Clone Sequence Records
BO06806.3prime Sequence
985 bp (856 high quality bases) assembled on 2005-12-03
> BO06806.3prime
ATGGTCTAGAAAGCTTGCTGAGCGCCGCATGGCCAGCATGGTGTTGATCT
CCCAGATGATGATGCGTGTCCGATCGATGATCTCGCGTAGCTGCCTGTTC
TTCAGCTTGACGGTCTCTATGAGTTCATGGTTCTCCTGCAGGACTTTCCG
GTACTCATCGCACAGCGAGGGCTCGATTCTCGGTTCCGGCTCATCGCGGT
AGGGAATCAGACTCTCGGCGCTCATGTAATCCATTCCGGCGTCGTTGCAC
TTCTCGTAGATGATGCGCACCCTCTTGAAGAGCAGCCGGATGGTGCGGAA
GTACTCCTGCACCTTCTTCTCGGAGCTGTTTTCCCTGTGCGAGGTGGGCT
GGATGCCCTTGAGGGAGGCGAAGACCTCCTGGAAGCGCGAGGCGATATCC
TGCACCGTTTCCTGACCGAGACGGGACAGCTGCACAATGTTAATCTCCTT
GTGAGGATTTTGCTGCGAGATAGCCAGCATATTGTTGCTGCCCCCGGCTC
CACCGGGTGGAATTCCTGCGACCGGATTGAGTTGCTGTTGCTGTTGGGGA
ATGTTCTGCTGGGGCATGTTTTGTTGGGGCTGCTGTTGCTGCTGCTGTGG
AACCACTCCCCCTCCGCCCATTCCCACACCACCGCCCATTCCCACTCCGA
CGCCCACTCCTTGTTGGGGCACCATCATTTGCTGCTGCATCATCTGCTGC
TGCTGCTGTTGCTGCATCTGGTGCTGCGGAGACATGCCGGGCATCAGGCC
GCCAGGACCTCCAGGTCCTTGGGGATTCATCTGCATGCTACCCGGGCCGC
CCATCATGCCCATTTGTTGTTGCTGCTGTTGATGTTGAGGCGACATGTGC
ATTTGCTGCATATTGCCGTGCTGCATGCCAAATCCACCCATCGGCATCAT
GTTGGGGGCCCCGCCTCCTCCGCCGCGCTCGATGGTCCCTGATTACCCTG
GTTTTGACCGTATTTCCACATGTCGACTGATAACT
BO06806.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17183-PA | 957 | MED30-RA | 47..954 | 926..19 | 4515 | 99.8 | Minus |
CG17183-PA | 957 | MED30-RA | 1..46 | 971..926 | 230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:23:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED30-RA | 1103 | CG17183-RA | 80..1033 | 971..19 | 4730 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 653057..654010 | 19..971 | 4705 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-11 03:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..7112 | 859..484 | 159 | 53.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2674 | 869..524 | 144 | 53.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2682 | 874..549 | 132 | 54.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2958 | 873..531 | 132 | 53.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2742..2947 | 879..675 | 125 | 55.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6793 | 873..814 | 119 | 70.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2795..2852 | 841..781 | 117 | 70.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6882 | 852..680 | 117 | 55.9 | Minus |
BO06806.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:03 Download gff for
BO06806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-PA | 1..957 | 18..971 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:21 Download gff for
BO06806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17183-PA | 1..957 | 18..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:54:08 Download gff for
BO06806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 80..1038 | 13..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:40:22 Download gff for
BO06806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 80..1038 | 13..971 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:22 Download gff for
BO06806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 653052..654010 | 13..971 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:54:08 Download gff for
BO06806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 653052..654010 | 13..971 | 99 | | Plus |
BO06806.5prime Sequence
885 bp (850 high quality bases) assembled on 2005-12-03
> BO06806.5prime
GAAGTTATCAGTCGACATGTGGAAATACGGTCAAAACCAGGGTAATCAGG
GACCATCGAGCGGCGGCGGAGGAGGCGGGGGCCCCAACATGATGCCGATG
GGTGGATTTGGCATGCAGCACGGCAATATGCAGCAAATGCACATGTCGCC
TCAACATCAACAGCAGCAACAACAAATGGGCATGATGGGCGGCCCGGGTA
