Clone BO06789 Report

Search the DGRC for BO06789

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG3505-RA
Protein status:BO06789.pep: validated full length
Sequenced Size:1114

Clone Sequence Records

BO06789.3prime Sequence

797 bp (796 high quality bases) assembled on 2005-12-03

> BO06789.3prime
ATGGTCTAGAAAGCTTGCTGCTTTGAGACTGTCGTGAATCCAATCGATGT
AGGACGCCACCCTGGTGTAGACATCCGGCCAGTCGGGATTGGGGCAGGGA
ACGGGTCCGAACGACACCAGTCCACCGAGCAGATAGCCATCGTTCTTGAA
CAGCATCAGTGGTCCACCAGCGTTGCCGTAGCACTCCTGGGAATTGGTCA
GGCCACAGAGCTTCGAGGCTTGGATGCGCAACTGCTGGCTGGCGTACTTC
CTTTGACACTCCTCAATCGAACTAATGGTCACATAACCTTTTCGCATCCT
TTGCGAGGAACTAGCCTGCCATCCGGCCACCTCGGTGACCAGGTCCTCCA
GCTCGTCCGCTCGCAGCTGCTTGTTGGGCAGGCAAATGGGTTGCACAAAG
TCGTTGAGCTTGGCAGGACTTGCCAGTCGGACGAGGGCAATGTCGTTGAT
CTGCGTCCTGTCGGTGCGATTGTAGAGCGGATGTGGAAGCAACTCCTCGA
TGGCTATGTCCTGGTAGGGAGGCGCGCAATCCGCCACTTTACTATCCTCA
TGGTACTGACAGTCGGGATTCGTGCTAGTGTCCCATTCACCCAACCGGAC
AGCAGTAATCTGCAGATTGCTAGTCGCCGCCTGGGCCACACAATGGGCAG
CAGTTAGCACATACCGATCACTGATAAGCACACCGCCACACGCATGGATC
TTCTCCTGGTTGCCGCGCGTATACTCAATGAGGGCCAGCCAGGGAAACTC
CCGGATTCGCGTATCTGTGTCATTCGAACGCTGCCAACGAACCTTTC

BO06789.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3505-PA 1083 CG3505-RA 302..1080 797..19 3895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3505-RA 1185 CG3505-RA 353..1131 797..19 3895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14658479..14659174 714..19 3480 100 Minus
3R 32079331 3R 14658324..14658408 797..713 425 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:44:10 has no hits.

BO06789.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:36 Download gff for BO06789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-PA 302..1083 18..797 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:48 Download gff for BO06789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-PA 302..1083 18..797 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:43 Download gff for BO06789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 343..1127 11..797 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:07 Download gff for BO06789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 353..1137 11..797 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:07 Download gff for BO06789.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14658324..14658407 714..797 100 -> Minus
3R 14658480..14659180 11..713 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:43 Download gff for BO06789.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10484046..10484129 714..797 100 -> Minus
arm_3R 10484202..10484902 11..713 99   Minus

