Clone BO06788 Report

Search the DGRC for BO06788

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG13887-RB
Protein status:BO06788.pep: validated full length
Sequenced Size:718

Clone Sequence Records

BO06788.3prime Sequence

716 bp (715 high quality bases) assembled on 2005-12-03

> BO06788.3prime
ATGGTCTAGAAAGCTTGCATCATCCTTGTTTCCGCCTCCGCCGATGGTTA
TCTTCTTCTGCAGCTTGCTGTACTCCTCGGTGAGTCGGTCGTACTCGCGG
TTGATGCTCTCCGCCTGCGACTTAACCGCCTCCTTGTCCTTCTTTTCGCG
ATTCAAGTCGGAGGTTAGCTCCTGGACGCGCTCGCGCAGCTTGTTGAGCT
CGATGAGAGTGGTATCCTCGCCGGCTTCCTTGGCCTTCTCGGTGTTCTTG
TTCTCCAGCAAGGAACGTGCGGCTGCAGTGGCGCTCTGTGCCTGCTTGAA
GGAAGCCTCGCTCTGGGCCATGAGATTGGCCTGGGTGCAGATCAAGTTTA
CCAGTCGCCGGATGACCAGGGCAAGGAAAATGGCGAATCCAGAGATGTAG
AAGTTCCGCTGGGCACGGAACAGCTTCATGCTGTGCTGCATCTCCACGTT
CAAGTGGACCTCGTTAGACTGCTGCAAGCCGGAGTACTTGCGCATCTCGC
GAATGGCCTCCAGGAGGAAAATGACCAGAATTCCCATGATCAGCAGGAAA
TATATGTGCGCCTGTTGTCCCAACATCGATAGGAATTTGGACTTGAAGAA
CCGGTTCCAGCGGTAAGGAGTGAGCACCGGCAGCACCAGCAGAAGGACCA
GTGCGATTTCCGCATAGAGAAATCCGGCGATCAAAGTCCACACCAAACTC
ATGTCGACTGATAACT

BO06788.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-PC 687 CG13887-RC 1..684 702..19 3420 100 Minus
CG13887-PB 687 CG13887-RB 1..684 702..19 3420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-RE 1446 CG13887-RE 261..944 702..19 3420 100 Minus
CG13887-RB 1262 CG13887-RB 261..944 702..19 3420 100 Minus
CG13887-RC 1159 CG13887-RC 158..841 702..19 3420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 838121..838624 702..199 2520 100 Minus
3L 28110227 3L 839248..839429 200..19 910 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:22:31 has no hits.

BO06788.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:34 Download gff for BO06788.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-PB 1..687 15..702 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:45 Download gff for BO06788.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-PB 1..687 15..702 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:00:58 Download gff for BO06788.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 150..851 8..710 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:34:30 Download gff for BO06788.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 150..851 8..710 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:34:30 Download gff for BO06788.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 839250..839439 8..198 97   Minus
3L 838113..838624 199..710 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:00:58 Download gff for BO06788.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 838113..838624 199..710 99 -> Minus
arm_3L 839250..839439 8..198 97   Minus

BO06788.5prime Sequence

716 bp (715 high quality bases) assembled on 2005-12-03

> BO06788.5prime
GAAGTTATCAGTCGACATGAGTTTGGTGTGGACTTTGATCGCCGGATTTC
TCTATGCGGAAATCGCACTGGTCCTTCTGCTGGTGCTGCCGGTGCTCACT
CCTTACCGCTGGAACCGGTTCTTCAAGTCCAAATTCCTATCGATGTTGGG
ACAACAGGCGCACATATATTTCCTGCTGATCATGGGAATTCTGGTCATTT
TCCTCCTGGAGGCCATTCGCGAGATGCGCAAGTACTCCGGCTTGCAGCAG
TCTAACGAGGTCCACTTGAACGTGGAGATGCAGCACAGCATGAAGCTGTT
CCGTGCCCAGCGGAACTTCTACATCTCTGGATTCGCCATTTTCCTTGCCC
TGGTCATCCGGCGACTGGTAAACTTGATCTGCACCCAGGCCAATCTCATG
GCCCAGAGCGAGGCTTCCTTCAAGCAGGCACAGAGCGCCACTGCAGCCGC
ACGTTCCTTGCTGGAGAACAAGAACACCGAGAAGGCCAAGGAAGCCGGCG
AGGATACCACTCTCATCGAGCTCAACAAGCTGCGCGAGCGCGTCCAGGAG
CTAACCTCCGACTTGAATCGCGAAAAGAAGGACAAGGAGGCGGTTAAGTC
GCAGGCGGAGAGCATCAACCGCGAGTACGACCGACTCACCGAGGAGTACA
GCAAGCTGCAGAAGAAGATAACCATCGGCGGAGGCGGAAACAAGGATGAT
GCAAGCTTTCTAGACC

BO06788.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-PC 687 CG13887-RC 1..684 17..700 3420 100 Plus
CG13887-PB 687 CG13887-RB 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-RE 1446 CG13887-RE 261..944 17..700 3420 100 Plus
CG13887-RB 1262 CG13887-RB 261..944 17..700 3420 100 Plus
CG13887-RC 1159 CG13887-RC 158..841 17..700 3420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 838121..838624 17..520 2520 100 Plus
3L 28110227 3L 839248..839429 519..700 910 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:08:53 has no hits.

