Clone Sequence Records
BO06811.3prime Sequence
874 bp (862 high quality bases) assembled on 2005-12-03
> BO06811.3prime
ATGGTCTAGAAAGCTTGCAACCACGTTTTTGACGTCGCGCGGTATGCGAT
TGGTAAGCAGCTCGGCGGGCATAAAGCCGGAGTCGCCCAGGTACTTGATG
GACACGTTGCCGGATGGACTGATGGTCAGCCAGGTGATGGAAGCGTGATT
AATGTTAATCCGTAGCCAACCCTCGGCGGGGAACTGCAGGGCTCGGCAGA
CAAAGTAGCGGATCACGTTGCCGTGTCCCACGATCAGGGTATAGCTCTCC
TTCTCTTGGTCGGGATAGGCGCGGTGGAAGTATCGGCGAAAGCCGGCCTC
TATGCGCGATCCGTCGCGAAGGAACTGAGATGCCTCCGGCTTCCAGTGGC
CGACTGGCGGCTGGGGCGGAATAGGCGCTCCTTCACGCAGGAAGGCACAG
TTCACCACTTTCTCTTTTTCGAAATCGATCTGCTTGAGAATAATATCGGA
AGTCTCCTGGGCCCGCACCATTGTGGAGGCTACTACCTTGTCCCACTTGA
TGCCCAGCTCGCAGAGCCGTTTCCCAGTAAACTCCGCCTGCTTGCGGCCG
CGCTCCGTGAGATGATGCGTGTCATCCGAGTCACCCACGTCCAGATACTC
GCCATGCCGCACTAGGATAATGTGGCGCGCCTTCTTGGCCTTCGCCTTCT
CAAGCTCCGCGTTGTAGCGGTTCTCCTCCTCCGGCTGGCTGTTTCGCAGT
GGACGCACGAGGGCCCGTGGCTCCCGGCAATCCCAGTTGGTGTCCCAAAG
GGCCCACGGATCCACCGGCTTATCACTGTGCGTCCACGAGTTCTGCACGA
CCGTCTGCGGGTCCCGCAGCCGCTGTAGGTAGTAAGCCGCCAGTCCGGCT
CCTGTGCCGCACACGAAGCTAGTC
BO06811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14816-PA | 870 | CG14816-RA | 12..867 | 874..19 | 4280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pgam5-RA | 1100 | CG14816-RA | 47..902 | 874..19 | 4280 | 100 | Minus |
Pgam5-RB | 1097 | CG14816-RB | 47..899 | 874..19 | 4225 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1872973..1873519 | 328..874 | 2735 | 100 | Plus |
X | 23542271 | X | 1872598..1872906 | 19..327 | 1545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:45:01 has no hits.
BO06811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:13 Download gff for
BO06811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14816-PA | 12..870 | 18..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:35 Download gff for
BO06811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14816-PA | 12..870 | 18..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:48 Download gff for
BO06811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgam5-RA | 47..906 | 13..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:43:22 Download gff for
BO06811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgam5-RA | 47..906 | 13..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:43:22 Download gff for
BO06811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1872594..1872906 | 13..327 | 99 | <- | Plus |
X | 1872973..1873519 | 328..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:48 Download gff for
BO06811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1766627..1766939 | 13..327 | 99 | <- | Plus |
arm_X | 1767006..1767552 | 328..874 | 100 | | Plus |
BO06811.5prime Sequence
844 bp (789 high quality bases) assembled on 2005-12-03
> BO06811.5prime
GAAGTTATCAGTCGACATGCGAAAGTTGACTAGCTTCGTGTGCGGCACAG
GAGCCGGACTGGCGGCTTACTACCTACAGCGGCTGCGGGACCCGCAGACG
GTCGTGCAGAACTCGTGGACGCACAGTGATAAGCCGGTGGATCCGTGGGC
CCTTTGGGACACCAACTGGGATTGCCGGGAGCCACGGGCCCTCGTGCGTC
CACTGCGAAACAGCCAGCCGGAGGAGGAGAACCGCTACAACGCGGAGCTT
GAGAAGGCGAAGGCCAAGAAGGCGCGCCACATTATCCTAGTGCGGCATGG
CGAGTATCTGGACGTGGGTGACTCGGATGACACGCATCATCTCACGGAGC
GCGGCCGCAAGCAGGCGGAGTTTACTGGGAAACGGCTCTGCGAGCTGGGC
ATCAAGTGGGACAAGGTAGTAGCCTCCACAATGGTGCGGGCCCAGGAGAC
TTCCGATATTATTCTCAAGCAGATCGATTTCGAAAAAGAGAAAGTGGTGA
ACTGTGCCTTCCTGCGTGAAGGAGCGCCTATTCCGCCCCAGCCGCCAGTC
GGCCACTGGAAGCCGGAGGCATCTCAGTTCCTTCGCGACGGATCGCGCAT
AGAGGCCGGCTTTCGCCGATACTTCCACCGCGCCTATCCCGACCAAGAGA
AGGAGAGCTATACCCTGATCGTGGGACACGGCAACGTGATCCGCTACTTT
GTCTGCCGAGCCCTGCAGTTCCCCGCCGAGGGTTGGCTACGGATTAACAT
TAATCACGCTTCCATCACCTGGCTGACCATCAGTCCATCCGGNCACGTGT
CCATCAAGTACCTGGGCGACTCCGGCTTTATGCCCGCCGAGCTG
BO06811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14816-PA | 870 | CG14816-RA | 1..828 | 17..844 | 4096 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pgam5-RA | 1100 | CG14816-RA | 36..863 | 17..844 | 4114 | 99.8 | Plus |
Pgam5-RB | 1097 | CG14816-RB | 36..860 | 17..844 | 4059 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1872973..1873530 | 574..17 | 2790 | 100 | Minus |
X | 23542271 | X | 1872637..1872906 | 844..575 | 1324 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:21:22 has no hits.
