Clone BO06796 Report

Search the DGRC for BO06796

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:67
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptregucalcin-RA
Protein status:BO06796.pep: validated full length
Sequenced Size:943

Clone Sequence Records

BO06796.3prime Sequence

878 bp (747 high quality bases) assembled on 2005-12-03

> BO06796.3prime
ATGGTCTAGAAAGCTTGCGACCTTCAGGTTGACGCCGGGATAGCCGGTGG
CGTTCAGTCCGGTCACCTTGTAGGTGGTGCCAGCTGGAGCGGGCTGATCG
AACTTGGCGGCAGTGGTCACGTACAGGATGTCCAAGTTGGGGCCACCGAA
GGCGGCGGAGGTAATCTGTTTGGTTGGGAACTTGATCTCAAGCAGAATCT
TGCCAGTGTTGGGATTAACCTTGTAGATGGTGGCGCCATTGAAGGTGGCC
ACATACAGGTTGCCCTCGGTATCGATGGTCAGGCCATCGGGCAGCAGATG
ATCCTTGGGACTGTTCTTGCGCAGATTGAATATAACCTTGGGATTGCTAG
CCACGCCGGTCTCGAAATCATAGTCATACGACTTCACCTCGTAGTCGGTG
GTATCGATGTAGTAGAACTTCTTGGCCTTCTCGTCCCATGCCAGTCCATT
GGAGATGCCCACATCGCCCTTGATCACCGACACCTGGCCACCGGCCTCCC
AGCGGTACAGCTCGCCGTGACGGAACTCGAACTCATCGCCAATGTAGCGC
ATGGTGCCGCCAAAGAAGCGACCACGGGGATCAACCTTGGCGTCGTTCAA
ACGATTCTTCTCCATCAGTGGCTGCACCTCGAACAGTGTGCGCACCACCT
TGGCGCTGGGCGAGACGCCATCCCAGTTGACGATCACCACGCGTCGACCG
CAGCCGACGGCGAACTCCTGCGGACGTCCCTCCACCGGCAGCACGAATCC
GGCCAAGGTTTCGCCCTCGATCTTCGTCTTGTAGACCTTGTTCTGGGCAT
AGTCGTAGCGGAGCAGGCTGCCCGCCTCAAAATCCACGTAGTACAGGCTT
TGCCTGGCCACATCCCAATGGGGACCCT

BO06796.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1803-PA 912 regucalcin-RA 50..909 878..19 4125 99.1 Minus
CG1803-PC 912 regucalcin-RC 50..909 878..19 4125 99.1 Minus
CG1803-PB 912 regucalcin-RB 50..909 878..19 4125 99.1 Minus
CG1803-PD 960 regucalcin-RD 98..957 878..19 4125 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
regucalcin-RD 1083 CG1803-RD 134..993 878..19 4195 99.2 Minus
regucalcin-RB 1458 CG1803-RB 192..1051 878..19 4195 99.2 Minus
regucalcin-RC 1097 CG1803-RC 148..1007 878..19 4195 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12016052..12016721 878..209 3245 99 Minus
X 23542271 X 12016779..12016968 208..19 950 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:23:02 has no hits.

BO06796.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:49 Download gff for BO06796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1803-PB 50..912 18..878 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:05 Download gff for BO06796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1803-PD 98..960 18..878 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:02 Download gff for BO06796.3prime
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RC 148..1007 19..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:34:55 Download gff for BO06796.3prime
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RC 148..1007 19..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:34:55 Download gff for BO06796.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12016052..12016721 209..878 98 -> Minus
X 12016779..12016968 19..208 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:02 Download gff for BO06796.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11910085..11910754 209..878 98 -> Minus
arm_X 11910812..11911001 19..208 100   Minus

