Clone Sequence Records
BO06802.3prime Sequence
701 bp (700 high quality bases) assembled on 2005-12-03
> BO06802.3prime
ATGGTCTAGAAAGCTTGCGCTTTTCAATGGGCCTTTATTAATTGAAACAT
ATTTAAGGCTATCACAGTGTATCTTATACTCCAATGCCGTTGTTAGAGGT
ATATTTAATATCCTGCGTAACGTATCACGGATACGTGTTGTACTGGTCAT
ATCAGTGGCAGTCCGGTGCCATACTGATAAGCTATCCTCCGGATATTTCG
TCTGTAGCACGACTCCGCATATCTCGTCGCCGACGAGGAACTGCTCCCCG
AGCATCGCCATACAAACGTTCTCCCAGGCCCGGTCGACCTTGTTCTTGCG
CAGTCGTATCAACCACTGGCCGCCCTTGCTGTTCGCCGGGTCCTCCCACA
TCGGTATGATGCCCTGCTTGAAGAGGAGGAGCTCCCGGTAGGGCTTCAGG
GCGGTGGGCCGGATGAGGTGCGAGTAGAGCGACCACCACTGCTGCACGCT
GGCGCACCGGCCGACCATGTGCAGCGACTTGCTGTAGTCGGCGGCCGCCC
GCTGCGTCTCCTTGCGAGAGAACCAGAGGCAGTATGTGTGCTGCAGCCGG
TTCTCGCCGGGTCCCACCTCCAGTGGTGGCAGGTTGTCCACATCTATCTG
ATTATCCACATCGCTGTCGTCGCTGTCGACAATATCTGGCCAGTTTTTCG
TCTCGTACTGCTTGTTGGCTACTTTCTCCATGCTCATGTCGACTGATAAC
T
BO06802.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33100-PA | 672 | 4EHP-RA | 1..669 | 687..19 | 3270 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4EHP-RA | 1855 | CG33100-RA | 454..1122 | 687..19 | 3300 | 99.6 | Minus |
4EHP-RD | 1324 | CG33100-RD | 454..1100 | 687..41 | 3190 | 99.5 | Minus |
4EHP-RC | 4539 | CG33100-RC | 454..951 | 687..190 | 2445 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24106824..24107284 | 189..649 | 2260 | 99.3 | Plus |
3R | 32079331 | 3R | 24064182..24064331 | 41..190 | 750 | 100 | Plus |
3R | 32079331 | 3R | 24108469..24108507 | 649..687 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:07:21 has no hits.
BO06802.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:54 Download gff for
BO06802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-PA | 1..672 | 16..687 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:11 Download gff for
BO06802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33100-PA | 1..672 | 16..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:04 Download gff for
BO06802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 450..1129 | 11..695 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:55:41 Download gff for
BO06802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 450..1129 | 11..695 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:55:41 Download gff for
BO06802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24064182..24064330 | 41..189 | 100 | <- | Plus |
3R | 24108470..24108511 | 650..695 | 91 | | Plus |
3R | 24106825..24107284 | 190..649 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:04 Download gff for
BO06802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19889904..19890052 | 41..189 | 100 | <- | Plus |
arm_3R | 19932547..19933006 | 190..649 | 99 | <- | Plus |
arm_3R | 19934192..19934233 | 650..695 | 91 | | Plus |
BO06802.5prime Sequence
701 bp (632 high quality bases) assembled on 2005-12-03
> BO06802.5prime
GAAGTTATCAGTCGACATGAGCATGGAGAAAGTAGCCAACAAGCAGTACG
AGACGAAAAACTGGCCAGATATTGTCGACAGCGACGACAGCGATGTGGAT
AATCAGATAGATGTGGACAACCTGCCACCACTGGAGGTGGGACCCGGCGA
GAACCGGCTGCAGCACACATACTGCCTCTGGTTCTCTCGCAAGGAGACGC
AGCGGGCGGCCGCCGACTACAGCAAGTCGCTGCACATGGTCGGCCGGTGC
GCCAGCGTGCAGCAGTGGTGGTCGCTCTACTCGCACCTCATCCGGCCCAC
CGCCCTGAAGCCCTACCGGGAGCTCCTCCTCTTCAAGCAGGGCATCATAC
CGATGTGGGAGGACCCGGCGAACAGCAAGGGCGGCCAGTGGTTGATACGA
CTGCGCAAGAACAAGGTCGACCGGGCCTGGGAGAACGTTTGTATGGCGAT
GCTCGGGGAGCAGTTCCTCGTCGGCGACGAGATATGCGGAGTCGTGCTAC
AGACGAAATATCCGGAGGATAGCTTATCAGTATGGCACCGGACTGCCACT
GATATGACCAGTACAACACGTATCCGTGATACGTTACGCAGGATATTAAA
TATACCTCTAACAACGGCATTGGAGTATAAGATACGCTGTGATAGCCTTA
AATATGTTTCAATTAATAAAGGCCCATTGAAAAGCGCAAGCTTTCTAGAC
C
BO06802.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33100-PA | 672 | 4EHP-RA | 1..669 | 17..685 | 3245 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4EHP-RA | 1855 | CG33100-RA | 454..1122 | 17..685 | 3285 | 99.4 | Plus |
4EHP-RD | 1324 | CG33100-RD | 454..1100 | 17..663 | 3175 | 99.4 | Plus |
4EHP-RC | 4539 | CG33100-RC | 454..951 | 17..514 | 2445 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24106824..24107284 | 515..55 | 2260 | 99.3 | Minus |
3R | 32079331 | 3R | 24064182..24064331 | 663..514 | 735 | 99.3 | Minus |
3R | 32079331 | 3R | 24108469..24108507 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:47:32 has no hits.
