Clone Sequence Records
BO06808.3prime Sequence
635 bp (634 high quality bases) assembled on 2005-12-03
> BO06808.3prime
ATGGTCTAGAAAGCTTGCTTGCAGCTTGAGGAGAACGTGGCCGGCGTGCC
GTTTGTACAGGACCAGCGACATGTTGACCAGAAAGGGGGCGGCCAGCCAA
AACAGCCGTGTGCCGATGCCCGTGTCCTCGCGATGGAAGATCCCGGATGC
AGCTCCTCGACCCGTATTACAAAAGGACTCCTCGCAGCAGGAAGTGCAGG
AATAGAGCTTGGTCCGCTCGCCAATGATGATGCAGCCGGGCTCACAGTTG
GCAGTACATCGCCGGTCCAGGGACCACATCTTGGGCGAACTGGTGGAGTT
CTCCGTGCTGGTGGTGTACGAGAACCGCTTGACCATGCAGATGAACTCCT
CGCCCTGGCACTTTTTCATCAGTGCGGAATCGTTCCGGACCGCCACATCC
ACGCAGGCCTCCCCATCATCCATCGTGTGGCAGGCAAAGCACCACAGTTT
GTTCACCCTTTCGATGGCTGCCGCCGTGCGGTGAATGTGCCCGCTGGTCA
GCGAGGTACTGGGTCCGGGTCCGGGTGAACTGGTGCCTGTCACATTATTC
ACACAGGCTGTGAACACGATGGACGAACTGGTCAGCAGGAAGTAGAGCAA
CGTGACGAAGGGCCGGATCATGTCGACTGATAACT
BO06808.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3955-PA | 606 | CG3955-RA | 1..603 | 621..19 | 3015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3955-RA | 997 | CG3955-RA | 115..717 | 621..19 | 3015 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13128195..13128510 | 19..334 | 1580 | 100 | Plus |
2R | 25286936 | 2R | 13128577..13128788 | 332..543 | 1060 | 100 | Plus |
2R | 25286936 | 2R | 13128860..13128938 | 543..621 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:12:09 has no hits.
BO06808.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:07 Download gff for
BO06808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3955-PA | 1..606 | 18..621 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:27 Download gff for
BO06808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3955-PA | 1..606 | 18..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:07 Download gff for
BO06808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3955-RA | 108..726 | 9..629 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:39 Download gff for
BO06808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3955-RA | 108..726 | 9..629 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:39 Download gff for
BO06808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13128186..13128509 | 9..333 | 98 | <- | Plus |
2R | 13128579..13128787 | 334..542 | 100 | <- | Plus |
2R | 13128860..13128942 | 543..629 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:07 Download gff for
BO06808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9016084..9016292 | 334..542 | 100 | <- | Plus |
arm_2R | 9016365..9016447 | 543..629 | 95 | | Plus |
arm_2R | 9015691..9016014 | 9..333 | 98 | <- | Plus |
BO06808.5prime Sequence
635 bp (634 high quality bases) assembled on 2005-12-03
> BO06808.5prime
GAAGTTATCAGTCGACATGATCCGGCCCTTCGTCACGTTGCTCTACTTCC
TGCTGACCAGTTCGTCCATCGTGTTCACAGCCTGTGTGAATAATGTGACA
GGCACCAGTTCACCCGGACCCGGACCCAGTACCTCGCTGACCAGCGGGCA
CATTCACCGCACGGCGGCAGCCATCGAAAGGGTGAACAAACTGTGGTGCT
TTGCCTGCCACACGATGGATGATGGGGAGGCCTGCGTGGATGTGGCGGTC
CGGAACGATTCCGCACTGATGAAAAAGTGCCAGGGCGAGGAGTTCATCTG
CATGGTCAAGCGGTTCTCGTACACCACCAGCACGGAGAACTCCACCAGTT
CGCCCAAGATGTGGTCCCTGGACCGGCGATGTACTGCCAACTGTGAGCCC
GGCTGCATCATCATTGGCGAGCGGACCAAGCTCTATTCCTGCACTTCCTG
CTGCGAGGAGTCCTTTTGTAATACGGGTCGAGGAGCTGCATCCGGGATCT
TCCATCGCGAGGACACGGGCATCGGCACACGGCTGTTTTGGCTGGCCGCC
CCCTTTCTGGTCAACATGTCGCTGGTCCTGTACAAACGGCACGCCGGCCA
CGTTCTCCTCAAGCTGCAAGCAAGCTTTCTAGACC
BO06808.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3955-PA | 606 | CG3955-RA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3955-RA | 997 | CG3955-RA | 115..717 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13128195..13128510 | 619..304 | 1580 | 100 | Minus |
2R | 25286936 | 2R | 13128577..13128788 | 306..95 | 1060 | 100 | Minus |
2R | 25286936 | 2R | 13128860..13128938 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:50:39 has no hits.