BO06789.5prime Sequence

890 bp (809 high quality bases) assembled on 2005-12-03

> BO06789.5prime
GAAGTTATCAGTCGACATGGGAAGTTTTCCAGCTCTACTTGTTGTTGTCG
GCTCGCTGGCATTGGGCGCGAATGCTCAACTCCCGCCCATCAATTGTGTT
GCAAAAATTCCGAGTGGCCGTGTCACCGGTCACTGCATTTCGATCCGGGA
GTGTGACTACTTCATGAGAATCCTGCTATCCGGCAATCTCAGCCAGAGCG
ATCGCAACCTGCTCCGTGATAATCAGTGCGGAGTGCGGGGCAACGACGTC
CAGGTATGCTGTCCTAGTACCGCCGGCTTGGGTGCCCTGACCCACCCACT
TTTGCCCTCGGATTGCGGAAAGGTTCGTTGGCAGCGTTCGAATGACACAG
ATACGCGAATCCGGGAGTTTCCCTGGCTGGCCCTCATTGAGTATACGCGC
GGCAACCAGGAGAAGATCCATGCGTGTGGCGGTGTGCTTATCAGTGATCG
GTATGTGCTAACTGCTGCCCATTGTGTGGCCCAGGCGGCGACTAGCAATC
TGCAGATTACTGCTGTCCGGTTGGGTGAATGGGACACTAGCACGAATCCC
GACTGTCAGTACCATGAGGATAGTAAAGTGGCGGATTGCGCGCCTCCCTA
CCAGGACATAGCCATCGAGGAGTTGCTTCCACATCCGCTCTACAATCGCA
CCGACAGGACGCAGATCAACGACATTGCCCTCGTCCGACTGGCAAGTCCT
GCCAAGCTCAACGACTTTGTGCAACCCATTTGCCTGCCCAACAAGCAGCT
GCGAGCGGACGAGCTGGAGGACCTGGTCACCGAGGTGGCCGGATGGCAGG
CTAGTTCCTCGCAAAGGATGCGAAAAGGTTATGTGACCATTAGTTCGATT
GAGGAGTGTCAAAGGAAGTACGCCAGCCAGCAGTTGCGCA

BO06789.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3505-PA 1083 CG3505-RA 1..874 17..890 4370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3505-RA 1185 CG3505-RA 51..925 16..890 4375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14658479..14658968 401..890 2450 100 Plus
3R 32079331 3R 14657643..14657824 74..255 910 100 Plus
3R 32079331 3R 14658258..14658408 252..402 755 100 Plus
3R 32079331 3R 14657497..14657555 16..74 295 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:04:03 has no hits.

BO06789.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:37 Download gff for BO06789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-PA 1..873 17..889 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:49 Download gff for BO06789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-PA 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:45 Download gff for BO06789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 38..914 13..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:53 Download gff for BO06789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 48..924 13..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:53 Download gff for BO06789.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14657494..14657555 13..74 98 -> Plus
3R 14657644..14657822 75..253 100 -> Plus
3R 14658260..14658407 254..401 100 -> Plus
3R 14658480..14658967 402..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:45 Download gff for BO06789.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10483366..10483544 75..253 100 -> Plus
arm_3R 10483982..10484129 254..401 100 -> Plus
arm_3R 10483216..10483277 13..74 98 -> Plus
arm_3R 10484202..10484689 402..889 100   Plus

BO06789.complete Sequence

1114 bp (1114 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630533

> BO06789.complete
GAAGTTATCAGTCGACATGGGAAGTTTTCCAGCTCTACTTGTTGTTGTCG
GCTCGCTGGCATTGGGCGCGAATGCTCAACTCCCGCCCATCAATTGTGTT
GCAAAAATTCCGAGTGGCCGTGTCACCGGTCACTGCATTTCGATCCGGGA
GTGTGACTACTTCATGAGAATCCTGCTATCCGGCAATCTCAGCCAGAGCG
ATCGCAACCTGCTCCGTGATAATCAGTGCGGAGTGCGGGGCAACGACGTC
CAGGTATGCTGTCCTAGTACCGCCGGCTTGGGTGCCCTGACCCACCCACT
TTTGCCCTCGGATTGCGGAAAGGTTCGTTGGCAGCGTTCGAATGACACAG
ATACGCGAATCCGGGAGTTTCCCTGGCTGGCCCTCATTGAGTATACGCGC
GGCAACCAGGAGAAGATCCATGCGTGTGGCGGTGTGCTTATCAGTGATCG
GTATGTGCTAACTGCTGCCCATTGTGTGGCCCAGGCGGCGACTAGCAATC
TGCAGATTACTGCTGTCCGGTTGGGTGAATGGGACACTAGCACGAATCCC
GACTGTCAGTACCATGAGGATAGTAAAGTGGCGGATTGCGCGCCTCCCTA
CCAGGACATAGCCATCGAGGAGTTGCTTCCACATCCGCTCTACAATCGCA
CCGACAGGACGCAGATCAACGACATTGCCCTCGTCCGACTGGCAAGTCCT
GCCAAGCTCAACGACTTTGTGCAACCCATTTGCCTGCCCAACAAGCAGCT
GCGAGCGGACGAGCTGGAGGACCTGGTCACCGAGGTGGCCGGATGGCAGG
CTAGTTCCTCGCAAAGGATGCGAAAAGGTTATGTGACCATTAGTTCGATT
GAGGAGTGTCAAAGGAAGTACGCCAGCCAGCAGTTGCGCATCCAAGCCTC
GAAGCTCTGTGGCCTGACCAATTCCCAGGAGTGCTACGGCAACGCTGGTG
GACCACTGATGCTGTTCAAGAACGATGGCTATCTGCTCGGTGGACTGGTG
TCGTTCGGACCCGTTCCCTGCCCCAATCCCGACTGGCCGGATGTCTACAC
CAGGGTGGCGTCCTACATCGATTGGATTCACGACAGTCTCAAAGCAGCAA
GCTTTCTAGACCAT

