Clone BO06808 Report

Search the DGRC for BO06808

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG3955-RA
Protein status:BO06808.pep: validated full length
Sequenced Size:637

Clone Sequence Records

BO06808.3prime Sequence

635 bp (634 high quality bases) assembled on 2005-12-03

> BO06808.3prime
ATGGTCTAGAAAGCTTGCTTGCAGCTTGAGGAGAACGTGGCCGGCGTGCC
GTTTGTACAGGACCAGCGACATGTTGACCAGAAAGGGGGCGGCCAGCCAA
AACAGCCGTGTGCCGATGCCCGTGTCCTCGCGATGGAAGATCCCGGATGC
AGCTCCTCGACCCGTATTACAAAAGGACTCCTCGCAGCAGGAAGTGCAGG
AATAGAGCTTGGTCCGCTCGCCAATGATGATGCAGCCGGGCTCACAGTTG
GCAGTACATCGCCGGTCCAGGGACCACATCTTGGGCGAACTGGTGGAGTT
CTCCGTGCTGGTGGTGTACGAGAACCGCTTGACCATGCAGATGAACTCCT
CGCCCTGGCACTTTTTCATCAGTGCGGAATCGTTCCGGACCGCCACATCC
ACGCAGGCCTCCCCATCATCCATCGTGTGGCAGGCAAAGCACCACAGTTT
GTTCACCCTTTCGATGGCTGCCGCCGTGCGGTGAATGTGCCCGCTGGTCA
GCGAGGTACTGGGTCCGGGTCCGGGTGAACTGGTGCCTGTCACATTATTC
ACACAGGCTGTGAACACGATGGACGAACTGGTCAGCAGGAAGTAGAGCAA
CGTGACGAAGGGCCGGATCATGTCGACTGATAACT

BO06808.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3955-PA 606 CG3955-RA 1..603 621..19 3015 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3955-RA 997 CG3955-RA 115..717 621..19 3015 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13128195..13128510 19..334 1580 100 Plus
2R 25286936 2R 13128577..13128788 332..543 1060 100 Plus
2R 25286936 2R 13128860..13128938 543..621 395 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:12:09 has no hits.

BO06808.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:07 Download gff for BO06808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-PA 1..606 18..621 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:27 Download gff for BO06808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-PA 1..606 18..621 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:07 Download gff for BO06808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 108..726 9..629 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:39 Download gff for BO06808.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 108..726 9..629 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:39 Download gff for BO06808.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13128186..13128509 9..333 98 <- Plus
2R 13128579..13128787 334..542 100 <- Plus
2R 13128860..13128942 543..629 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:07 Download gff for BO06808.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9016084..9016292 334..542 100 <- Plus
arm_2R 9016365..9016447 543..629 95   Plus
arm_2R 9015691..9016014 9..333 98 <- Plus

BO06808.5prime Sequence

635 bp (634 high quality bases) assembled on 2005-12-03

> BO06808.5prime
GAAGTTATCAGTCGACATGATCCGGCCCTTCGTCACGTTGCTCTACTTCC
TGCTGACCAGTTCGTCCATCGTGTTCACAGCCTGTGTGAATAATGTGACA
GGCACCAGTTCACCCGGACCCGGACCCAGTACCTCGCTGACCAGCGGGCA
CATTCACCGCACGGCGGCAGCCATCGAAAGGGTGAACAAACTGTGGTGCT
TTGCCTGCCACACGATGGATGATGGGGAGGCCTGCGTGGATGTGGCGGTC
CGGAACGATTCCGCACTGATGAAAAAGTGCCAGGGCGAGGAGTTCATCTG
CATGGTCAAGCGGTTCTCGTACACCACCAGCACGGAGAACTCCACCAGTT
CGCCCAAGATGTGGTCCCTGGACCGGCGATGTACTGCCAACTGTGAGCCC
GGCTGCATCATCATTGGCGAGCGGACCAAGCTCTATTCCTGCACTTCCTG
CTGCGAGGAGTCCTTTTGTAATACGGGTCGAGGAGCTGCATCCGGGATCT
TCCATCGCGAGGACACGGGCATCGGCACACGGCTGTTTTGGCTGGCCGCC
CCCTTTCTGGTCAACATGTCGCTGGTCCTGTACAAACGGCACGCCGGCCA
CGTTCTCCTCAAGCTGCAAGCAAGCTTTCTAGACC

BO06808.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3955-PA 606 CG3955-RA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3955-RA 997 CG3955-RA 115..717 17..619 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13128195..13128510 619..304 1580 100 Minus
2R 25286936 2R 13128577..13128788 306..95 1060 100 Minus
2R 25286936 2R 13128860..13128938 95..17 395 100 Minus
Blast to na_te.dros performed on 2015-02-12 09:50:39 has no hits.

