Clone Sequence Records
BO06796.3prime Sequence
878 bp (747 high quality bases) assembled on 2005-12-03
> BO06796.3prime
ATGGTCTAGAAAGCTTGCGACCTTCAGGTTGACGCCGGGATAGCCGGTGG
CGTTCAGTCCGGTCACCTTGTAGGTGGTGCCAGCTGGAGCGGGCTGATCG
AACTTGGCGGCAGTGGTCACGTACAGGATGTCCAAGTTGGGGCCACCGAA
GGCGGCGGAGGTAATCTGTTTGGTTGGGAACTTGATCTCAAGCAGAATCT
TGCCAGTGTTGGGATTAACCTTGTAGATGGTGGCGCCATTGAAGGTGGCC
ACATACAGGTTGCCCTCGGTATCGATGGTCAGGCCATCGGGCAGCAGATG
ATCCTTGGGACTGTTCTTGCGCAGATTGAATATAACCTTGGGATTGCTAG
CCACGCCGGTCTCGAAATCATAGTCATACGACTTCACCTCGTAGTCGGTG
GTATCGATGTAGTAGAACTTCTTGGCCTTCTCGTCCCATGCCAGTCCATT
GGAGATGCCCACATCGCCCTTGATCACCGACACCTGGCCACCGGCCTCCC
AGCGGTACAGCTCGCCGTGACGGAACTCGAACTCATCGCCAATGTAGCGC
ATGGTGCCGCCAAAGAAGCGACCACGGGGATCAACCTTGGCGTCGTTCAA
ACGATTCTTCTCCATCAGTGGCTGCACCTCGAACAGTGTGCGCACCACCT
TGGCGCTGGGCGAGACGCCATCCCAGTTGACGATCACCACGCGTCGACCG
CAGCCGACGGCGAACTCCTGCGGACGTCCCTCCACCGGCAGCACGAATCC
GGCCAAGGTTTCGCCCTCGATCTTCGTCTTGTAGACCTTGTTCTGGGCAT
AGTCGTAGCGGAGCAGGCTGCCCGCCTCAAAATCCACGTAGTACAGGCTT
TGCCTGGCCACATCCCAATGGGGACCCT
BO06796.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1803-PA | 912 | regucalcin-RA | 50..909 | 878..19 | 4125 | 99.1 | Minus |
CG1803-PC | 912 | regucalcin-RC | 50..909 | 878..19 | 4125 | 99.1 | Minus |
CG1803-PB | 912 | regucalcin-RB | 50..909 | 878..19 | 4125 | 99.1 | Minus |
CG1803-PD | 960 | regucalcin-RD | 98..957 | 878..19 | 4125 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
regucalcin-RD | 1083 | CG1803-RD | 134..993 | 878..19 | 4195 | 99.2 | Minus |
regucalcin-RB | 1458 | CG1803-RB | 192..1051 | 878..19 | 4195 | 99.2 | Minus |
regucalcin-RC | 1097 | CG1803-RC | 148..1007 | 878..19 | 4195 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12016052..12016721 | 878..209 | 3245 | 99 | Minus |
X | 23542271 | X | 12016779..12016968 | 208..19 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:23:02 has no hits.