BO06789.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3505-RA 1083 CG3505-PA 1..1080 17..1096 5400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3505-RA 1185 CG3505-RA 51..1131 16..1096 5405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14658479..14659174 401..1096 3480 100 Plus
3R 32079331 3R 14657643..14657824 74..255 910 100 Plus
3R 32079331 3R 14658258..14658408 252..402 755 100 Plus
3R 32079331 3R 14657497..14657555 16..74 295 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:29:29 has no hits.

BO06789.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:04 Download gff for BO06789.complete
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 1..1083 17..1097 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:17 Download gff for BO06789.complete
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 24..1113 13..1104 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:58 Download gff for BO06789.complete
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 42..1121 17..1098 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:04 Download gff for BO06789.complete
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 24..1113 13..1104 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:08 Download gff for BO06789.complete
Subject Subject Range Query Range Percent Splice Strand
CG3505-RA 52..1131 17..1098 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:08 Download gff for BO06789.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14657644..14657822 75..253 100 -> Plus
3R 14658260..14658407 254..401 100 -> Plus
3R 14657498..14657555 17..74 100 -> Plus
3R 14658480..14659174 402..1098 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:58 Download gff for BO06789.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10483366..10483544 75..253 100 -> Plus
arm_3R 10483982..10484129 254..401 100 -> Plus
arm_3R 10483220..10483277 17..74 100 -> Plus
arm_3R 10484202..10484896 402..1098 99   Plus

BO06789.pep Sequence

Translation from 16 to 1114

> BO06789.pep
MGSFPALLVVVGSLALGANAQLPPINCVAKIPSGRVTGHCISIRECDYFM
RILLSGNLSQSDRNLLRDNQCGVRGNDVQVCCPSTAGLGALTHPLLPSDC
GKVRWQRSNDTDTRIREFPWLALIEYTRGNQEKIHACGGVLISDRYVLTA
AHCVAQAATSNLQITAVRLGEWDTSTNPDCQYHEDSKVADCAPPYQDIAI
EELLPHPLYNRTDRTQINDIALVRLASPAKLNDFVQPICLPNKQLRADEL
EDLVTEVAGWQASSSQRMRKGYVTISSIEECQRKYASQQLRIQASKLCGL
TNSQECYGNAGGPLMLFKNDGYLLGGLVSFGPVPCPNPDWPDVYTRVASY
IDWIHDSLKAASFLDH

BO06789.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3505-PA 360 CG3505-PA 1..360 1..360 1924 100 Plus
ea-PA 392 CG4920-PA 7..392 7..360 656 38 Plus
MP1-PA 390 CG1102-PA 36..390 37..360 632 38.3 Plus
MP1-PC 399 CG1102-PC 36..399 37..360 613 37.6 Plus
ea-PB 261 CG4920-PB 3..261 113..360 583 44.6 Plus