Clone Sequence Records
BO06807.3prime Sequence
671 bp (670 high quality bases) assembled on 2005-12-03
> BO06807.3prime
ATGGTCTAGAAAGCTTGCGCAGCAGCCACTGTTTGCTGCTCCAGCTGCTC
CTCCGGCTCCTGGGAGCGACGGGTTTGTGGGGGAGTGCTGTTGGCCGATC
TTAATGCCGTTTGCCTCATTGTTGATGTCGAAGACACCTTCCTGGATCTT
CTCGTAAATCTCTTTGGCCGTATTTATGAACGCCTCCTCTACGTTGGCAG
CTGTGCGCGCAGAAGTCTCCATGAAGACCAGTCCGTGCTCGCGGGCGAAG
GCCTCGCCCTCCTCTTTCTTCACCTCACGCCGCGAATCCAAATCGCTCTT
GTTGCCTATCAGCATAATGACCATGTTCGAGTTCGAGTGCTGACGCGCAT
CCTCCAGCCAGGTGGTCAGGTGGTTGAAGGTCTCCCGTCGCGTGATGTCG
TACACCAGCAAGGCGCCAGCAGCTCCGCGGTAATAAGAGCGTGTGATAGA
TCTGAAAGCCTCCTGCCCAGCCGTGTCCCAGATTTGAAGCTTGATCTGCT
TGCCGTCGATGGTGATCATGCGTGCTCCGAACTCCACGCCAATGGTCAGG
TCGTGCACCGGCTGGAATCGCTTGTCCGTGAACTGGAGCAGCAGACAGGA
CTTGCCCACGCCTGTGTCTCCGATAATGATGTATTTGAACAAGTACGCGT
AGGACATGTCGACTGATAACT
BO06807.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3269-PA | 642 | Rab2-RA | 1..639 | 657..19 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab2-RB | 1087 | CG3269-RB | 144..784 | 659..19 | 3205 | 100 | Minus |
Rab2-RA | 1712 | CG3269-RA | 144..784 | 659..19 | 3205 | 100 | Minus |
Rab14-RD | 878 | CG4212-RD | 105..343 | 636..398 | 310 | 76 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6698047..6698386 | 453..114 | 1700 | 100 | Minus |
2R | 25286936 | 2R | 6697413..6697575 | 614..452 | 815 | 100 | Minus |
2R | 25286936 | 2R | 6698444..6698541 | 116..19 | 490 | 100 | Minus |
2R | 25286936 | 2R | 6696882..6696940 | 659..601 | 250 | 94.9 | Minus |
2L | 23513712 | 2L | 14357540..14357688 | 546..398 | 250 | 77.9 | Minus |
2L | 23513712 | 2L | 14357385..14357450 | 636..571 | 180 | 84.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:47:46 has no hits.
BO06807.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:05 Download gff for
BO06807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-PA | 1..642 | 18..657 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:24 Download gff for
BO06807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3269-PA | 1..642 | 18..657 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:47 Download gff for
BO06807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 144..784 | 19..659 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:44 Download gff for
BO06807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 144..784 | 19..659 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:44 Download gff for
BO06807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6696882..6696929 | 612..659 | 100 | -> | Minus |
2R | 6697416..6697575 | 452..611 | 100 | -> | Minus |
2R | 6698049..6698385 | 115..451 | 100 | -> | Minus |
2R | 6698446..6698541 | 19..114 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:47 Download gff for
BO06807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2584921..2585080 | 452..611 | 100 | -> | Minus |
arm_2R | 2584387..2584434 | 612..659 | 100 | -> | Minus |
arm_2R | 2585554..2585890 | 115..451 | 100 | -> | Minus |
arm_2R | 2585951..2586046 | 19..114 | 100 | | Minus |
BO06807.5prime Sequence
671 bp (670 high quality bases) assembled on 2005-12-03
> BO06807.5prime
GAAGTTATCAGTCGACATGTCCTACGCGTACTTGTTCAAATACATCATTA
TCGGAGACACAGGCGTGGGCAAGTCCTGTCTGCTGCTCCAGTTCACGGAC
AAGCGATTCCAGCCGGTGCACGACCTGACCATTGGCGTGGAGTTCGGAGC