BO06796.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:49 Download gff for
BO06796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1803-PB | 50..912 | 18..878 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:05 Download gff for
BO06796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1803-PD | 98..960 | 18..878 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:02 Download gff for
BO06796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RC | 148..1007 | 19..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:34:55 Download gff for
BO06796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RC | 148..1007 | 19..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:34:55 Download gff for
BO06796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12016052..12016721 | 209..878 | 98 | -> | Minus |
X | 12016779..12016968 | 19..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:02 Download gff for
BO06796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11910085..11910754 | 209..878 | 98 | -> | Minus |
arm_X | 11910812..11911001 | 19..208 | 100 | | Minus |
BO06796.5prime Sequence
863 bp (762 high quality bases) assembled on 2005-12-03
> BO06796.5prime
GAAGTTATCAGTCGACATGTCGTACAAGGTGGAACCATTGCCCGATTCCT
ACGCCGGCCTGGGCGAGGGTCCCCATTGGGATGTGGCCAGGCAAAGCCTG
TACTACGTGGATTTGGAGGCGGGCAGCCTGCTCCGCTACGACTATGCCCA
GAACAAGGTCTACAAGACGAAGATCGAGGGCGAAACCTTGGCCGGATTCG
TGCTGCCGGTGGAGGGACGTCCGCAGGAGTTCGCCGTCGGCTGCGGTCGA
CGCGTGGTGATCGTCAACTGGGATGGCGTCTCGCCCAGCGCCAAGGTGGT
GCGCACACTGTTCGAGGTGCAGCCACTGATGGAGAAGAATCGTTTGAACG
ACGCCAAGGTTGATCCCCGTGGTCGCTTCTTTGGCGGCACCATGCGCTAC
ATTGGCGATGAGTTCGAGTTCCGTCACGGCGAGCTGTACCGCTGGGAGGC
CGGTGGCCAGGTGTCGGTGATCAAGGGCGATGTGGGCATCTCCAATGGAC
TGGCATGGGACGAGAAGGCCAAGAAGTTCTACTACATCGATACCACCGAC
TACGAGGTGAAGTCGTATGACTATGATTTCGAGACCGGCGTGGCTAGCAA
TCCCAAGGTTATATTCAATCTGCGCAAGAACAGTCCCAAGGATCATCTGC
TGCCCGATGGCCTGACCATCGATACCGAGGGCAACCTGTATGTGGCCACC
TTCAATGGCGCCACCATCTACAAGGTTAATCCCAACACTGGCAAGATTCT
GCTTGAGATCAAGTTCCCAACCAAACAGATTACCTCCGCCGCCTTCGGTG
GCCCCCACTTGGACATCCTGTACGTGACCACTGCCGCCAAGTTCGATCAG
CCCGCTCCAGCTG
BO06796.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1803-PA | 912 | regucalcin-RA | 1..847 | 17..863 | 4060 | 99.1 | Plus |
CG1803-PC | 912 | regucalcin-RC | 1..847 | 17..863 | 4060 | 99.1 | Plus |
CG1803-PB | 912 | regucalcin-RB | 1..847 | 17..863 | 4060 | 99.1 | Plus |
CG1803-PD | 960 | regucalcin-RD | 49..895 | 17..863 | 4060 | 99.1 | Plus |
CG7390-PA | 912 | smp-30-RA | 25..68 | 41..84 | 145 | 93.1 | Plus |
CG7390-PB | 912 | smp-30-RB | 25..68 | 41..84 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
regucalcin-RD | 1083 | CG1803-RD | 85..931 | 17..863 | 4130 | 99.2 | Plus |
regucalcin-RB | 1458 | CG1803-RB | 143..989 | 17..863 | 4130 | 99.2 | Plus |
regucalcin-RC | 1097 | CG1803-RC | 99..945 | 17..863 | 4130 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:23:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12016003..12016721 | 17..735 | 3505 | 99.2 | Plus |
X | 23542271 | X | 12016779..12016906 | 736..863 | 625 | 99.2 | Plus |
3R | 32079331 | 3R | 14746410..14747125 | 732..17 | 445 | 70.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:23:21 has no hits.
BO06796.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:50 Download gff for
BO06796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1803-PC | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:06 Download gff for
BO06796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1803-PD | 49..895 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:05 Download gff for
BO06796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RC | 99..945 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:35:06 Download gff for
BO06796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RC | 99..945 | 17..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:35:06 Download gff for
BO06796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12015997..12016721 | 9..735 | 98 | -> | Plus |
X | 12016779..12016906 | 736..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:05 Download gff for
BO06796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11910030..11910754 | 9..735 | 98 | -> | Plus |