BO06808.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:08 Download gff for
BO06808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3955-PA | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:28 Download gff for
BO06808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3955-PA | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:16 Download gff for
BO06808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3955-RA | 108..726 | 9..629 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:50 Download gff for
BO06808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3955-RA | 108..726 | 9..629 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:50 Download gff for
BO06808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13128860..13128942 | 9..95 | 95 | | Minus |
2R | 13128186..13128509 | 305..629 | 98 | <- | Minus |
2R | 13128579..13128787 | 96..304 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:16 Download gff for
BO06808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9015691..9016014 | 305..629 | 98 | <- | Minus |
arm_2R | 9016084..9016292 | 96..304 | 100 | <- | Minus |
arm_2R | 9016365..9016447 | 9..95 | 95 | | Minus |
BO06808.complete Sequence
637 bp (637 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630541
> BO06808.complete
GAAGTTATCAGTCGACATGATCCGGCCCTTCGTCACGTTGCTCTACTTCC
TGCTGACCAGTTCGTCCATCGTGTTCACAGCCTGTGTGAATAATGTGACA
GGCACCAGTTCACCCGGACCCGGACCCAGTACCTCGCTGACCAGCGGGCA
CATTCACCGCACGGCGGCAGCCATCGAAAGGGTGAACAAACTGTGGTGCT
TTGCCTGCCACACGATGGATGATGGGGAGGCCTGCGTGGATGTGGCGGTC
CGGAACGATTCCGCACTGATGAAAAAGTGCCAGGGCGAGGAGTTCATCTG
CATGGTCAAGCGGTTCTCGTACACCACCAGCACGGAGAACTCCACCAGTT
CGCCCAAGATGTGGTCCCTGGACCGGCGATGTACTGCCAACTGTGAGCCC
GGCTGCATCATCATTGGCGAGCGGACCAAGCTCTATTCCTGCACTTCCTG
CTGCGAGGAGTCCTTTTGTAATACGGGTCGAGGAGCTGCATCCGGGATCT
TCCATCGCGAGGACACGGGCATCGGCACACGGCTGTTTTGGCTGGCCGCC
CCCTTTCTGGTCAACATGTCGCTGGTCCTGTACAAACGGCACGCCGGCCA
CGTTCTCCTCAAGCTGCAAGCAAGCTTTCTAGACCAT
BO06808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3955-RA | 606 | CG3955-PA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3955-RA | 997 | CG3955-RA | 115..717 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13128195..13128510 | 619..304 | 1580 | 100 | Minus |
2R | 25286936 | 2R | 13128577..13128788 | 306..95 | 1060 | 100 | Minus |
2R | 25286936 | 2R | 13128860..13128938 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:26:56 has no hits.
BO06808.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:53 Download gff for
BO06808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3955-RA | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:03 Download gff for
BO06808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3955-RA | 110..728 | 9..629 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:57 Download gff for
BO06808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3955-RA | 115..717 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:53 Download gff for
BO06808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3955-RA | 110..728 | 9..629 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:00 Download gff for
BO06808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3955-RA | 115..717 | 17..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:00 Download gff for
BO06808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13128193..13128509 | 305..621 | 99 | <- | Minus |
2R | 13128579..13128787 | 96..304 | 100 | <- | Minus |
2R | 13128860..13128938 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:57 Download gff for
BO06808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9015698..9016014 | 305..621 | 99 | <- | Minus |
arm_2R | 9016084..9016292 | 96..304 | 100 | <- | Minus |
arm_2R | 9016365..9016443 | 17..95 | 100 | | Minus |
BO06808.pep Sequence
Translation from 16 to 637
> BO06808.pep
MIRPFVTLLYFLLTSSSIVFTACVNNVTGTSSPGPGPSTSLTSGHIHRTA
AAIERVNKLWCFACHTMDDGEACVDVAVRNDSALMKKCQGEEFICMVKRF
SYTTSTENSTSSPKMWSLDRRCTANCEPGCIIIGERTKLYSCTSCCEESF
CNTGRGAASGIFHREDTGIGTRLFWLAAPFLVNMSLVLYKRHAGHVLLKL
QASFLDH
BO06808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3955-PA | 201 | CG3955-PA | 1..201 | 1..201 | 1080 | 100 | Plus |