Clone BO06806 Report

Search the DGRC for BO06806

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptMED30-RA
Protein status:BO06806.pep: validated full length
Sequenced Size:988

Clone Sequence Records

BO06806.3prime Sequence

985 bp (856 high quality bases) assembled on 2005-12-03

> BO06806.3prime
ATGGTCTAGAAAGCTTGCTGAGCGCCGCATGGCCAGCATGGTGTTGATCT
CCCAGATGATGATGCGTGTCCGATCGATGATCTCGCGTAGCTGCCTGTTC
TTCAGCTTGACGGTCTCTATGAGTTCATGGTTCTCCTGCAGGACTTTCCG
GTACTCATCGCACAGCGAGGGCTCGATTCTCGGTTCCGGCTCATCGCGGT
AGGGAATCAGACTCTCGGCGCTCATGTAATCCATTCCGGCGTCGTTGCAC
TTCTCGTAGATGATGCGCACCCTCTTGAAGAGCAGCCGGATGGTGCGGAA
GTACTCCTGCACCTTCTTCTCGGAGCTGTTTTCCCTGTGCGAGGTGGGCT
GGATGCCCTTGAGGGAGGCGAAGACCTCCTGGAAGCGCGAGGCGATATCC
TGCACCGTTTCCTGACCGAGACGGGACAGCTGCACAATGTTAATCTCCTT
GTGAGGATTTTGCTGCGAGATAGCCAGCATATTGTTGCTGCCCCCGGCTC
CACCGGGTGGAATTCCTGCGACCGGATTGAGTTGCTGTTGCTGTTGGGGA
ATGTTCTGCTGGGGCATGTTTTGTTGGGGCTGCTGTTGCTGCTGCTGTGG
AACCACTCCCCCTCCGCCCATTCCCACACCACCGCCCATTCCCACTCCGA
CGCCCACTCCTTGTTGGGGCACCATCATTTGCTGCTGCATCATCTGCTGC
TGCTGCTGTTGCTGCATCTGGTGCTGCGGAGACATGCCGGGCATCAGGCC
GCCAGGACCTCCAGGTCCTTGGGGATTCATCTGCATGCTACCCGGGCCGC
CCATCATGCCCATTTGTTGTTGCTGCTGTTGATGTTGAGGCGACATGTGC
ATTTGCTGCATATTGCCGTGCTGCATGCCAAATCCACCCATCGGCATCAT
GTTGGGGGCCCCGCCTCCTCCGCCGCGCTCGATGGTCCCTGATTACCCTG
GTTTTGACCGTATTTCCACATGTCGACTGATAACT

BO06806.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17183-PA 957 MED30-RA 47..954 926..19 4515 99.8 Minus
CG17183-PA 957 MED30-RA 1..46 971..926 230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
MED30-RA 1103 CG17183-RA 80..1033 971..19 4730 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 653057..654010 19..971 4705 99.8 Plus
Blast to na_te.dros performed 2015-02-11 03:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..7112 859..484 159 53.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2674 869..524 144 53.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2682 874..549 132 54.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2601..2958 873..531 132 53.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2742..2947 879..675 125 55.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6793 873..814 119 70.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2795..2852 841..781 117 70.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6710..6882 852..680 117 55.9 Minus

BO06806.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:03 Download gff for BO06806.3prime
Subject Subject Range Query Range Percent Splice Strand
MED30-PA 1..957 18..971 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:21 Download gff for BO06806.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17183-PA 1..957 18..971 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:54:08 Download gff for BO06806.3prime
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 80..1038 13..971 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:40:22 Download gff for BO06806.3prime
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 80..1038 13..971 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:22 Download gff for BO06806.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 653052..654010 13..971 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:54:08 Download gff for BO06806.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 653052..654010 13..971 99   Plus

