Clone BO06811 Report

Search the DGRC for BO06811

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptPgam5-RA
Protein status:BO06811.pep: validated full length
Sequenced Size:901

Clone Sequence Records

BO06811.3prime Sequence

874 bp (862 high quality bases) assembled on 2005-12-03

> BO06811.3prime
ATGGTCTAGAAAGCTTGCAACCACGTTTTTGACGTCGCGCGGTATGCGAT
TGGTAAGCAGCTCGGCGGGCATAAAGCCGGAGTCGCCCAGGTACTTGATG
GACACGTTGCCGGATGGACTGATGGTCAGCCAGGTGATGGAAGCGTGATT
AATGTTAATCCGTAGCCAACCCTCGGCGGGGAACTGCAGGGCTCGGCAGA
CAAAGTAGCGGATCACGTTGCCGTGTCCCACGATCAGGGTATAGCTCTCC
TTCTCTTGGTCGGGATAGGCGCGGTGGAAGTATCGGCGAAAGCCGGCCTC
TATGCGCGATCCGTCGCGAAGGAACTGAGATGCCTCCGGCTTCCAGTGGC
CGACTGGCGGCTGGGGCGGAATAGGCGCTCCTTCACGCAGGAAGGCACAG
TTCACCACTTTCTCTTTTTCGAAATCGATCTGCTTGAGAATAATATCGGA
AGTCTCCTGGGCCCGCACCATTGTGGAGGCTACTACCTTGTCCCACTTGA
TGCCCAGCTCGCAGAGCCGTTTCCCAGTAAACTCCGCCTGCTTGCGGCCG
CGCTCCGTGAGATGATGCGTGTCATCCGAGTCACCCACGTCCAGATACTC
GCCATGCCGCACTAGGATAATGTGGCGCGCCTTCTTGGCCTTCGCCTTCT
CAAGCTCCGCGTTGTAGCGGTTCTCCTCCTCCGGCTGGCTGTTTCGCAGT
GGACGCACGAGGGCCCGTGGCTCCCGGCAATCCCAGTTGGTGTCCCAAAG
GGCCCACGGATCCACCGGCTTATCACTGTGCGTCCACGAGTTCTGCACGA
CCGTCTGCGGGTCCCGCAGCCGCTGTAGGTAGTAAGCCGCCAGTCCGGCT
CCTGTGCCGCACACGAAGCTAGTC

BO06811.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14816-PA 870 CG14816-RA 12..867 874..19 4280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-RA 1100 CG14816-RA 47..902 874..19 4280 100 Minus
Pgam5-RB 1097 CG14816-RB 47..899 874..19 4225 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1872973..1873519 328..874 2735 100 Plus
X 23542271 X 1872598..1872906 19..327 1545 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:45:01 has no hits.

BO06811.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:13 Download gff for BO06811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14816-PA 12..870 18..874 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:35 Download gff for BO06811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14816-PA 12..870 18..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:48 Download gff for BO06811.3prime
Subject Subject Range Query Range Percent Splice Strand
Pgam5-RA 47..906 13..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:43:22 Download gff for BO06811.3prime
Subject Subject Range Query Range Percent Splice Strand
Pgam5-RA 47..906 13..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:43:22 Download gff for BO06811.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1872594..1872906 13..327 99 <- Plus
X 1872973..1873519 328..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:48 Download gff for BO06811.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1766627..1766939 13..327 99 <- Plus
arm_X 1767006..1767552 328..874 100   Plus

BO06811.5prime Sequence

844 bp (789 high quality bases) assembled on 2005-12-03

> BO06811.5prime
GAAGTTATCAGTCGACATGCGAAAGTTGACTAGCTTCGTGTGCGGCACAG
GAGCCGGACTGGCGGCTTACTACCTACAGCGGCTGCGGGACCCGCAGACG
GTCGTGCAGAACTCGTGGACGCACAGTGATAAGCCGGTGGATCCGTGGGC
CCTTTGGGACACCAACTGGGATTGCCGGGAGCCACGGGCCCTCGTGCGTC
CACTGCGAAACAGCCAGCCGGAGGAGGAGAACCGCTACAACGCGGAGCTT
GAGAAGGCGAAGGCCAAGAAGGCGCGCCACATTATCCTAGTGCGGCATGG
CGAGTATCTGGACGTGGGTGACTCGGATGACACGCATCATCTCACGGAGC
GCGGCCGCAAGCAGGCGGAGTTTACTGGGAAACGGCTCTGCGAGCTGGGC
ATCAAGTGGGACAAGGTAGTAGCCTCCACAATGGTGCGGGCCCAGGAGAC
TTCCGATATTATTCTCAAGCAGATCGATTTCGAAAAAGAGAAAGTGGTGA
ACTGTGCCTTCCTGCGTGAAGGAGCGCCTATTCCGCCCCAGCCGCCAGTC
GGCCACTGGAAGCCGGAGGCATCTCAGTTCCTTCGCGACGGATCGCGCAT
AGAGGCCGGCTTTCGCCGATACTTCCACCGCGCCTATCCCGACCAAGAGA
AGGAGAGCTATACCCTGATCGTGGGACACGGCAACGTGATCCGCTACTTT
GTCTGCCGAGCCCTGCAGTTCCCCGCCGAGGGTTGGCTACGGATTAACAT
TAATCACGCTTCCATCACCTGGCTGACCATCAGTCCATCCGGNCACGTGT
CCATCAAGTACCTGGGCGACTCCGGCTTTATGCCCGCCGAGCTG

BO06811.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14816-PA 870 CG14816-RA 1..828 17..844 4096 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-RA 1100 CG14816-RA 36..863 17..844 4114 99.8 Plus
Pgam5-RB 1097 CG14816-RB 36..860 17..844 4059 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1872973..1873530 574..17 2790 100 Minus
X 23542271 X 1872637..1872906 844..575 1324 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 01:21:22 has no hits.

