGAGGCCATTCGCGAGATGCGCAAGTACTCCGGCTTGCAGCAG
TCTAACGAGGTCCACTTGAACGTGGAGATGCAGCACAGCATGAAGCTGTT
CCGTGCCCAGCGGAACTTCTACATCTCTGGATTCGCCATTTTCCTTGCCC
TGGTCATCCGGCGACTGGTAAACTTGATCTGCACCCAGGCCAATCTCATG
GCCCAGAGCGAGGCTTCCTTCAAGCAGGCACAGAGCGCCACTGCAGCCGC
ACGTTCCTTGCTGGAGAACAAGAACACCGAGAAGGCCAAGGAAGCCGGCG
AGGATACCACTCTCATCGAGCTCAACAAGCTGCGCGAGCGCGTCCAGGAG
CTAACCTCCGACTTGAATCGCGAAAAGAAGGACAAGGAGGCGGTTAAGTC
GCAGGCGGAGAGCATCAACCGCGAGTACGACCGACTCACCGAGGAGTACA
GCAAGCTGCAGAAGAAGATAACCATCGGCGGAGGCGGAAACAAGGATGAT
GCAAGCTTTCTAGACC
BO06788.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13887-PC | 687 | CG13887-RC | 1..684 | 17..700 | 3420 | 100 | Plus |
CG13887-PB | 687 | CG13887-RB | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13887-RE | 1446 | CG13887-RE | 261..944 | 17..700 | 3420 | 100 | Plus |
CG13887-RB | 1262 | CG13887-RB | 261..944 | 17..700 | 3420 | 100 | Plus |
CG13887-RC | 1159 | CG13887-RC | 158..841 | 17..700 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 838121..838624 | 17..520 | 2520 | 100 | Plus |
3L | 28110227 | 3L | 839248..839429 | 519..700 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:08:53 has no hits.
BO06788.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:35 Download gff for
BO06788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-PB | 1..687 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:46 Download gff for
BO06788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-PB | 1..687 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:07 Download gff for
BO06788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RC | 150..851 | 9..711 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:33:43 Download gff for
BO06788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RC | 150..851 | 9..711 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:33:43 Download gff for
BO06788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 838113..838624 | 9..520 | 99 | -> | Plus |
3L | 839250..839439 | 521..711 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:07 Download gff for
BO06788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 838113..838624 | 9..520 | 99 | -> | Plus |
arm_3L | 839250..839439 | 521..711 | 97 | | Plus |
BO06788.complete Sequence
718 bp (718 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630532
> BO06788.complete
GAAGTTATCAGTCGACATGAGTTTGGTGTGGACTTTGATCGCCGGATTTC
TCTATGCGGAAATCGCACTGGTCCTTCTGCTGGTGCTGCCGGTGCTCACT
CCTTACCGCTGGAACCGGTTCTTCAAGTCCAAATTCCTATCGATGTTGGG
ACAACAGGCGCACATATATTTCCTGCTGATCATGGGAATTCTGGTCATTT
TCCTCCTGGAGGCCATTCGCGAGATGCGCAAGTACTCCGGCTTGCAGCAG
TCTAACGAGGTCCACTTGAACGTGGAGATGCAGCACAGCATGAAGCTGTT
CCGTGCCCAGCGGAACTTCTACATCTCTGGATTCGCCATTTTCCTTGCCC
TGGTCATCCGGCGACTGGTAAACTTGATCTGCACCCAGGCCAATCTCATG
GCCCAGAGCGAGGCTTCCTTCAAGCAGGCACAGAGCGCCACTGCAGCCGC
ACGTTCCTTGCTGGAGAACAAGAACACCGAGAAGGCCAAGGAAGCCGGCG
AGGATACCACTCTCATCGAGCTCAACAAGCTGCGCGAGCGCGTCCAGGAG
CTAACCTCCGACTTGAATCGCGAAAAGAAGGACAAGGAGGCGGTTAAGTC
GCAGGCGGAGAGCATCAACCGCGAGTACGACCGACTCACCGAGGAGTACA
GCAAGCTGCAGAAGAAGATAACCATCGGCGGAGGCGGAAACAAGGATGAT
GCAAGCTTTCTAGACCAT
BO06788.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13887-RE | 687 | CG13887-PE | 1..684 | 17..700 | 3420 | 100 | Plus |
CG13887-RB | 687 | CG13887-PB | 1..684 | 17..700 | 3420 | 100 | Plus |
CG13887-RC | 687 | CG13887-PC | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13887-RE | 1446 | CG13887-RE | 261..944 | 17..700 | 3420 | 100 | Plus |
CG13887-RB | 1262 | CG13887-RB | 261..944 | 17..700 | 3420 | 100 | Plus |
CG13887-RC | 1159 | CG13887-RC | 158..841 | 17..700 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 838121..838624 | 17..520 | 2520 | 100 | Plus |
3L | 28110227 | 3L | 839248..839429 | 519..700 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:21:58 has no hits.
BO06788.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:03 Download gff for
BO06788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RB | 1..687 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:16 Download gff for
BO06788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RB | 257..958 | 9..711 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:36 Download gff for
BO06788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RC | 158..841 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:03 Download gff for
BO06788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RB | 257..958 | 9..711 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:50 Download gff for
BO06788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13887-RC | 158..841 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:50 Download gff for
BO06788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 838121..838624 | 17..520 | 100 | -> | Plus |
3L | 839250..839429 | 521..702 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:36 Download gff for
BO06788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 838121..838624 | 17..520 | 100 | -> | Plus |
arm_3L | 839250..839429 | 521..702 | 98 | | Plus |
BO06788.pep Sequence
Translation from 16 to 718
> BO06788.pep
MSLVWTLIAGFLYAEIALVLLLVLPVLTPYRWNRFFKSKFLSMLGQQAHI
YFLLIMGILVIFLLEAIREMRKYSGLQQSNEVHLNVEMQHSMKLFRAQRN
FYISGFAIFLALVIRRLVNLICTQANLMAQSEASFKQAQSATAAARSLLE
NKNTEKAKEAGEDTTLIELNKLRERVQELTSDLNREKKDKEAVKSQAESI
NREYDRLTEEYSKLQKKITIGGGGNKDDASFLDH
BO06788.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13887-PE | 228 | CG13887-PE | 1..228 | 1..228 | 1128 | 100 | Plus |
CG13887-PB | 228 | CG13887-PB | 1..228 | 1..228 | 1128 | 100 | Plus |
CG13887-PC | 228 | CG13887-PC | 1..228 | 1..228 | 1128 | 100 | Plus |
CG13887-PD | 184 | CG13887-PD | 1..181 | 1..181 | 866 | 97.2 | Plus |