BO06806.5prime Sequence

885 bp (850 high quality bases) assembled on 2005-12-03

> BO06806.5prime
GAAGTTATCAGTCGACATGTGGAAATACGGTCAAAACCAGGGTAATCAGG
GACCATCGAGCGGCGGCGGAGGAGGCGGGGGCCCCAACATGATGCCGATG
GGTGGATTTGGCATGCAGCACGGCAATATGCAGCAAATGCACATGTCGCC
TCAACATCAACAGCAGCAACAACAAATGGGCATGATGGGCGGCCCGGGTA
GCATGCAGATGAATCCCCAAGGACCTGGAGGTCCTGGCGGCCTGATGCCC
GGCATGTCTCCGCAGCACCAGATGCAGCAACAGCAGCAGCAGCAGATGAT
GCAGCAGCAAATGATGGTGCCCCAACAAGGAGTGGGCGTCGGAGTGGGAA
TGGGCGGTGGTGTGGGAATGGGCGGAGGGGGAGTGGTTCCACAGCAGCAG
CAACAGCAGCCCCAACAAAACATGCCCCAGCAGAACATTCCCCAACAGCA
ACAGCAACTCAATCCGGTCGCAGGAATTCCACCCGGTGGAGCCGGGGGCA
GCAACAATATGCTGGCTATCTCGCAGCAAAATCCTCACAAGGAGATTAAC
ATTGTGCAGCTGTCCCGTCTCGGTCAGGAAACGGTGCAGGATATCGCCTC
GCGCTTCCAGGAGGTCTTCGCCTCCCTCAAGGGCATCCAGCCCACCTCGC
ACAGGGAAAACAGCTCCGAGAAGAAGGTGCAGGAGTACTTCCGCACCATC
CGGCTGCTCTTCAAGAGGGTGCGCATCATCTACGAGAAGTGCAACGACGC
CGGAATGGATTACATGAGCGCCGAGAGTCTGATTCCCTACCGCGATGAGC
CGGAACCGAGAATCGAGCCCTCGCTGTGCGATGAGTACCGGAAAGTCCTG
CAGGAGAACCATGAACTCATAAAGACCGTCAAGCT

BO06806.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17183-PA 957 MED30-RA 1..869 17..885 4320 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
MED30-RA 1103 CG17183-RA 80..948 17..885 4330 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 653142..654010 885..17 4330 99.9 Minus
Blast to na_te.dros performed 2015-02-12 23:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..7112 130..505 159 53.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2674 120..465 144 53.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2682 115..440 132 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2601..2958 116..458 132 53.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2742..2947 110..314 125 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6793 116..175 119 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2795..2852 148..208 117 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6710..6882 137..309 117 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6802..6846 130..174 108 71.1 Plus

BO06806.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:04 Download gff for BO06806.5prime
Subject Subject Range Query Range Percent Splice Strand
MED30-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:23 Download gff for BO06806.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17183-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:19:55 Download gff for BO06806.5prime
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 80..948 17..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:18:09 Download gff for BO06806.5prime
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 80..948 17..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:18:09 Download gff for BO06806.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 653142..654010 17..885 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:19:55 Download gff for BO06806.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 653142..654010 17..885 99   Minus

BO06806.complete Sequence

988 bp (988 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630539

> BO06806.complete
GAAGTTATCAGTCGACATGTGGAAATACGGTCAAAACCAGGGTAATCAGG
GACCATCGAGCGGCGGCGGAGGAGGCGGGGGCCCCAACATGATGCCGATG
GGTGGATTTGGCATGCAGCACGGCAATATGCAGCAAATGCACATGTCGCC
TCAACATCAACAGCAGCAACAACAAATGGGCATGATGGGCGGCCCGGGTA
GCATGCAGATGAATCCCCAAGGACCTGGAGGTCCTGGCGGCCTGATGCCC
GGCATGTCTCCGCAGCACCAGATGCAGCAACAGCAGCAGCAGCAGATGAT
GCAGCAGCAAATGATGGTGCCCCAACAAGGAGTGGGCGTCGGAGTGGGAA
TGGGCGGTGGTGTGGGAATGGGCGGAGGGGGAGTGGTTCCACAGCAGCAG
CAACAGCAGCCCCAACAAAACATGCCCCAGCAGAACATTCCCCAACAGCA
ACAGCAACTCAATCCGGTCGCAGGAATTCCACCCGGTGGAGCCGGGGGCA
GCAACAATATGCTGGCTATCTCGCAGCAAAATCCTCACAAGGAGATTAAC
ATTGTGCAGCTGTCCCGTCTCGGTCAGGAAACGGTGCAGGATATCGCCTC
GCGCTTCCAGGAGGTCTTCGCCTCCCTCAAGGGCATCCAGCCCACCTCGC
ACAGGGAAAACAGCTCCGAGAAGAAGGTGCAGGAGTACTTCCGCACCATC
CGGCTGCTCTTCAAGAGGGTGCGCATCATCTACGAGAAGTGCAACGACGC
CGGAATGGATTACATGAGCGCCGAGAGTCTGATTCCCTACCGCGATGAGC
CGGAACCGAGAATCGAGCCCTCGCTGTGCGATGAGTACCGGAAAGTCCTG
CAGGAGAACCATGAACTCATAGAGACCGTCAAGCTGAAGAACAGGCAGCT
ACGCGAGATCATCGATCGGACACGCATCATCATCTGGGAGATCAACACCA
TGCTGGCCATGCGGCGCTCAGCAAGCTTTCTAGACCAT

