Clone Sequence Records
BO06815.3prime Sequence
815 bp (805 high quality bases) assembled on 2005-12-03
> BO06815.3prime
ATGGTCTAGAAAGCTTGCGATACCGGAAGTTTCCTTGATCCAATCGCGAT
AGTAAGTGATACGGGTGAAAGCAGCTGGTGCGCCAGACTCGCAACCATCA
GCGGATCCAAAGGAGGTGGCACCGATGAGGACACCATCGAGAGCCAATGG
GCCGCCGGAATCACCCTGGCAGGTGGAGGCCTTGTTGGTGGTGTCAACGC
AGAGGACCCTGCTGGTCACGATCAGGCTTCCGAAGGTTTCCTGGCATTTG
GAGTTGGAGATGATGGTAAGGTCCACGTACTGCAGATCGCGAGACACGGC
GGTGGCTTGGTCGGAGGTGAGACCCCATCCGGAGGCAACAGCGGTCTTTC
CCTCGTAGGTGGAGTAGCTGTTGGAGACGGCGGGCAGGCTGATCTTGTTC
ACGGTAGCCGAGAAGGACACGGACGAAGTCTGGATCAGGGAGATGTCGTT
GCGGATGGTCAAAGCCAGGTAGCTTTCGTGCTGCCTAAACTTTGAGCTGC
TGACGACTTGGGTGAACTCGGGGCTAGTACGGACAGTGGCACCGTAGTAG
ATGGTCACGGAGGCGGCACCGTCGGTACAGTGAGCAGCAGTCAGCACCCA
CTCGTTTCCGATGATGGAGCCACCGCACCACCAACTGCCAGCAGAGCTGG
AGAAACTAAGTCCCACCTGGTAGGGGAACTGGCCGGCAACGGCGTCCTTG
CCGTTGGTGATGCGACCGGTGATGGATGGGGTCGAGACCCTGTCACGGGG
ATGTACAGGGGCAATATTGGGCAGGAGCCCAGCGGAGGCGGAGGCCAGAG
CCAGAACCAAAACTA
BO06815.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6457-PA | 813 | yip7-RA | 14..810 | 815..19 | 3985 | 100 | Minus |
CG6467-PA | 816 | Jon65Aiv-RA | 138..165 | 685..658 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:02:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip7-RA | 904 | CG6457-RA | 41..837 | 815..19 | 3985 | 100 | Minus |
CG10477-RB | 1039 | CG10477-RB | 118..512 | 717..323 | 475 | 75.3 | Minus |
CG10477-RA | 1361 | CG10477-RA | 118..512 | 717..323 | 475 | 75.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6035558..6036108 | 569..19 | 2755 | 100 | Minus |
3L | 28110227 | 3L | 6035256..6035502 | 815..569 | 1235 | 100 | Minus |
3L | 28110227 | 3L | 6050888..6051027 | 717..578 | 355 | 83.6 | Minus |
2L | 23513712 | 2L | 4954803..4954940 | 496..633 | 270 | 79.7 | Plus |
3L | 28110227 | 3L | 6034048..6034178 | 323..453 | 265 | 80.2 | Plus |
3L | 28110227 | 3L | 6034351..6034494 | 574..717 | 240 | 77.8 | Plus |
2L | 23513712 | 2L | 4950474..4950571 | 536..633 | 220 | 81.6 | Plus |
2L | 23513712 | 2L | 4952816..4952910 | 539..633 | 220 | 82.1 | Plus |
3R | 32079331 | 3R | 29922422..29922518 | 633..537 | 200 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:02:39 has no hits.