BO06796.5prime Sequence

863 bp (762 high quality bases) assembled on 2005-12-03

> BO06796.5prime
GAAGTTATCAGTCGACATGTCGTACAAGGTGGAACCATTGCCCGATTCCT
ACGCCGGCCTGGGCGAGGGTCCCCATTGGGATGTGGCCAGGCAAAGCCTG
TACTACGTGGATTTGGAGGCGGGCAGCCTGCTCCGCTACGACTATGCCCA
GAACAAGGTCTACAAGACGAAGATCGAGGGCGAAACCTTGGCCGGATTCG
TGCTGCCGGTGGAGGGACGTCCGCAGGAGTTCGCCGTCGGCTGCGGTCGA
CGCGTGGTGATCGTCAACTGGGATGGCGTCTCGCCCAGCGCCAAGGTGGT
GCGCACACTGTTCGAGGTGCAGCCACTGATGGAGAAGAATCGTTTGAACG
ACGCCAAGGTTGATCCCCGTGGTCGCTTCTTTGGCGGCACCATGCGCTAC
ATTGGCGATGAGTTCGAGTTCCGTCACGGCGAGCTGTACCGCTGGGAGGC
CGGTGGCCAGGTGTCGGTGATCAAGGGCGATGTGGGCATCTCCAATGGAC
TGGCATGGGACGAGAAGGCCAAGAAGTTCTACTACATCGATACCACCGAC
TACGAGGTGAAGTCGTATGACTATGATTTCGAGACCGGCGTGGCTAGCAA
TCCCAAGGTTATATTCAATCTGCGCAAGAACAGTCCCAAGGATCATCTGC
TGCCCGATGGCCTGACCATCGATACCGAGGGCAACCTGTATGTGGCCACC
TTCAATGGCGCCACCATCTACAAGGTTAATCCCAACACTGGCAAGATTCT
GCTTGAGATCAAGTTCCCAACCAAACAGATTACCTCCGCCGCCTTCGGTG
GCCCCCACTTGGACATCCTGTACGTGACCACTGCCGCCAAGTTCGATCAG
CCCGCTCCAGCTG

BO06796.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1803-PA 912 regucalcin-RA 1..847 17..863 4060 99.1 Plus
CG1803-PC 912 regucalcin-RC 1..847 17..863 4060 99.1 Plus
CG1803-PB 912 regucalcin-RB 1..847 17..863 4060 99.1 Plus
CG1803-PD 960 regucalcin-RD 49..895 17..863 4060 99.1 Plus
CG7390-PA 912 smp-30-RA 25..68 41..84 145 93.1 Plus
CG7390-PB 912 smp-30-RB 25..68 41..84 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
regucalcin-RD 1083 CG1803-RD 85..931 17..863 4130 99.2 Plus
regucalcin-RB 1458 CG1803-RB 143..989 17..863 4130 99.2 Plus
regucalcin-RC 1097 CG1803-RC 99..945 17..863 4130 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12016003..12016721 17..735 3505 99.2 Plus
X 23542271 X 12016779..12016906 736..863 625 99.2 Plus
3R 32079331 3R 14746410..14747125 732..17 445 70.8 Minus
Blast to na_te.dros performed on 2015-02-13 12:23:21 has no hits.

BO06796.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:50 Download gff for BO06796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1803-PC 1..847 17..863 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:06 Download gff for BO06796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1803-PD 49..895 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:05 Download gff for BO06796.5prime
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RC 99..945 17..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:35:06 Download gff for BO06796.5prime
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RC 99..945 17..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:35:06 Download gff for BO06796.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12015997..12016721 9..735 98 -> Plus
X 12016779..12016906 736..863 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:05 Download gff for BO06796.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11910030..11910754 9..735 98 -> Plus
arm_X 11910812..11910939 736..863 99   Plus