BO06811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:15 Download gff for
BO06811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14816-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:36 Download gff for
BO06811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14816-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:10 Download gff for
BO06811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgam5-RA | 36..863 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:09:58 Download gff for
BO06811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgam5-RA | 36..863 | 17..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:09:58 Download gff for
BO06811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1872637..1872906 | 575..844 | 99 | <- | Minus |
X | 1872973..1873530 | 17..574 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:10 Download gff for
BO06811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1766670..1766939 | 575..844 | 99 | <- | Minus |
arm_X | 1767006..1767563 | 17..574 | 100 | | Minus |
BO06811.complete Sequence
901 bp (901 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630542
> BO06811.complete
GAAGTTATCAGTCGACATGCGAAAGTTGACTAGCTTCGTGTGCGGCACAG
GAGCCGGACTGGCGGCTTACTACCTACAGCGGCTGCGGGACCCGCAGACG
GTCGTGCAGAACTCGTGGACGCACAGTGATAAGCCGGTGGATCCGTGGGC
CCTTTGGGACACCAACTGGGATTGCCGGGAGCCACGGGCCCTCGTGCGTC
CACTGCGAAACAGCCAGCCGGAGGAGGAGAACCGCTACAACGCGGAGCTT
GAGAAGGCGAAGGCCAAGAAGGCGCGCCACATTATCCTAGTGCGGCATGG
CGAGTATCTGGACGTGGGTGACTCGGATGACACGCATCATCTCACGGAGC
GCGGCCGCAAGCAGGCGGAGTTTACTGGGAAACGGCTCTGCGAGCTGGGC
ATCAAGTGGGACAAGGTAGTAGCCTCCACAATGGTGCGGGCCCAGGAGAC
TTCCGATATTATTCTCAAGCAGATCGATTTCGAAAAAGAGAAAGTGGTGA
ACTGTGCCTTCCTGCGTGAAGGAGCGCCTATTCCGCCCCAGCCGCCAGTC
GGCCACTGGAAGCCGGAGGCATCTCAGTTCCTTCGCGACGGATCGCGCAT
AGAGGCCGGCTTTCGCCGATACTTCCACCGCGCCTATCCCGACCAAGAGA
AGGAGAGCTATACCCTGATCGTGGGACACGGCAACGTGATCCGCTACTTT
GTCTGCCGAGCCCTGCAGTTCCCCGCCGAGGGTTGGCTACGGATTAACAT
TAATCACGCTTCCATCACCTGGCTGACCATCAGTCCATCCGGCAACGTGT
CCATCAAGTACCTGGGCGACTCCGGCTTTATGCCCGCCGAGCTGCTTACC
AATCGCATACCGCGCGACGTCAAAAACGTGGTTGCAAGCTTTCTAGACCA
T
BO06811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pgam5-RA | 870 | CG14816-PA | 1..867 | 17..883 | 4335 | 100 | Plus |
Pgam5-RB | 867 | CG14816-PB | 1..864 | 17..883 | 4255 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pgam5-RA | 1100 | CG14816-RA | 36..902 | 17..883 | 4335 | 100 | Plus |
Pgam5-RB | 1097 | CG14816-RB | 36..899 | 17..883 | 4255 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1872973..1873530 | 574..17 | 2790 | 100 | Minus |
X | 23542271 | X | 1872598..1872906 | 883..575 | 1545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:08:06 has no hits.
BO06811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:54 Download gff for
BO06811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14816-RA | 1..870 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:05 Download gff for
BO06811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14816-RA | 2..878 | 13..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:22 Download gff for
BO06811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgam5-RA | 36..902 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:54 Download gff for
BO06811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14816-RA | 2..878 | 13..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:39 Download gff for
BO06811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgam5-RA | 36..902 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:39 Download gff for
BO06811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1872594..1872906 | 575..885 | 99 | <- | Minus |
X | 1872973..1873530 | 17..574 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:22 Download gff for
BO06811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1766627..1766939 | 575..885 | 99 | <- | Minus |
arm_X | 1767006..1767563 | 17..574 | 100 | | Minus |
BO06811.pep Sequence
Translation from 16 to 901
> BO06811.pep
MRKLTSFVCGTGAGLAAYYLQRLRDPQTVVQNSWTHSDKPVDPWALWDTN
WDCREPRALVRPLRNSQPEEENRYNAELEKAKAKKARHIILVRHGEYLDV
GDSDDTHHLTERGRKQAEFTGKRLCELGIKWDKVVASTMVRAQETSDIIL
KQIDFEKEKVVNCAFLREGAPIPPQPPVGHWKPEASQFLRDGSRIEAGFR
RYFHRAYPDQEKESYTLIVGHGNVIRYFVCRALQFPAEGWLRININHASI
TWLTISPSGNVSIKYLGDSGFMPAELLTNRIPRDVKNVVASFLDH
BO06811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pgam5-PA | 289 | CG14816-PA | 1..289 | 1..289 | 1553 | 100 | Plus |
Pgam5-PB | 288 | CG14816-PB | 1..288 | 1..289 | 1536 | 99.7 | Plus |
Pgam5-2-PA | 280 | CG15874-PA | 8..277 | 2..287 | 573 | 44.2 | Plus |