BO06811.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:15 Download gff for BO06811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14816-PA 1..828 17..844 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:36 Download gff for BO06811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14816-PA 1..828 17..844 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:10 Download gff for BO06811.5prime
Subject Subject Range Query Range Percent Splice Strand
Pgam5-RA 36..863 17..844 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:09:58 Download gff for BO06811.5prime
Subject Subject Range Query Range Percent Splice Strand
Pgam5-RA 36..863 17..844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:09:58 Download gff for BO06811.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1872637..1872906 575..844 99 <- Minus
X 1872973..1873530 17..574 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:10 Download gff for BO06811.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1766670..1766939 575..844 99 <- Minus
arm_X 1767006..1767563 17..574 100   Minus

BO06811.complete Sequence

901 bp (901 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630542

> BO06811.complete
GAAGTTATCAGTCGACATGCGAAAGTTGACTAGCTTCGTGTGCGGCACAG
GAGCCGGACTGGCGGCTTACTACCTACAGCGGCTGCGGGACCCGCAGACG
GTCGTGCAGAACTCGTGGACGCACAGTGATAAGCCGGTGGATCCGTGGGC
CCTTTGGGACACCAACTGGGATTGCCGGGAGCCACGGGCCCTCGTGCGTC
CACTGCGAAACAGCCAGCCGGAGGAGGAGAACCGCTACAACGCGGAGCTT
GAGAAGGCGAAGGCCAAGAAGGCGCGCCACATTATCCTAGTGCGGCATGG
CGAGTATCTGGACGTGGGTGACTCGGATGACACGCATCATCTCACGGAGC
GCGGCCGCAAGCAGGCGGAGTTTACTGGGAAACGGCTCTGCGAGCTGGGC
ATCAAGTGGGACAAGGTAGTAGCCTCCACAATGGTGCGGGCCCAGGAGAC
TTCCGATATTATTCTCAAGCAGATCGATTTCGAAAAAGAGAAAGTGGTGA
ACTGTGCCTTCCTGCGTGAAGGAGCGCCTATTCCGCCCCAGCCGCCAGTC
GGCCACTGGAAGCCGGAGGCATCTCAGTTCCTTCGCGACGGATCGCGCAT
AGAGGCCGGCTTTCGCCGATACTTCCACCGCGCCTATCCCGACCAAGAGA
AGGAGAGCTATACCCTGATCGTGGGACACGGCAACGTGATCCGCTACTTT
GTCTGCCGAGCCCTGCAGTTCCCCGCCGAGGGTTGGCTACGGATTAACAT
TAATCACGCTTCCATCACCTGGCTGACCATCAGTCCATCCGGCAACGTGT
CCATCAAGTACCTGGGCGACTCCGGCTTTATGCCCGCCGAGCTGCTTACC
AATCGCATACCGCGCGACGTCAAAAACGTGGTTGCAAGCTTTCTAGACCA
T

BO06811.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-RA 870 CG14816-PA 1..867 17..883 4335 100 Plus
Pgam5-RB 867 CG14816-PB 1..864 17..883 4255 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-RA 1100 CG14816-RA 36..902 17..883 4335 100 Plus
Pgam5-RB 1097 CG14816-RB 36..899 17..883 4255 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1872973..1873530 574..17 2790 100 Minus
X 23542271 X 1872598..1872906 883..575 1545 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:08:06 has no hits.

BO06811.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:54 Download gff for BO06811.complete
Subject Subject Range Query Range Percent Splice Strand
CG14816-RA 1..870 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:05 Download gff for BO06811.complete
Subject Subject Range Query Range Percent Splice Strand
CG14816-RA 2..878 13..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:22 Download gff for BO06811.complete
Subject Subject Range Query Range Percent Splice Strand
Pgam5-RA 36..902 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:54 Download gff for BO06811.complete
Subject Subject Range Query Range Percent Splice Strand
CG14816-RA 2..878 13..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:39 Download gff for BO06811.complete
Subject Subject Range Query Range Percent Splice Strand
Pgam5-RA 36..902 17..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:39 Download gff for BO06811.complete
Subject Subject Range Query Range Percent Splice Strand
X 1872594..1872906 575..885 99 <- Minus
X 1872973..1873530 17..574 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:22 Download gff for BO06811.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1766627..1766939 575..885 99 <- Minus
arm_X 1767006..1767563 17..574 100   Minus

BO06811.pep Sequence

Translation from 16 to 901

> BO06811.pep
MRKLTSFVCGTGAGLAAYYLQRLRDPQTVVQNSWTHSDKPVDPWALWDTN
WDCREPRALVRPLRNSQPEEENRYNAELEKAKAKKARHIILVRHGEYLDV
GDSDDTHHLTERGRKQAEFTGKRLCELGIKWDKVVASTMVRAQETSDIIL
KQIDFEKEKVVNCAFLREGAPIPPQPPVGHWKPEASQFLRDGSRIEAGFR
RYFHRAYPDQEKESYTLIVGHGNVIRYFVCRALQFPAEGWLRININHASI
TWLTISPSGNVSIKYLGDSGFMPAELLTNRIPRDVKNVVASFLDH

BO06811.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-PA 289 CG14816-PA 1..289 1..289 1553 100 Plus
Pgam5-PB 288 CG14816-PB 1..288 1..289 1536 99.7 Plus
Pgam5-2-PA 280 CG15874-PA 8..277 2..287 573 44.2 Plus