BO06808.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:08 Download gff for BO06808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-PA 1..606 17..620 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:28 Download gff for BO06808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-PA 1..606 17..620 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:16 Download gff for BO06808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 108..726 9..629 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:50 Download gff for BO06808.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 108..726 9..629 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:50 Download gff for BO06808.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13128860..13128942 9..95 95   Minus
2R 13128186..13128509 305..629 98 <- Minus
2R 13128579..13128787 96..304 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:16 Download gff for BO06808.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9015691..9016014 305..629 98 <- Minus
arm_2R 9016084..9016292 96..304 100 <- Minus
arm_2R 9016365..9016447 9..95 95   Minus

BO06808.complete Sequence

637 bp (637 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630541

> BO06808.complete
GAAGTTATCAGTCGACATGATCCGGCCCTTCGTCACGTTGCTCTACTTCC
TGCTGACCAGTTCGTCCATCGTGTTCACAGCCTGTGTGAATAATGTGACA
GGCACCAGTTCACCCGGACCCGGACCCAGTACCTCGCTGACCAGCGGGCA
CATTCACCGCACGGCGGCAGCCATCGAAAGGGTGAACAAACTGTGGTGCT
TTGCCTGCCACACGATGGATGATGGGGAGGCCTGCGTGGATGTGGCGGTC
CGGAACGATTCCGCACTGATGAAAAAGTGCCAGGGCGAGGAGTTCATCTG
CATGGTCAAGCGGTTCTCGTACACCACCAGCACGGAGAACTCCACCAGTT
CGCCCAAGATGTGGTCCCTGGACCGGCGATGTACTGCCAACTGTGAGCCC
GGCTGCATCATCATTGGCGAGCGGACCAAGCTCTATTCCTGCACTTCCTG
CTGCGAGGAGTCCTTTTGTAATACGGGTCGAGGAGCTGCATCCGGGATCT
TCCATCGCGAGGACACGGGCATCGGCACACGGCTGTTTTGGCTGGCCGCC
CCCTTTCTGGTCAACATGTCGCTGGTCCTGTACAAACGGCACGCCGGCCA
CGTTCTCCTCAAGCTGCAAGCAAGCTTTCTAGACCAT

BO06808.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3955-RA 606 CG3955-PA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3955-RA 997 CG3955-RA 115..717 17..619 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13128195..13128510 619..304 1580 100 Minus
2R 25286936 2R 13128577..13128788 306..95 1060 100 Minus
2R 25286936 2R 13128860..13128938 95..17 395 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:26:56 has no hits.

BO06808.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:53 Download gff for BO06808.complete
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 1..606 17..620 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:03 Download gff for BO06808.complete
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 110..728 9..629 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:57 Download gff for BO06808.complete
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 115..717 17..621 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:53 Download gff for BO06808.complete
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 110..728 9..629 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:00 Download gff for BO06808.complete
Subject Subject Range Query Range Percent Splice Strand
CG3955-RA 115..717 17..621 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:00 Download gff for BO06808.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13128193..13128509 305..621 99 <- Minus
2R 13128579..13128787 96..304 100 <- Minus
2R 13128860..13128938 17..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:57 Download gff for BO06808.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9015698..9016014 305..621 99 <- Minus
arm_2R 9016084..9016292 96..304 100 <- Minus
arm_2R 9016365..9016443 17..95 100   Minus

BO06808.pep Sequence

Translation from 16 to 637

> BO06808.pep
MIRPFVTLLYFLLTSSSIVFTACVNNVTGTSSPGPGPSTSLTSGHIHRTA
AAIERVNKLWCFACHTMDDGEACVDVAVRNDSALMKKCQGEEFICMVKRF
SYTTSTENSTSSPKMWSLDRRCTANCEPGCIIIGERTKLYSCTSCCEESF
CNTGRGAASGIFHREDTGIGTRLFWLAAPFLVNMSLVLYKRHAGHVLLKL
QASFLDH

BO06808.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3955-PA 201 CG3955-PA 1..201 1..201 1080 100 Plus