Clone Sequence Records
BO06789.3prime Sequence
797 bp (796 high quality bases) assembled on 2005-12-03
> BO06789.3prime
ATGGTCTAGAAAGCTTGCTGCTTTGAGACTGTCGTGAATCCAATCGATGT
AGGACGCCACCCTGGTGTAGACATCCGGCCAGTCGGGATTGGGGCAGGGA
ACGGGTCCGAACGACACCAGTCCACCGAGCAGATAGCCATCGTTCTTGAA
CAGCATCAGTGGTCCACCAGCGTTGCCGTAGCACTCCTGGGAATTGGTCA
GGCCACAGAGCTTCGAGGCTTGGATGCGCAACTGCTGGCTGGCGTACTTC
CTTTGACACTCCTCAATCGAACTAATGGTCACATAACCTTTTCGCATCCT
TTGCGAGGAACTAGCCTGCCATCCGGCCACCTCGGTGACCAGGTCCTCCA
GCTCGTCCGCTCGCAGCTGCTTGTTGGGCAGGCAAATGGGTTGCACAAAG
TCGTTGAGCTTGGCAGGACTTGCCAGTCGGACGAGGGCAATGTCGTTGAT
CTGCGTCCTGTCGGTGCGATTGTAGAGCGGATGTGGAAGCAACTCCTCGA
TGGCTATGTCCTGGTAGGGAGGCGCGCAATCCGCCACTTTACTATCCTCA
TGGTACTGACAGTCGGGATTCGTGCTAGTGTCCCATTCACCCAACCGGAC
AGCAGTAATCTGCAGATTGCTAGTCGCCGCCTGGGCCACACAATGGGCAG
CAGTTAGCACATACCGATCACTGATAAGCACACCGCCACACGCATGGATC
TTCTCCTGGTTGCCGCGCGTATACTCAATGAGGGCCAGCCAGGGAAACTC
CCGGATTCGCGTATCTGTGTCATTCGAACGCTGCCAACGAACCTTTC
BO06789.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3505-PA | 1083 | CG3505-RA | 302..1080 | 797..19 | 3895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3505-RA | 1185 | CG3505-RA | 353..1131 | 797..19 | 3895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14658479..14659174 | 714..19 | 3480 | 100 | Minus |
3R | 32079331 | 3R | 14658324..14658408 | 797..713 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:44:10 has no hits.
BO06789.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:36 Download gff for
BO06789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-PA | 302..1083 | 18..797 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:48 Download gff for
BO06789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-PA | 302..1083 | 18..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:43 Download gff for
BO06789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 343..1127 | 11..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:07 Download gff for
BO06789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 353..1137 | 11..797 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:07 Download gff for
BO06789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14658324..14658407 | 714..797 | 100 | -> | Minus |
3R | 14658480..14659180 | 11..713 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:43 Download gff for
BO06789.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10484046..10484129 | 714..797 | 100 | -> | Minus |
arm_3R | 10484202..10484902 | 11..713 | 99 | | Minus |
BO06789.5prime Sequence
890 bp (809 high quality bases) assembled on 2005-12-03
> BO06789.5prime
GAAGTTATCAGTCGACATGGGAAGTTTTCCAGCTCTACTTGTTGTTGTCG
GCTCGCTGGCATTGGGCGCGAATGCTCAACTCCCGCCCATCAATTGTGTT
GCAAAAATTCCGAGTGGCCGTGTCACCGGTCACTGCATTTCGATCCGGGA
GTGTGACTACTTCATGAGAATCCTGCTATCCGGCAATCTCAGCCAGAGCG
ATCGCAACCTGCTCCGTGATAATCAGTGCGGAGTGCGGGGCAACGACGTC
CAGGTATGCTGTCCTAGTACCGCCGGCTTGGGTGCCCTGACCCACCCACT
TTTGCCCTCGGATTGCGGAAAGGTTCGTTGGCAGCGTTCGAATGACACAG
ATACGCGAATCCGGGAGTTTCCCTGGCTGGCCCTCATTGAGTATACGCGC
GGCAACCAGGAGAAGATCCATGCGTGTGGCGGTGTGCTTATCAGTGATCG
GTATGTGCTAACTGCTGCCCATTGTGTGGCCCAGGCGGCGACTAGCAATC
