Clone Sequence Records
BO06804.3prime Sequence
931 bp (850 high quality bases) assembled on 2005-12-03
> BO06804.3prime
ATGGTCTAGAAAGCTTGCATAGCCGGGTATGATGCGACCCCTCTTGCTGG
CCGTCTTTAGTTTCCGGTTCTTCTTGTCCTTGCTGCGCTTCTCCAGGTTC
TCCTGTCGCTTCTTTTGCCTCTTTTCCTTGTCGTGCTCCACCTTCTGCTT
GCGTTCAGTCCACTTGGTCTTGGACTTCTTCTTCTCCACGCGCCGCTTCT
TGATGGCCTTTTGCAGCAGCTTGGTGTCGTCCTTGACCTTCTTGCCCTCG
ACCTTGTCGAATGCGTTGCGCCAGGCGATGTCCGTCTGGATCTCCGCCGC
CTTGTCCGTTTCGCCCTGTTCGCGCAGTTCGGTTAGGTGCTTCTTGGTGT
CGCGCAGCTTCTTCAGAATCTCCTTGGGGTTTTGGTGAGACTTCTTGGCT
TTGCCTCCAGGATTGGCGGCAAAGTCCACCTTGGAGTAGACGATCTTGGC
CTCCTGGTTGTAAACCGGTTGCACCTTGACCGGCTGGATCTGTTCCTTGC
TGTCCTCCGTCTCCTGTTCTGATTTCACCACGCCATTCTTCAGTTTCTGG
TGCTTGACGTTCTCGTTTTTGAGGTTTTTGGCCGAGGAGAGGAGCAGTTT
CTGGACGCCCTTGCTGCGTTTAAGCTTTTTAGATTCGCGTCGCTTCTGCT
GTCGCTCCGTTGTGGGTCCCTTTTTCTGGCGCAGCTTGTTCTTGATGGAG
GCAATGCGTGCCTCTACATCCTCGTCGTCGGAGTCTTGGTTTTTCAGTTT
TCCCTGTTGTTTCTTTTTCTTGTTTCCCGATTCCTCCGTGTCCGACAGCA
GGTACTCTTCGTAGGTCTCCTCATCTTCTTGTTTGGAGTAGGGCACTTTG
TGAATGGTCAGCAGTTCCAAGACTCGCTGATAGAACTTTTTGGTGATGGC
GGGCAGGTCCTCCTTCTCCGGCTTCTGATCC
BO06804.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4510-PA | 975 | Surf6-RA | 60..972 | 931..19 | 4565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf6-RA | 1150 | CG4510-RA | 140..1052 | 931..19 | 4565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19903763..19904570 | 19..826 | 4040 | 100 | Plus |
| 3R | 32079331 | 3R | 19904619..19904729 | 821..931 | 540 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:50:33 has no hits.
BO06804.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:58 Download gff for
BO06804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-PA | 60..975 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:16 Download gff for
BO06804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4510-PA | 60..975 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:13 Download gff for
BO06804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 139..1056 | 12..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:42 Download gff for
BO06804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 140..1057 | 12..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:42 Download gff for
BO06804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19903758..19904568 | 12..824 | 99 | <- | Plus |
| 3R | 19904623..19904729 | 825..931 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:13 Download gff for
BO06804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15729480..15730290 | 12..824 | 99 | <- | Plus |
| arm_3R | 15730345..15730451 | 825..931 | 100 | | Plus |
BO06804.5prime Sequence
818 bp (816 high quality bases) assembled on 2005-12-03
> BO06804.5prime
GAAGTTATCAGTCGACATGACCCAGGCGGAGATCGTGAAATGTCTGCGGG
AGGAGTATGAAATCGAACACAACAAGGATCAGAAGCCGGAGAAGGAGGAC
CTGCCCGCCATCACCAAAAAGTTCTATCAGCGAGTCTTGGAACTGCTGAC
CATTCACAAAGTGCCCTACTCCAAACAAGAAGATGAGGAGACCTACGAAG
AGTACCTGCTGTCGGACACGGAGGAATCGGGAAACAAGAAAAAGAAACAA
CAGGGAAAACTGAAAAACCAAGACTCCGACGACGAGGATGTAGAGGCACG
CATTGCCTCCATCAAGAACAAGCTGCGCCAGAAAAAGGGACCCACAACGG
AGCGACAGCAGAAGCGACGCGAATCTAAAAAGCTTAAACGCAGCAAGGGC
GTCCAGAAACTGCTCCTCTCCTCGGCCAAAAACCTCAAAAACGAGAACGT
CAAGCACCAGAAACTGAAGAATGGCGTGGTGAAATCAGAACAGGAGACGG
AGGACAGCAAGGAACAGATCCAGCCGGTCAAGGTGCAACCGGTTTACAAC
CAGGAGGCCAAGATCGTCTACTCCAAGGTGGACTTTGCCGCCAATCCTGG
AGGCAAAGCCAAGAAGTCTCACCAAAACCCCAAGGAGATTCTGAAGAAGC
TGCGCGACACCAAGAAGCACCTAACCGAACTGCGCGAACAGGGCGAAACG
GACAAGGCGGCGGAGATCCAGACGGACATCGCCTGGCGCAACGCATTCGA
CAAGGTCGAGGGCAAGAAGGTCAAGGACGACACCAAGCTGCTGCAAAAGG
CCATCAAGAAGCGGCGCG
BO06804.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4510-PA | 975 | Surf6-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf6-RA | 1150 | CG4510-RA | 81..882 | 17..818 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19903933..19904570 | 818..181 | 3190 | 100 | Minus |
| 3R | 32079331 | 3R | 19904619..19904788 | 186..17 | 835 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:09:37 has no hits.