arm_X | 11910812..11910939 | 736..863 | 99 | | Plus |
BO06796.complete Sequence
943 bp (943 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630535
> BO06796.complete
GAAGTTATCAGTCGACATGTCGTACAAGGTGGAACCATTGCCCGATTCCT
ACGCCGGCCTGGGCGAGGGTCCCCATTGGGATGTGGCCAGGCAAAGCCTG
TACTACGTGGATTTGGAGGCGGGCAGCCTGCTCCGCTACGACTATGCCCA
GAACAAGGTCTACAAGACGAAGATCGAGGGCGAAACCTTGGCCGGATTCG
TGCTGCCGGTGGAGGGACGTCCGCAGGAGTTCGCCGTCGGCTGCGGTCGA
CGCGTGGTGATCGTCAACTGGGATGGCGTCTCGCCCAGCGCCAAGGTGGT
GCGCACACTGTTCGAGGTGCAGCCACTGATGGAGAAGAATCGTTTGAACG
ACGCCAAGGTTGATCCCCGTGGTCGCTTCTTTGGCGGCACCATGCGCTAC
ATTGGCGATGAGTTCGAGTTCCGTCACGGCGAGCTGTACCGCTGGGAGGC
CGGTGGCCAGGTGTCGGTGATCAAGGGCGATGTGGGCATCTCCAATGGAC
TGGCATGGGACGAGAAGGCCAAGAAGTTCTACTACATCGATACCACCGAC
TACGAGGTGAAGTCGTATGACTATGATTTCGAGACCGGCGTGGCTAGCAA
TCCCAAGGTTATATTCAATCTGCGCAAGAACAGTCCCAAGGATCATCTGC
TGCCCGATGGCCTGACCATCGATACCGAGGGCAACCTGTATGTGGCCACC
TTCAATGGCGCCACCATCTACAAGGTTAATCCCAACACTGGCAAGATTCT
GCTTGAGATCAAGTTCCCAACCAAACAGATTACCTCCGCCGCCTTCGGTG
GCCCCAACTTGGACATCCTGTACGTGACCACTGCCGCCAAGTTCGATCAG
CCCGCTCCAGCTGGCACCACCTACAAGGTGACCGGACTGAACGCCACCGG
CTATCCCGGCGTCAACCTGAAGGTCGCAAGCTTTCTAGACCAT
BO06796.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
regucalcin-RD | 960 | CG1803-PD | 49..957 | 17..925 | 4455 | 99.3 | Plus |
regucalcin-RB | 912 | CG1803-PB | 1..909 | 17..925 | 4455 | 99.3 | Plus |
regucalcin-RC | 912 | CG1803-PC | 1..909 | 17..925 | 4455 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:38:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
regucalcin-RD | 1083 | CG1803-RD | 85..993 | 17..925 | 4455 | 99.3 | Plus |
regucalcin-RB | 1458 | CG1803-RB | 143..1051 | 17..925 | 4455 | 99.3 | Plus |
regucalcin-RC | 1097 | CG1803-RC | 99..1007 | 17..925 | 4455 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:37:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12016003..12016721 | 17..735 | 3505 | 99.2 | Plus |
X | 23542271 | X | 12016779..12016968 | 736..925 | 950 | 100 | Plus |
3R | 32079331 | 3R | 14746410..14747125 | 732..17 | 445 | 70.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:37:57 has no hits.
BO06796.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:06 Download gff for
BO06796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RB | 1..912 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:21 Download gff for
BO06796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RB | 121..1029 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:01 Download gff for
BO06796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RC | 99..1007 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:06 Download gff for
BO06796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RB | 121..1029 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:17 Download gff for
BO06796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
regucalcin-RC | 99..1007 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:17 Download gff for
BO06796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12016003..12016721 | 17..735 | 99 | -> | Plus |
X | 12016779..12016968 | 736..927 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:01 Download gff for
BO06796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11910812..11911001 | 736..927 | 98 | | Plus |
arm_X | 11910036..11910754 | 17..735 | 99 | -> | Plus |
BO06796.pep Sequence
Translation from 16 to 943
> BO06796.pep
MSYKVEPLPDSYAGLGEGPHWDVARQSLYYVDLEAGSLLRYDYAQNKVYK
TKIEGETLAGFVLPVEGRPQEFAVGCGRRVVIVNWDGVSPSAKVVRTLFE
VQPLMEKNRLNDAKVDPRGRFFGGTMRYIGDEFEFRHGELYRWEAGGQVS
VIKGDVGISNGLAWDEKAKKFYYIDTTDYEVKSYDYDFETGVASNPKVIF
NLRKNSPKDHLLPDGLTIDTEGNLYVATFNGATIYKVNPNTGKILLEIKF
PTKQITSAAFGGPNLDILYVTTAAKFDQPAPAGTTYKVTGLNATGYPGVN
LKVASFLDH
BO06796.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
regucalcin-PB | 303 | CG1803-PB | 1..303 | 1..303 | 1606 | 100 | Plus |
regucalcin-PC | 303 | CG1803-PC | 1..303 | 1..303 | 1606 | 100 | Plus |
regucalcin-PA | 303 | CG1803-PA | 1..303 | 1..303 | 1606 | 100 | Plus |
regucalcin-PD | 319 | CG1803-PD | 17..319 | 1..303 | 1606 | 100 | Plus |
smp-30-PD | 303 | CG7390-PD | 1..303 | 1..303 | 1173 | 71.9 | Plus |