ACGCATGATCACCATCGACGGCAAGCAGATCAAGCTTCAAATCTGGGACA
CGGCTGGGCAGGAGGCTTTCAGATCTATCACACGCTCTTATTACCGCGGA
GCTGCTGGCGCCTTGCTGGTGTACGACATCACGCGACGGGAGACCTTCAA
CCACCTGACCACCTGGCTGGAGGATGCGCGTCAGCACTCGAACTCGAACA
TGGTCATTATGCTGATAGGCAACAAGAGCGATTTGGATTCGCGGCGTGAG
GTGAAGAAAGAGGAGGGCGAGGCCTTCGCCCGCGAGCACGGACTGGTCTT
CATGGAGACTTCTGCGCGCACAGCTGCCAACGTAGAGGAGGCGTTCATAA
ATACGGCCAAAGAGATTTACGAGAAGATCCAGGAAGGTGTCTTCGACATC
AACAATGAGGCAAACGGCATTAAGATCGGCCAACAGCACTCCCCCACAAA
CCCGTCGCTCCCAGGAGCCGGAGGAGCAGCTGGAGCAGCAAACAGTGGCT
GCTGCGCAAGCTTTCTAGACC
BO06807.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3269-PA | 642 | Rab2-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab2-RB | 1087 | CG3269-RB | 144..784 | 15..655 | 3205 | 100 | Plus |
Rab2-RA | 1712 | CG3269-RA | 144..784 | 15..655 | 3205 | 100 | Plus |
Rab14-RD | 878 | CG4212-RD | 105..343 | 38..276 | 310 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6698047..6698386 | 221..560 | 1700 | 100 | Plus |
2R | 25286936 | 2R | 6697413..6697575 | 60..222 | 815 | 100 | Plus |
2R | 25286936 | 2R | 6698444..6698541 | 558..655 | 490 | 100 | Plus |
2R | 25286936 | 2R | 6696882..6696940 | 15..73 | 250 | 94.9 | Plus |
2L | 23513712 | 2L | 14357540..14357688 | 128..276 | 250 | 77.9 | Plus |
2L | 23513712 | 2L | 14357385..14357450 | 38..103 | 180 | 84.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:09:49 has no hits.
BO06807.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:06 Download gff for
BO06807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-PA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:25 Download gff for
BO06807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3269-PA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:18 Download gff for
BO06807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 144..784 | 15..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:37:14 Download gff for
BO06807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 144..784 | 15..655 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:37:14 Download gff for
BO06807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6697416..6697575 | 63..222 | 100 | -> | Plus |
2R | 6696882..6696929 | 15..62 | 100 | -> | Plus |
2R | 6698049..6698385 | 223..559 | 100 | -> | Plus |
2R | 6698446..6698541 | 560..655 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:18 Download gff for
BO06807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2584387..2584434 | 15..62 | 100 | -> | Plus |
arm_2R | 2584921..2585080 | 63..222 | 100 | -> | Plus |
arm_2R | 2585951..2586046 | 560..655 | 100 | | Plus |
arm_2R | 2585554..2585890 | 223..559 | 100 | -> | Plus |
BO06807.complete Sequence
673 bp (673 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630540
> BO06807.complete
GAAGTTATCAGTCGACATGTCCTACGCGTACTTGTTCAAATACATCATTA
TCGGAGACACAGGCGTGGGCAAGTCCTGTCTGCTGCTCCAGTTCACGGAC
AAGCGATTCCAGCCGGTGCACGACCTGACCATTGGCGTGGAGTTCGGAGC
ACGCATGATCACCATCGACGGCAAGCAGATCAAGCTTCAAATCTGGGACA
CGGCTGGGCAGGAGGCTTTCAGATCTATCACACGCTCTTATTACCGCGGA
GCTGCTGGCGCCTTGCTGGTGTACGACATCACGCGACGGGAGACCTTCAA
CCACCTGACCACCTGGCTGGAGGATGCGCGTCAGCACTCGAACTCGAACA
TGGTCATTATGCTGATAGGCAACAAGAGCGATTTGGATTCGCGGCGTGAG
GTGAAGAAAGAGGAGGGCGAGGCCTTCGCCCGCGAGCACGGACTGGTCTT
CATGGAGACTTCTGCGCGCACAGCTGCCAACGTAGAGGAGGCGTTCATAA