BO06802.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:55 Download gff for
BO06802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-PA | 1..672 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:12 Download gff for
BO06802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33100-PA | 1..672 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:45 Download gff for
BO06802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 450..1129 | 9..693 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:37 Download gff for
BO06802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 450..1129 | 9..693 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:37 Download gff for
BO06802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24064182..24064330 | 515..663 | 99 | <- | Minus |
3R | 24106825..24107284 | 55..514 | 99 | <- | Minus |
3R | 24108470..24108511 | 9..54 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:45 Download gff for
BO06802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19889904..19890052 | 515..663 | 99 | <- | Minus |
arm_3R | 19932547..19933006 | 55..514 | 99 | <- | Minus |
arm_3R | 19934192..19934233 | 9..54 | 91 | | Minus |
BO06802.complete Sequence
703 bp (703 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630536
> BO06802.complete
GAAGTTATCAGTCGACATGAGCATGGAGAAAGTAGCCAACAAGCAGTACG
AGACGAAAAACTGGCCAGATATTGTCGACAGCGACGACAGCGATGTGGAT
AATCAGATAGATGTGGACAACCTGCCACCACTGGAGGTGGGACCCGGCGA
GAACCGGCTGCAGCACACATACTGCCTCTGGTTCTCTCGCAAGGAGACGC
AGCGGGCGGCCGCCGACTACAGCAAGTCGCTGCACATGGTCGGCCGGTGC
GCCAGCGTGCAGCAGTGGTGGTCGCTCTACTCGCACCTCATCCGGCCCAC
CGCCCTGAAGCCCTACCGGGAGCTCCTCCTCTTCAAGCAGGGCATCATAC
CGATGTGGGAGGACCCGGCGAACAGCAAGGGCGGCCAGTGGTTGATACGA
CTGCGCAAGAACAAGGTCGACCGGGCCTGGGAGAACGTTTGTATGGCGAT
GCTCGGGGAGCAGTTCCTCGTCGGCGACGAGATATGCGGAGTCGTGCTAC
AGACGAAATATCCGGAGGATAGCTTATCAGTATGGCACCGGACTGCCACT
GATATGACCAGTACAACACGTATCCGTGATACGTTACGCAGGATATTAAA
TATACCTCTAACAACGGCATTGGAGTATAAGATACACTGTGATAGCCTTA
AATATGTTTCAATTAATAAAGGCCCATTGAAAAGCGCAAGCTTTCTAGAC
CAT
BO06802.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4EHP-RA | 672 | CG33100-PA | 1..669 | 17..685 | 3300 | 99.6 | Plus |
4EHP-RD | 729 | CG33100-PD | 1..647 | 17..663 | 3190 | 99.5 | Plus |
4EHP-RC | 561 | CG33100-PC | 1..498 | 17..514 | 2445 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4EHP-RA | 1855 | CG33100-RA | 454..1122 | 17..685 | 3300 | 99.6 | Plus |
4EHP-RD | 1324 | CG33100-RD | 454..1100 | 17..663 | 3190 | 99.5 | Plus |
4EHP-RC | 4539 | CG33100-RC | 454..951 | 17..514 | 2445 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24106824..24107284 | 515..55 | 2260 | 99.3 | Minus |
3R | 32079331 | 3R | 24064182..24064331 | 663..514 | 750 | 100 | Minus |
3R | 32079331 | 3R | 24108469..24108507 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:32:13 has no hits.
BO06802.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:07 Download gff for
BO06802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 1..672 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:08 Download gff for
BO06802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 443..1111 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:54 Download gff for
BO06802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 454..1122 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:08 Download gff for
BO06802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 439..1118 | 9..693 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:15 Download gff for
BO06802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4EHP-RA | 454..1122 | 17..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:15 Download gff for
BO06802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24063807..24063831 | 664..687 | 92 | <- | Minus |
3R | 24064182..24064330 | 515..663 | 100 | <- | Minus |
3R | 24106825..24107284 | 55..514 | 99 | <- | Minus |
3R | 24108470..24108507 | 17..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:54 Download gff for
BO06802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19889529..19889553 | 664..687 | 92 | <- | Minus |
arm_3R | 19889904..19890052 | 515..663 | 100 | <- | Minus |
arm_3R | 19932547..19933006 | 55..514 | 99 | <- | Minus |
arm_3R | 19934192..19934229 | 17..54 | 100 | | Minus |
BO06802.pep Sequence
Translation from 16 to 703
> BO06802.pep
MSMEKVANKQYETKNWPDIVDSDDSDVDNQIDVDNLPPLEVGPGENRLQH
TYCLWFSRKETQRAAADYSKSLHMVGRCASVQQWWSLYSHLIRPTALKPY
RELLLFKQGIIPMWEDPANSKGGQWLIRLRKNKVDRAWENVCMAMLGEQF
LVGDEICGVVLQTKYPEDSLSVWHRTATDMTSTTRIRDTLRRILNIPLTT
ALEYKIHCDSLKYVSINKGPLKSASFLDH
BO06802.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4EHP-PA | 223 | CG33100-PA | 1..223 | 1..223 | 1199 | 100 | Plus |
4EHP-PD | 242 | CG33100-PD | 1..216 | 1..216 | 1159 | 99.5 | Plus |
4EHP-PB | 248 | CG33100-PB | 1..172 | 1..172 | 914 | 97.7 | Plus |
4EHP-PC | 186 | CG33100-PC | 1..166 | 1..166 | 905 | 100 | Plus |
eIF4E-7-PA | 429 | CG32859-PA | 231..415 | 26..210 | 284 | 31.9 | Plus |