BO06806.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
MED30-RA 957 CG17183-PA 1..954 17..970 4770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
MED30-RA 1103 CG17183-RA 80..1033 17..970 4770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 653057..654010 970..17 4770 100 Minus
Blast to na_te.dros performed 2014-11-27 08:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..7112 130..505 159 53.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2674 120..465 144 53.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2682 115..440 132 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2601..2958 116..458 132 53.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2742..2947 110..314 125 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6793 116..175 119 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2795..2852 148..208 117 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6710..6882 137..309 117 55.9 Plus

BO06806.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:12 Download gff for BO06806.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 1..957 17..971 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:28 Download gff for BO06806.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 189..1147 17..976 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:59 Download gff for BO06806.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 80..1033 17..972 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:12 Download gff for BO06806.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 189..1147 17..976 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:51 Download gff for BO06806.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 80..1033 17..972 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:51 Download gff for BO06806.complete
Subject Subject Range Query Range Percent Splice Strand
3L 653055..654010 17..972 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:59 Download gff for BO06806.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 653055..654010 17..972 99   Minus

BO06806.pep Sequence

Translation from 16 to 988

> BO06806.pep
MWKYGQNQGNQGPSSGGGGGGGPNMMPMGGFGMQHGNMQQMHMSPQHQQQ
QQQMGMMGGPGSMQMNPQGPGGPGGLMPGMSPQHQMQQQQQQQMMQQQMM
VPQQGVGVGVGMGGGVGMGGGGVVPQQQQQQPQQNMPQQNIPQQQQQLNP
VAGIPPGGAGGSNNMLAISQQNPHKEINIVQLSRLGQETVQDIASRFQEV
FASLKGIQPTSHRENSSEKKVQEYFRTIRLLFKRVRIIYEKCNDAGMDYM
SAESLIPYRDEPEPRIEPSLCDEYRKVLQENHELIETVKLKNRQLREIID
RTRIIIWEINTMLAMRRSASFLDH

BO06806.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
MED30-PA 318 CG17183-PA 1..318 1..318 1689 100 Plus
mam-PD 1594 CG8118-PD 574..756 5..188 199 36.9 Plus
mam-PB 1594 CG8118-PB 574..756 5..188 199 36.9 Plus
mam-PA 1594 CG8118-PA 574..756 5..188 199 36.9 Plus
kto-PB 534 CG8491-PB 324..532 6..150 197 35.4 Plus
mam-PD 1594 CG8118-PD 1113..1300 12..161 175 36.2 Plus
mam-PB 1594 CG8118-PB 1113..1300 12..161 175 36.2 Plus
mam-PA 1594 CG8118-PA 1113..1300 12..161 175 36.2 Plus
mam-PD 1594 CG8118-PD 872..1032 9..149 170 35.8 Plus
mam-PB 1594 CG8118-PB 872..1032 9..149 170 35.8 Plus
mam-PA 1594 CG8118-PA 872..1032 9..149 170 35.8 Plus