BO06796.complete Sequence

943 bp (943 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630535

> BO06796.complete
GAAGTTATCAGTCGACATGTCGTACAAGGTGGAACCATTGCCCGATTCCT
ACGCCGGCCTGGGCGAGGGTCCCCATTGGGATGTGGCCAGGCAAAGCCTG
TACTACGTGGATTTGGAGGCGGGCAGCCTGCTCCGCTACGACTATGCCCA
GAACAAGGTCTACAAGACGAAGATCGAGGGCGAAACCTTGGCCGGATTCG
TGCTGCCGGTGGAGGGACGTCCGCAGGAGTTCGCCGTCGGCTGCGGTCGA
CGCGTGGTGATCGTCAACTGGGATGGCGTCTCGCCCAGCGCCAAGGTGGT
GCGCACACTGTTCGAGGTGCAGCCACTGATGGAGAAGAATCGTTTGAACG
ACGCCAAGGTTGATCCCCGTGGTCGCTTCTTTGGCGGCACCATGCGCTAC
ATTGGCGATGAGTTCGAGTTCCGTCACGGCGAGCTGTACCGCTGGGAGGC
CGGTGGCCAGGTGTCGGTGATCAAGGGCGATGTGGGCATCTCCAATGGAC
TGGCATGGGACGAGAAGGCCAAGAAGTTCTACTACATCGATACCACCGAC
TACGAGGTGAAGTCGTATGACTATGATTTCGAGACCGGCGTGGCTAGCAA
TCCCAAGGTTATATTCAATCTGCGCAAGAACAGTCCCAAGGATCATCTGC
TGCCCGATGGCCTGACCATCGATACCGAGGGCAACCTGTATGTGGCCACC
TTCAATGGCGCCACCATCTACAAGGTTAATCCCAACACTGGCAAGATTCT
GCTTGAGATCAAGTTCCCAACCAAACAGATTACCTCCGCCGCCTTCGGTG
GCCCCAACTTGGACATCCTGTACGTGACCACTGCCGCCAAGTTCGATCAG
CCCGCTCCAGCTGGCACCACCTACAAGGTGACCGGACTGAACGCCACCGG
CTATCCCGGCGTCAACCTGAAGGTCGCAAGCTTTCTAGACCAT

BO06796.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
regucalcin-RD 960 CG1803-PD 49..957 17..925 4455 99.3 Plus
regucalcin-RB 912 CG1803-PB 1..909 17..925 4455 99.3 Plus
regucalcin-RC 912 CG1803-PC 1..909 17..925 4455 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
regucalcin-RD 1083 CG1803-RD 85..993 17..925 4455 99.3 Plus
regucalcin-RB 1458 CG1803-RB 143..1051 17..925 4455 99.3 Plus
regucalcin-RC 1097 CG1803-RC 99..1007 17..925 4455 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12016003..12016721 17..735 3505 99.2 Plus
X 23542271 X 12016779..12016968 736..925 950 100 Plus
3R 32079331 3R 14746410..14747125 732..17 445 70.8 Minus
Blast to na_te.dros performed on 2014-11-26 21:37:57 has no hits.

BO06796.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:06 Download gff for BO06796.complete
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RB 1..912 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:21 Download gff for BO06796.complete
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RB 121..1029 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:01 Download gff for BO06796.complete
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RC 99..1007 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:06 Download gff for BO06796.complete
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RB 121..1029 17..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:17 Download gff for BO06796.complete
Subject Subject Range Query Range Percent Splice Strand
regucalcin-RC 99..1007 17..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:17 Download gff for BO06796.complete
Subject Subject Range Query Range Percent Splice Strand
X 12016003..12016721 17..735 99 -> Plus
X 12016779..12016968 736..927 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:01 Download gff for BO06796.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11910812..11911001 736..927 98   Plus
arm_X 11910036..11910754 17..735 99 -> Plus

BO06796.pep Sequence

Translation from 16 to 943

> BO06796.pep
MSYKVEPLPDSYAGLGEGPHWDVARQSLYYVDLEAGSLLRYDYAQNKVYK
TKIEGETLAGFVLPVEGRPQEFAVGCGRRVVIVNWDGVSPSAKVVRTLFE
VQPLMEKNRLNDAKVDPRGRFFGGTMRYIGDEFEFRHGELYRWEAGGQVS
VIKGDVGISNGLAWDEKAKKFYYIDTTDYEVKSYDYDFETGVASNPKVIF
NLRKNSPKDHLLPDGLTIDTEGNLYVATFNGATIYKVNPNTGKILLEIKF
PTKQITSAAFGGPNLDILYVTTAAKFDQPAPAGTTYKVTGLNATGYPGVN
LKVASFLDH

BO06796.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
regucalcin-PB 303 CG1803-PB 1..303 1..303 1606 100 Plus
regucalcin-PC 303 CG1803-PC 1..303 1..303 1606 100 Plus
regucalcin-PA 303 CG1803-PA 1..303 1..303 1606 100 Plus
regucalcin-PD 319 CG1803-PD 17..319 1..303 1606 100 Plus
smp-30-PD 303 CG7390-PD 1..303 1..303 1173 71.9 Plus