TGCAGATTACTGCTGTCCGGTTGGGTGAATGGGACACTAGCACGAATCCC
GACTGTCAGTACCATGAGGATAGTAAAGTGGCGGATTGCGCGCCTCCCTA
CCAGGACATAGCCATCGAGGAGTTGCTTCCACATCCGCTCTACAATCGCA
CCGACAGGACGCAGATCAACGACATTGCCCTCGTCCGACTGGCAAGTCCT
GCCAAGCTCAACGACTTTGTGCAACCCATTTGCCTGCCCAACAAGCAGCT
GCGAGCGGACGAGCTGGAGGACCTGGTCACCGAGGTGGCCGGATGGCAGG
CTAGTTCCTCGCAAAGGATGCGAAAAGGTTATGTGACCATTAGTTCGATT
GAGGAGTGTCAAAGGAAGTACGCCAGCCAGCAGTTGCGCA
BO06789.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3505-PA | 1083 | CG3505-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3505-RA | 1185 | CG3505-RA | 51..925 | 16..890 | 4375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14658479..14658968 | 401..890 | 2450 | 100 | Plus |
3R | 32079331 | 3R | 14657643..14657824 | 74..255 | 910 | 100 | Plus |
3R | 32079331 | 3R | 14658258..14658408 | 252..402 | 755 | 100 | Plus |
3R | 32079331 | 3R | 14657497..14657555 | 16..74 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:04:03 has no hits.
BO06789.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:37 Download gff for
BO06789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:49 Download gff for
BO06789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:45 Download gff for
BO06789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 38..914 | 13..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:53 Download gff for
BO06789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 48..924 | 13..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:53 Download gff for
BO06789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14657494..14657555 | 13..74 | 98 | -> | Plus |
3R | 14657644..14657822 | 75..253 | 100 | -> | Plus |
3R | 14658260..14658407 | 254..401 | 100 | -> | Plus |
3R | 14658480..14658967 | 402..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:45 Download gff for
BO06789.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10483366..10483544 | 75..253 | 100 | -> | Plus |
arm_3R | 10483982..10484129 | 254..401 | 100 | -> | Plus |
arm_3R | 10483216..10483277 | 13..74 | 98 | -> | Plus |
arm_3R | 10484202..10484689 | 402..889 | 100 | | Plus |
BO06789.complete Sequence
1114 bp (1114 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630533
> BO06789.complete
GAAGTTATCAGTCGACATGGGAAGTTTTCCAGCTCTACTTGTTGTTGTCG
GCTCGCTGGCATTGGGCGCGAATGCTCAACTCCCGCCCATCAATTGTGTT
GCAAAAATTCCGAGTGGCCGTGTCACCGGTCACTGCATTTCGATCCGGGA
GTGTGACTACTTCATGAGAATCCTGCTATCCGGCAATCTCAGCCAGAGCG
ATCGCAACCTGCTCCGTGATAATCAGTGCGGAGTGCGGGGCAACGACGTC
CAGGTATGCTGTCCTAGTACCGCCGGCTTGGGTGCCCTGACCCACCCACT
TTTGCCCTCGGATTGCGGAAAGGTTCGTTGGCAGCGTTCGAATGACACAG
ATACGCGAATCCGGGAGTTTCCCTGGCTGGCCCTCATTGAGTATACGCGC
GGCAACCAGGAGAAGATCCATGCGTGTGGCGGTGTGCTTATCAGTGATCG
GTATGTGCTAACTGCTGCCCATTGTGTGGCCCAGGCGGCGACTAGCAATC
TGCAGATTACTGCTGTCCGGTTGGGTGAATGGGACACTAGCACGAATCCC
GACTGTCAGTACCATGAGGATAGTAAAGTGGCGGATTGCGCGCCTCCCTA
CCAGGACATAGCCATCGAGGAGTTGCTTCCACATCCGCTCTACAATCGCA
CCGACAGGACGCAGATCAACGACATTGCCCTCGTCCGACTGGCAAGTCCT
GCCAAGCTCAACGACTTTGTGCAACCCATTTGCCTGCCCAACAAGCAGCT
GCGAGCGGACGAGCTGGAGGACCTGGTCACCGAGGTGGCCGGATGGCAGG
CTAGTTCCTCGCAAAGGATGCGAAAAGGTTATGTGACCATTAGTTCGATT
GAGGAGTGTCAAAGGAAGTACGCCAGCCAGCAGTTGCGCATCCAAGCCTC