BO06804.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:59:59 Download gff for
BO06804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:17 Download gff for
BO06804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4510-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:16 Download gff for
BO06804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 72..881 | 8..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:36:32 Download gff for
BO06804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 73..882 | 8..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:36:32 Download gff for
BO06804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19904623..19904796 | 8..182 | 97 | | Minus |
| 3R | 19903933..19904568 | 183..818 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:16 Download gff for
BO06804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15729655..15730290 | 183..818 | 100 | <- | Minus |
| arm_3R | 15730345..15730518 | 8..182 | 97 | | Minus |
BO06804.complete Sequence
1006 bp (1006 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630537
> BO06804.complete
GAAGTTATCAGTCGACATGACCCAGGCGGAGATCGTGAAATGTCTGCGGG
AGGAGTATGAAATCGAACACAACAAGGATCAGAAGCCGGAGAAGGAGGAC
CTGCCCGCCATCACCAAAAAGTTCTATCAGCGAGTCTTGGAACTGCTGAC
CATTCACAAAGTGCCCTACTCCAAACAAGAAGATGAGGAGACCTACGAAG
AGTACCTGCTGTCGGACACGGAGGAATCGGGAAACAAGAAAAAGAAACAA
CAGGGAAAACTGAAAAACCAAGACTCCGACGACGAGGATGTAGAGGCACG
CATTGCCTCCATCAAGAACAAGCTGCGCCAGAAAAAGGGACCCACAACGG
AGCGACAGCAGAAGCGACGCGAATCTAAAAAGCTTAAACGCAGCAAGGGC
GTCCAGAAACTGCTCCTCTCCTCGGCCAAAAACCTCAAAAACGAGAACGT
CAAGCACCAGAAACTGAAGAATGGCGTGGTGAAATCAGAACAGGAGACGG
AGGACAGCAAGGAACAGATCCAGCCGGTCAAGGTGCAACCGGTTTACAAC
CAGGAGGCCAAGATCGTCTACTCCAAGGTGGACTTTGCCGCCAATCCTGG
AGGCAAAGCCAAGAAGTCTCACCAAAACCCCAAGGAGATTCTGAAGAAGC
TGCGCGACACCAAGAAGCACCTAACCGAACTGCGCGAACAGGGCGAAACG
GACAAGGCGGCGGAGATCCAGACGGACATCGCCTGGCGCAACGCATTCGA
CAAGGTCGAGGGCAAGAAGGTCAAGGACGACACCAAGCTGCTGCAAAAGG
CCATCAAGAAGCGGCGCGTGGAGAAGAAGAAGTCCAAGACCAAGTGGACT
GAACGCAAGCAGAAGGTGGAGCACGACAAGGAAAAGAGGCAAAAGAAGCG
ACAGGAGAACCTGGAGAAGCGCAGCAAGGACAAGAAGAACCGGAAACTAA
AGACGGCCAGCAAGAGGGGTCGCATCATACCCGGCTATGCAAGCTTTCTA
GACCAT
BO06804.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf6-RA | 975 | CG4510-PA | 1..972 | 17..988 | 4860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf6-RA | 1150 | CG4510-RA | 81..1052 | 17..988 | 4860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19903763..19904570 | 988..181 | 4040 | 100 | Minus |
| 3R | 32079331 | 3R | 19904619..19904788 | 186..17 | 835 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:11:39 has no hits.
BO06804.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:09 Download gff for
BO06804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 1..975 | 17..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:24 Download gff for
BO06804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 72..1056 | 8..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:38 Download gff for
BO06804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 80..1051 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:09 Download gff for
BO06804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 72..1056 | 8..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:44 Download gff for
BO06804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 81..1052 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:44 Download gff for
BO06804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19904623..19904788 | 17..182 | 100 | | Minus |
| 3R | 19903761..19904568 | 183..990 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:38 Download gff for
BO06804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15729483..15730290 | 183..990 | 99 | <- | Minus |
| arm_3R | 15730345..15730510 | 17..182 | 100 | | Minus |
BO06804.pep Sequence
Translation from 16 to 1006
> BO06804.pep
MTQAEIVKCLREEYEIEHNKDQKPEKEDLPAITKKFYQRVLELLTIHKVP
YSKQEDEETYEEYLLSDTEESGNKKKKQQGKLKNQDSDDEDVEARIASIK
NKLRQKKGPTTERQQKRRESKKLKRSKGVQKLLLSSAKNLKNENVKHQKL
KNGVVKSEQETEDSKEQIQPVKVQPVYNQEAKIVYSKVDFAANPGGKAKK
SHQNPKEILKKLRDTKKHLTELREQGETDKAAEIQTDIAWRNAFDKVEGK
KVKDDTKLLQKAIKKRRVEKKKSKTKWTERKQKVEHDKEKRQKKRQENLE
KRSKDKKNRKLKTASKRGRIIPGYASFLDH
BO06804.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf6-PA | 324 | CG4510-PA | 1..324 | 1..324 | 1649 | 100 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1374..1664 | 7..326 | 183 | 23.5 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1374..1664 | 7..326 | 183 | 23.5 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1328..1619 | 12..316 | 168 | 21.3 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1328..1619 | 12..316 | 168 | 21.3 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1323..1570 | 56..316 | 159 | 23.8 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1323..1570 | 56..316 | 159 | 23.8 | Plus |
| CG2839-PA | 826 | CG2839-PA | 446..747 | 11..312 | 154 | 15.6 | Plus |
| eIF5B-PD | 1090 | CG10840-PD | 74..376 | 21..317 | 154 | 21.1 | Plus |