BO06815.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:22 Download gff for
BO06815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-PA | 15..813 | 15..814 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:45 Download gff for
BO06815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6457-PA | 15..813 | 15..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:45:31 Download gff for
BO06815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 42..841 | 14..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:17 Download gff for
BO06815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 42..841 | 14..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:17 Download gff for
BO06815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6035257..6035502 | 569..814 | 100 | -> | Minus |
3L | 6035559..6036112 | 14..568 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:45:31 Download gff for
BO06815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6028357..6028602 | 569..814 | 100 | -> | Minus |
arm_3L | 6028659..6029212 | 14..568 | 99 | | Minus |
BO06815.5prime Sequence
842 bp (633 high quality bases) assembled on 2005-12-03
> BO06815.5prime
GAAGTTATCAGTCGACATGAAGGTTTTCGTAGTTTTGGTTCTGGCTCTGG
CCTCCGCCTCCGCTGGGCTCCTGCCCAATATTGCCCCTGTACATCCCCGT
GACAGGGTCTCGACCCCATCCATCACCGGTCGCATCACCAACGGCAAGGA
CGCCGTTGCCGGCCAGTTCCCCTACCAGGTGGGACTTAGTTTCTCCAGCT
CTGCTGGCAGTTGGTGGTGCGGTGGCTCCATCATCGGAAACGAGTGGGTG
CTGACTGCTGCTCACTGTACCGACGGTGCCGCCTCCGTGACCATCTACTA
CGGTGCCACTGTCCGTACTAGCCCCGAGTTCACCCAAGTCGTCAGCAGCT
CAAAGTTTAGGCAGCACGAAAGCTACCTGGCTTTGACCATCCGCAACGAC
ATCTCCCTGATCCAGACTTCGTCCGTGTCCTTCTCGGCTACCGTGAACAA
GATCAGCCTGCCCGCCGTCTCCAACAGCTACTCCACCTACGAGGGAAAGA
CCGCTGTTGCCTCCGGATGGGGTCTCACCTCCGACCAAGCCACCGCCGTG
TCTCGCGATCTGCAGTACGTGGACCTTACCATCATCTCCAACTCCAAATG
CCAGGAAACCTTCGGAAGCCTGATCGTGACCAGCAGGGTCCTCTGCGTTG
ACACCACCAACAAGGCCTCCACCTGCCAGGGTGATTCCGGCGGCCCATTG
GCTCTCGATGGTGTCCTCATCGGTGCCACCTCCTTTGGATCCGCTGATGG
TTGCGAGTCTGGCGCACCAGCTGCTTTCACCCGTATCACTTACTATCGCG
ATTGGATCAAGGAAACTTCCGGTATCGCAAGCTTTCTAGACC
BO06815.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6457-PA | 813 | yip7-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
CG6467-PA | 816 | Jon65Aiv-RA | 138..165 | 160..187 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip7-RA | 904 | CG6457-RA | 27..837 | 16..826 | 4055 | 100 | Plus |
CG10477-RB | 1039 | CG10477-RB | 118..512 | 128..522 | 475 | 75.3 | Plus |
CG10477-RA | 1361 | CG10477-RA | 118..512 | 128..522 | 475 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6035558..6036108 | 276..826 | 2755 | 100 | Plus |
3L | 28110227 | 3L | 6035242..6035502 | 16..276 | 1305 | 100 | Plus |
3L | 28110227 | 3L | 6050888..6051027 | 128..267 | 355 | 83.6 | Plus |
2L | 23513712 | 2L | 4954803..4954940 | 349..212 | 270 | 79.7 | Minus |
3L | 28110227 | 3L | 6034048..6034178 | 522..392 | 265 | 80.2 | Minus |
3L | 28110227 | 3L | 6034351..6034494 | 271..128 | 240 | 77.8 | Minus |
2L | 23513712 | 2L | 4950474..4950571 | 309..212 | 220 | 81.6 | Minus |
2L | 23513712 | 2L | 4952816..4952910 | 306..212 | 220 | 82.1 | Minus |
3R | 32079331 | 3R | 29922422..29922518 | 212..308 | 200 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:22:56 has no hits.
BO06815.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:23 Download gff for
BO06815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-PA | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:47 Download gff for
BO06815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6457-PA | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:01:28 Download gff for
BO06815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 21..841 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:57 Download gff for
BO06815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 21..841 | 9..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:57 Download gff for
BO06815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6035236..6035502 | 9..276 | 98 | -> | Plus |
3L | 6035559..6036112 | 277..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:01:28 Download gff for
BO06815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6028336..6028602 | 9..276 | 98 | -> | Plus |
arm_3L | 6028659..6029212 | 277..831 | 99 | | Plus |
BO06815.complete Sequence