GCATGCAGATGAATCCCCAAGGACCTGGAGGTCCTGGCGGCCTGATGCCC
GGCATGTCTCCGCAGCACCAGATGCAGCAACAGCAGCAGCAGCAGATGAT
GCAGCAGCAAATGATGGTGCCCCAACAAGGAGTGGGCGTCGGAGTGGGAA
TGGGCGGTGGTGTGGGAATGGGCGGAGGGGGAGTGGTTCCACAGCAGCAG
CAACAGCAGCCCCAACAAAACATGCCCCAGCAGAACATTCCCCAACAGCA
ACAGCAACTCAATCCGGTCGCAGGAATTCCACCCGGTGGAGCCGGGGGCA
GCAACAATATGCTGGCTATCTCGCAGCAAAATCCTCACAAGGAGATTAAC
ATTGTGCAGCTGTCCCGTCTCGGTCAGGAAACGGTGCAGGATATCGCCTC
GCGCTTCCAGGAGGTCTTCGCCTCCCTCAAGGGCATCCAGCCCACCTCGC
ACAGGGAAAACAGCTCCGAGAAGAAGGTGCAGGAGTACTTCCGCACCATC
CGGCTGCTCTTCAAGAGGGTGCGCATCATCTACGAGAAGTGCAACGACGC
CGGAATGGATTACATGAGCGCCGAGAGTCTGATTCCCTACCGCGATGAGC
CGGAACCGAGAATCGAGCCCTCGCTGTGCGATGAGTACCGGAAAGTCCTG
CAGGAGAACCATGAACTCATAAAGACCGTCAAGCT
BO06806.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17183-PA | 957 | MED30-RA | 1..869 | 17..885 | 4320 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED30-RA | 1103 | CG17183-RA | 80..948 | 17..885 | 4330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 653142..654010 | 885..17 | 4330 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 23:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..7112 | 130..505 | 159 | 53.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2674 | 120..465 | 144 | 53.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2682 | 115..440 | 132 | 54.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2958 | 116..458 | 132 | 53.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2742..2947 | 110..314 | 125 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6793 | 116..175 | 119 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2795..2852 | 148..208 | 117 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6882 | 137..309 | 117 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6846 | 130..174 | 108 | 71.1 | Plus |
BO06806.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:04 Download gff for
BO06806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:23 Download gff for
BO06806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17183-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:19:55 Download gff for
BO06806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 80..948 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:18:09 Download gff for
BO06806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 80..948 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:18:09 Download gff for
BO06806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 653142..654010 | 17..885 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:19:55 Download gff for
BO06806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 653142..654010 | 17..885 | 99 | | Minus |
BO06806.complete Sequence
988 bp (988 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630539
> BO06806.complete
GAAGTTATCAGTCGACATGTGGAAATACGGTCAAAACCAGGGTAATCAGG
GACCATCGAGCGGCGGCGGAGGAGGCGGGGGCCCCAACATGATGCCGATG
GGTGGATTTGGCATGCAGCACGGCAATATGCAGCAAATGCACATGTCGCC
TCAACATCAACAGCAGCAACAACAAATGGGCATGATGGGCGGCCCGGGTA
GCATGCAGATGAATCCCCAAGGACCTGGAGGTCCTGGCGGCCTGATGCCC
GGCATGTCTCCGCAGCACCAGATGCAGCAACAGCAGCAGCAGCAGATGAT
GCAGCAGCAAATGATGGTGCCCCAACAAGGAGTGGGCGTCGGAGTGGGAA
TGGGCGGTGGTGTGGGAATGGGCGGAGGGGGAGTGGTTCCACAGCAGCAG
CAACAGCAGCCCCAACAAAACATGCCCCAGCAGAACATTCCCCAACAGCA
ACAGCAACTCAATCCGGTCGCAGGAATTCCACCCGGTGGAGCCGGGGGCA
GCAACAATATGCTGGCTATCTCGCAGCAAAATCCTCACAAGGAGATTAAC
ATTGTGCAGCTGTCCCGTCTCGGTCAGGAAACGGTGCAGGATATCGCCTC
GCGCTTCCAGGAGGTCTTCGCCTCCCTCAAGGGCATCCAGCCCACCTCGC
ACAGGGAAAACAGCTCCGAGAAGAAGGTGCAGGAGTACTTCCGCACCATC
CGGCTGCTCTTCAAGAGGGTGCGCATCATCTACGAGAAGTGCAACGACGC