BO06788.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:35 Download gff for BO06788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-PB 1..687 17..704 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:46 Download gff for BO06788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-PB 1..687 17..704 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:07 Download gff for BO06788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 150..851 9..711 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:33:43 Download gff for BO06788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 150..851 9..711 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:33:43 Download gff for BO06788.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 838113..838624 9..520 99 -> Plus
3L 839250..839439 521..711 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:07 Download gff for BO06788.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 838113..838624 9..520 99 -> Plus
arm_3L 839250..839439 521..711 97   Plus

BO06788.complete Sequence

718 bp (718 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630532

> BO06788.complete
GAAGTTATCAGTCGACATGAGTTTGGTGTGGACTTTGATCGCCGGATTTC
TCTATGCGGAAATCGCACTGGTCCTTCTGCTGGTGCTGCCGGTGCTCACT
CCTTACCGCTGGAACCGGTTCTTCAAGTCCAAATTCCTATCGATGTTGGG
ACAACAGGCGCACATATATTTCCTGCTGATCATGGGAATTCTGGTCATTT
TCCTCCTGGAGGCCATTCGCGAGATGCGCAAGTACTCCGGCTTGCAGCAG
TCTAACGAGGTCCACTTGAACGTGGAGATGCAGCACAGCATGAAGCTGTT
CCGTGCCCAGCGGAACTTCTACATCTCTGGATTCGCCATTTTCCTTGCCC
TGGTCATCCGGCGACTGGTAAACTTGATCTGCACCCAGGCCAATCTCATG
GCCCAGAGCGAGGCTTCCTTCAAGCAGGCACAGAGCGCCACTGCAGCCGC
ACGTTCCTTGCTGGAGAACAAGAACACCGAGAAGGCCAAGGAAGCCGGCG
AGGATACCACTCTCATCGAGCTCAACAAGCTGCGCGAGCGCGTCCAGGAG
CTAACCTCCGACTTGAATCGCGAAAAGAAGGACAAGGAGGCGGTTAAGTC
GCAGGCGGAGAGCATCAACCGCGAGTACGACCGACTCACCGAGGAGTACA
GCAAGCTGCAGAAGAAGATAACCATCGGCGGAGGCGGAAACAAGGATGAT
GCAAGCTTTCTAGACCAT

BO06788.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-RE 687 CG13887-PE 1..684 17..700 3420 100 Plus
CG13887-RB 687 CG13887-PB 1..684 17..700 3420 100 Plus
CG13887-RC 687 CG13887-PC 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-RE 1446 CG13887-RE 261..944 17..700 3420 100 Plus
CG13887-RB 1262 CG13887-RB 261..944 17..700 3420 100 Plus
CG13887-RC 1159 CG13887-RC 158..841 17..700 3420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 838121..838624 17..520 2520 100 Plus
3L 28110227 3L 839248..839429 519..700 910 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:21:58 has no hits.

BO06788.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:03 Download gff for BO06788.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 1..687 17..704 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:16 Download gff for BO06788.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 257..958 9..711 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:36 Download gff for BO06788.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 158..841 17..702 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:03 Download gff for BO06788.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RB 257..958 9..711 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:50 Download gff for BO06788.complete
Subject Subject Range Query Range Percent Splice Strand
CG13887-RC 158..841 17..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:50 Download gff for BO06788.complete
Subject Subject Range Query Range Percent Splice Strand
3L 838121..838624 17..520 100 -> Plus
3L 839250..839429 521..702 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:36 Download gff for BO06788.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 838121..838624 17..520 100 -> Plus
arm_3L 839250..839429 521..702 98   Plus

BO06788.pep Sequence

Translation from 16 to 718

> BO06788.pep
MSLVWTLIAGFLYAEIALVLLLVLPVLTPYRWNRFFKSKFLSMLGQQAHI
YFLLIMGILVIFLLEAIREMRKYSGLQQSNEVHLNVEMQHSMKLFRAQRN
FYISGFAIFLALVIRRLVNLICTQANLMAQSEASFKQAQSATAAARSLLE
NKNTEKAKEAGEDTTLIELNKLRERVQELTSDLNREKKDKEAVKSQAESI
NREYDRLTEEYSKLQKKITIGGGGNKDDASFLDH

BO06788.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13887-PE 228 CG13887-PE 1..228 1..228 1128 100 Plus
CG13887-PB 228 CG13887-PB 1..228 1..228 1128 100 Plus
CG13887-PC 228 CG13887-PC 1..228 1..228 1128 100 Plus
CG13887-PD 184 CG13887-PD 1..181 1..181 866 97.2 Plus