844 bp (844 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630543
> BO06815.complete
GAAGTTATCAGTCGACATGAAGGTTTTCGTAGTTTTGGTTCTGGCTCTGG
CCTCCGCCTCCGCTGGGCTCCTGCCCAATATTGCCCCTGTACATCCCCGT
GACAGGGTCTCGACCCCATCCATCACCGGTCGCATCACCAACGGCAAGGA
CGCCGTTGCCGGCCAGTTCCCCTACCAGGTGGGACTTAGTTTCTCCAGCT
CTGCTGGCAGTTGGTGGTGCGGTGGCTCCATCATCGGAAACGAGTGGGTG
CTGACTGCTGCTCACTGTACCGACGGTGCCGCCTCCGTGACCATCTACTA
CGGTGCCACTGTCCGTACTAGCCCCGAGTTCACCCAAGTCGTCAGCAGCT
CAAAGTTTAGGCAGCACGAAAGCTACCTGGCTTTGACCATCCGCAACGAC
ATCTCCCTGATCCAGACTTCGTCCGTGTCCTTCTCGGCTACCGTGAACAA
GATCAGCCTGCCCGCCGTCTCCAACAGCTACTCCACCTACGAGGGAAAGA
CCGCTGTTGCCTCCGGATGGGGTCTCACCTCCGACCAAGCCACCGCCGTG
TCTCGCGATCTGCAGTACGTGGACCTTACCATCATCTCCAACTCCAAATG
CCAGGAAACCTTCGGAAGCCTGATCGTGACCAGCAGGGTCCTCTGCGTTG
ACACCACCAACAAGGCCTCCACCTGCCAGGGTGATTCCGGCGGCCCATTG
GCTCTCGATGGTGTCCTCATCGGTGCCACCTCCTTTGGATCCGCTGATGG
TTGCGAGTCTGGCGCACCAGCTGCTTTCACCCGTATCACTTACTATCGCG
ATTGGATCAAGGAAACTTCCGGTATCGCAAGCTTTCTAGACCAT
BO06815.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip7-RA | 813 | CG6457-PA | 1..810 | 17..826 | 4050 | 100 | Plus |
CG10477-RB | 819 | CG10477-PB | 112..506 | 128..522 | 475 | 74.7 | Plus |
CG10477-RA | 819 | CG10477-PA | 112..506 | 128..522 | 475 | 74.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip7-RA | 904 | CG6457-RA | 27..837 | 16..826 | 4055 | 100 | Plus |
CG10477-RB | 1039 | CG10477-RB | 118..512 | 128..522 | 475 | 74.7 | Plus |
CG10477-RA | 1361 | CG10477-RA | 118..512 | 128..522 | 475 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6035558..6036108 | 276..826 | 2755 | 100 | Plus |
3L | 28110227 | 3L | 6035242..6035502 | 16..276 | 1305 | 100 | Plus |
3L | 28110227 | 3L | 6050888..6051027 | 128..267 | 355 | 83.6 | Plus |
2L | 23513712 | 2L | 4954803..4954940 | 349..212 | 270 | 79.7 | Minus |
3L | 28110227 | 3L | 6034048..6034178 | 522..392 | 265 | 80.2 | Minus |
3L | 28110227 | 3L | 6034351..6034494 | 271..128 | 240 | 77.8 | Minus |
2L | 23513712 | 2L | 4950474..4950571 | 309..212 | 220 | 81.6 | Minus |
2L | 23513712 | 2L | 4952816..4952910 | 306..212 | 220 | 82.1 | Minus |
3R | 32079331 | 3R | 29922422..29922518 | 212..308 | 200 | 80.4 | Plus |
3R | 32079331 | 3R | 30489174..30489270 | 212..308 | 200 | 80.4 | Plus |
3R | 32079331 | 3R | 29924311..29924407 | 308..212 | 185 | 79.4 | Minus |
3R | 32079331 | 3R | 30487621..30487717 | 308..212 | 185 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:10:39 has no hits.
BO06815.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:56 Download gff for
BO06815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:06 Download gff for
BO06815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 7..827 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:06 Download gff for
BO06815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 28..837 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:56 Download gff for
BO06815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 7..827 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:54 Download gff for
BO06815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip7-RA | 28..837 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:54 Download gff for
BO06815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6035243..6035502 | 17..276 | 100 | -> | Plus |
3L | 6035559..6036108 | 277..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:06 Download gff for
BO06815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6028343..6028602 | 17..276 | 100 | -> | Plus |
arm_3L | 6028659..6029208 | 277..828 | 99 | | Plus |
BO06815.pep Sequence
Translation from 16 to 844
> BO06815.pep
MKVFVVLVLALASASAGLLPNIAPVHPRDRVSTPSITGRITNGKDAVAGQ
FPYQVGLSFSSSAGSWWCGGSIIGNEWVLTAAHCTDGAASVTIYYGATVR
TSPEFTQVVSSSKFRQHESYLALTIRNDISLIQTSSVSFSATVNKISLPA
VSNSYSTYEGKTAVASGWGLTSDQATAVSRDLQYVDLTIISNSKCQETFG
SLIVTSRVLCVDTTNKASTCQGDSGGPLALDGVLIGATSFGSADGCESGA
PAAFTRITYYRDWIKETSGIASFLDH
BO06815.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip7-PA | 270 | CG6457-PA | 1..270 | 1..270 | 1378 | 100 | Plus |
CG10477-PB | 272 | CG10477-PB | 1..270 | 1..270 | 950 | 66.7 | Plus |
CG10477-PA | 272 | CG10477-PA | 1..270 | 1..270 | 950 | 66.7 | Plus |
Jon65Aiii-PA | 274 | CG6483-PA | 1..273 | 1..271 | 923 | 63 | Plus |
Jon65Aiv-PA | 271 | CG6467-PA | 1..271 | 1..270 | 736 | 55.3 | Plus |