CGGAATGGATTACATGAGCGCCGAGAGTCTGATTCCCTACCGCGATGAGC
CGGAACCGAGAATCGAGCCCTCGCTGTGCGATGAGTACCGGAAAGTCCTG
CAGGAGAACCATGAACTCATAGAGACCGTCAAGCTGAAGAACAGGCAGCT
ACGCGAGATCATCGATCGGACACGCATCATCATCTGGGAGATCAACACCA
TGCTGGCCATGCGGCGCTCAGCAAGCTTTCTAGACCAT
BO06806.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED30-RA | 957 | CG17183-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:21:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED30-RA | 1103 | CG17183-RA | 80..1033 | 17..970 | 4770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 653057..654010 | 970..17 | 4770 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..7112 | 130..505 | 159 | 53.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2674 | 120..465 | 144 | 53.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2682 | 115..440 | 132 | 54.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2958 | 116..458 | 132 | 53.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2742..2947 | 110..314 | 125 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6793 | 116..175 | 119 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2795..2852 | 148..208 | 117 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6882 | 137..309 | 117 | 55.9 | Plus |
BO06806.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:12 Download gff for
BO06806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 1..957 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:28 Download gff for
BO06806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 189..1147 | 17..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:59 Download gff for
BO06806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 80..1033 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:12 Download gff for
BO06806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 189..1147 | 17..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:51 Download gff for
BO06806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED30-RA | 80..1033 | 17..972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:51 Download gff for
BO06806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 653055..654010 | 17..972 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:59 Download gff for
BO06806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 653055..654010 | 17..972 | 99 | | Minus |
BO06806.pep Sequence
Translation from 16 to 988
> BO06806.pep
MWKYGQNQGNQGPSSGGGGGGGPNMMPMGGFGMQHGNMQQMHMSPQHQQQ
QQQMGMMGGPGSMQMNPQGPGGPGGLMPGMSPQHQMQQQQQQQMMQQQMM
VPQQGVGVGVGMGGGVGMGGGGVVPQQQQQQPQQNMPQQNIPQQQQQLNP
VAGIPPGGAGGSNNMLAISQQNPHKEINIVQLSRLGQETVQDIASRFQEV
FASLKGIQPTSHRENSSEKKVQEYFRTIRLLFKRVRIIYEKCNDAGMDYM
SAESLIPYRDEPEPRIEPSLCDEYRKVLQENHELIETVKLKNRQLREIID
RTRIIIWEINTMLAMRRSASFLDH
BO06806.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED30-PA | 318 | CG17183-PA | 1..318 | 1..318 | 1689 | 100 | Plus |
mam-PD | 1594 | CG8118-PD | 574..756 | 5..188 | 199 | 36.9 | Plus |
mam-PB | 1594 | CG8118-PB | 574..756 | 5..188 | 199 | 36.9 | Plus |
mam-PA | 1594 | CG8118-PA | 574..756 | 5..188 | 199 | 36.9 | Plus |
kto-PB | 534 | CG8491-PB | 324..532 | 6..150 | 197 | 35.4 | Plus |
mam-PD | 1594 | CG8118-PD | 1113..1300 | 12..161 | 175 | 36.2 | Plus |
mam-PB | 1594 | CG8118-PB | 1113..1300 | 12..161 | 175 | 36.2 | Plus |
mam-PA | 1594 | CG8118-PA | 1113..1300 | 12..161 | 175 | 36.2 | Plus |
mam-PD | 1594 | CG8118-PD | 872..1032 | 9..149 | 170 | 35.8 | Plus |
mam-PB | 1594 | CG8118-PB | 872..1032 | 9..149 | 170 | 35.8 | Plus |
mam-PA | 1594 | CG8118-PA | 872..1032 | 9..149 | 170 | 35.8 | Plus |