ATACGGCCAAAGAGATTTACGAGAAGATCCAGGAAGGTGTCTTCGACATC
AACAATGAGGCAAACGGCATTAAGATCGGCCAACAGCACTCCCCCACAAA
CCCGTCGCTCCCAGGAGCCGGAGGAGCAGCTGGAGCAGCAAACAGTGGCT
GCTGCGCAAGCTTTCTAGACCAT
BO06807.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab2-RB | 642 | CG3269-PB | 1..639 | 17..655 | 3195 | 100 | Plus |
Rab2-RA | 642 | CG3269-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
Rab14-RD | 648 | CG4212-PD | 37..275 | 38..276 | 295 | 74.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab2-RB | 1087 | CG3269-RB | 144..784 | 15..655 | 3205 | 100 | Plus |
Rab2-RA | 1712 | CG3269-RA | 144..784 | 15..655 | 3205 | 100 | Plus |
Rab14-RD | 878 | CG4212-RD | 105..343 | 38..276 | 295 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6698047..6698386 | 221..560 | 1700 | 100 | Plus |
2R | 25286936 | 2R | 6697413..6697575 | 60..222 | 815 | 100 | Plus |
2R | 25286936 | 2R | 6698444..6698541 | 558..655 | 490 | 100 | Plus |
2R | 25286936 | 2R | 6696882..6696940 | 15..73 | 250 | 94.9 | Plus |
2L | 23513712 | 2L | 14357540..14357688 | 128..276 | 250 | 77.9 | Plus |
2L | 23513712 | 2L | 14357385..14357450 | 38..103 | 180 | 84.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:09:07 has no hits.
BO06807.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:32 Download gff for
BO06807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:42 Download gff for
BO06807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 161..801 | 15..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:18 Download gff for
BO06807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 146..784 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:33 Download gff for
BO06807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 161..801 | 15..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:19 Download gff for
BO06807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab2-RA | 146..784 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:19 Download gff for
BO06807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6696884..6696929 | 17..62 | 100 | -> | Plus |
2R | 6697416..6697575 | 63..222 | 100 | -> | Plus |
2R | 6698049..6698385 | 223..559 | 100 | -> | Plus |
2R | 6698446..6698541 | 560..657 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:18 Download gff for
BO06807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2585951..2586046 | 560..657 | 97 | | Plus |
arm_2R | 2584389..2584434 | 17..62 | 100 | -> | Plus |
arm_2R | 2584921..2585080 | 63..222 | 100 | -> | Plus |
arm_2R | 2585554..2585890 | 223..559 | 100 | -> | Plus |
BO06807.pep Sequence
Translation from 16 to 673
> BO06807.pep
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI
DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW
LEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGEAFAREHGLVFMETSA
RTAANVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGQQHSPTNPSLPG
AGGAAGAANSGCCASFLDH
BO06807.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab2-PB | 213 | CG3269-PB | 1..213 | 1..213 | 1103 | 100 | Plus |
Rab2-PA | 213 | CG3269-PA | 1..213 | 1..213 | 1103 | 100 | Plus |
Rab14-PD | 215 | CG4212-PD | 7..213 | 2..212 | 648 | 60.2 | Plus |
Rab14-PA | 215 | CG4212-PA | 7..213 | 2..212 | 648 | 60.2 | Plus |
Rab14-PB | 239 | CG4212-PB | 31..237 | 2..212 | 648 | 60.2 | Plus |