GAAGCTCTGTGGCCTGACCAATTCCCAGGAGTGCTACGGCAACGCTGGTG
GACCACTGATGCTGTTCAAGAACGATGGCTATCTGCTCGGTGGACTGGTG
TCGTTCGGACCCGTTCCCTGCCCCAATCCCGACTGGCCGGATGTCTACAC
CAGGGTGGCGTCCTACATCGATTGGATTCACGACAGTCTCAAAGCAGCAA
GCTTTCTAGACCAT
BO06789.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3505-RA | 1083 | CG3505-PA | 1..1080 | 17..1096 | 5400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3505-RA | 1185 | CG3505-RA | 51..1131 | 16..1096 | 5405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14658479..14659174 | 401..1096 | 3480 | 100 | Plus |
3R | 32079331 | 3R | 14657643..14657824 | 74..255 | 910 | 100 | Plus |
3R | 32079331 | 3R | 14658258..14658408 | 252..402 | 755 | 100 | Plus |
3R | 32079331 | 3R | 14657497..14657555 | 16..74 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:29:29 has no hits.
BO06789.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:04 Download gff for
BO06789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 1..1083 | 17..1097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:17 Download gff for
BO06789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 24..1113 | 13..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:58 Download gff for
BO06789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 42..1121 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:04 Download gff for
BO06789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 24..1113 | 13..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:08 Download gff for
BO06789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3505-RA | 52..1131 | 17..1098 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:08 Download gff for
BO06789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14657644..14657822 | 75..253 | 100 | -> | Plus |
3R | 14658260..14658407 | 254..401 | 100 | -> | Plus |
3R | 14657498..14657555 | 17..74 | 100 | -> | Plus |
3R | 14658480..14659174 | 402..1098 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:58 Download gff for
BO06789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10483366..10483544 | 75..253 | 100 | -> | Plus |
arm_3R | 10483982..10484129 | 254..401 | 100 | -> | Plus |
arm_3R | 10483220..10483277 | 17..74 | 100 | -> | Plus |
arm_3R | 10484202..10484896 | 402..1098 | 99 | | Plus |
BO06789.pep Sequence
Translation from 16 to 1114
> BO06789.pep
MGSFPALLVVVGSLALGANAQLPPINCVAKIPSGRVTGHCISIRECDYFM
RILLSGNLSQSDRNLLRDNQCGVRGNDVQVCCPSTAGLGALTHPLLPSDC
GKVRWQRSNDTDTRIREFPWLALIEYTRGNQEKIHACGGVLISDRYVLTA
AHCVAQAATSNLQITAVRLGEWDTSTNPDCQYHEDSKVADCAPPYQDIAI
EELLPHPLYNRTDRTQINDIALVRLASPAKLNDFVQPICLPNKQLRADEL
EDLVTEVAGWQASSSQRMRKGYVTISSIEECQRKYASQQLRIQASKLCGL
TNSQECYGNAGGPLMLFKNDGYLLGGLVSFGPVPCPNPDWPDVYTRVASY
IDWIHDSLKAASFLDH
BO06789.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3505-PA | 360 | CG3505-PA | 1..360 | 1..360 | 1924 | 100 | Plus |
ea-PA | 392 | CG4920-PA | 7..392 | 7..360 | 656 | 38 | Plus |
MP1-PA | 390 | CG1102-PA | 36..390 | 37..360 | 632 | 38.3 | Plus |
MP1-PC | 399 | CG1102-PC | 36..399 | 37..360 | 613 | 37.6 | Plus |
ea-PB | 261 | CG4920-PB | 3..261 | 113..360 | 583 | 44.6 | Plus |