Clone BO06817 Report

Search the DGRC for BO06817

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG11790-RA
Protein status:BO06817.pep: validated full length
Sequenced Size:940

Clone Sequence Records

BO06817.3prime Sequence

937 bp (792 high quality bases) assembled on 2005-12-03

> BO06817.3prime
ATGGTCTAGAAAGCTTGCTTTCGACTTATTTTTTGTTTTCGCAGGCTCTG
AACTGAATATTTTGGCAACCTTTTTGCCAACGAATAAGAGAGCAACTAAG
GCGAAAATACTCAAAGTCGCCAGCGATGTTATGTTTTCAGCTGCAAAATA
ACTTTGCAGTGGGCCCAAAAATTCGTTTACGGCACTTGGGATTGCGGGCA
CTGGTTGAGGATGGCTCTGGGTATATCCCTTCTCAGCAAACTGGACAAAG
GCTTCGGGACTGTATTGCTTGGCTGAATATTTGTACATCTTTCCTTGCCT
CAAGAAAATAAAAGCCGGTGCTTCCAATACTCCCAGTCGCGTAGCAGTTG
AGATTCCAGACTCCAAACTGTTCATGCGGGCAATATTCAGCTTTCGCTTT
AGCTTTCCGCCCACAGACTCCCAAACGGCATAGAGTCGCTGACAGACGGT
ACATTCGGCCGAAGAGAAGAAGATAAACCAGTCCCCGGTAGTGGCACCCG
ACGAGGCTTGAGTCAGGTGCTCGAAGTTGTCGTCGGAAAGCTCTTTGACC
GCTGGCTCTAAGTTGTCATTGAAGAAGTCTAGGATTTCGTCATCGTTGAT
CTCGCCATGGTATAGAATGGGTATTCCTCGCCTGAAGAACACCAAAGCGG
GCTCCTTGCTGGGGTCATAGATGGATACCAGGTTGCTGTCCACCGACTGG
ACCACAATGGCCGACAAGGTCTCCTCCAGCTGGGCACGTATCTTGGTCAC
CATGTTCTCATATTCCACGCAGCGCTGGCAATTGTTTTTGTTGAATAGGA
CAACCACATTGCTGCTGCCGGTCAGGAGTTGAATCAACTCGGTGTCGTCC
ACACGCCGCAAATCCTGGCCCACGGCACAGCCCAGACTCAGGGCTATAAT
AACACCGATACTATGTGCAGCATGTCGACTGATAACT

BO06817.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-PA 909 CG11790-RA 21..906 904..19 4405 99.8 Minus
CG11790-PB 738 CG11790-RB 1..735 753..19 3675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-RA 1010 CG11790-RA 81..986 923..19 4490 99.8 Minus
CG11790-RB 1116 CG11790-RB 320..1092 791..19 3865 100 Minus
CG11790-RC 1040 CG11790-RC 81..826 923..179 3690 99.7 Minus
CG11790-RB 1116 CG11790-RB 81..213 923..792 625 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25048025..25048349 791..467 1625 100 Minus
3R 32079331 3R 25048442..25048603 466..305 810 100 Minus
3R 32079331 3R 25049272..25049431 178..19 800 100 Minus
3R 32079331 3R 25048665..25048790 304..179 630 100 Minus
3R 32079331 3R 25047786..25047918 923..792 600 98.5 Minus
Blast to na_te.dros performed on 2015-02-09 19:20:12 has no hits.

BO06817.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:24 Download gff for BO06817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-PA 1..909 15..923 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:48 Download gff for BO06817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-PA 1..909 15..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:48 Download gff for BO06817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 81..993 12..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:42 Download gff for BO06817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 81..993 12..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:42 Download gff for BO06817.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25048665..25048790 179..304 100 -> Minus
3R 25047786..25047918 792..923 98 -> Minus
3R 25048025..25048349 467..791 100 -> Minus
3R 25048442..25048603 305..466 100 -> Minus
3R 25049272..25049430 20..178 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:48 Download gff for BO06817.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20873508..20873640 792..923 98 -> Minus
arm_3R 20873747..20874071 467..791 100 -> Minus
arm_3R 20874164..20874325 305..466 100 -> Minus
arm_3R 20874387..20874512 179..304 100 -> Minus
arm_3R 20874994..20875152 20..178 100 -> Minus

BO06817.5prime Sequence

921 bp (801 high quality bases) assembled on 2005-12-03

> BO06817.5prime
GAAGTTATCAGTCGACATGCTGCACATAGTATCGGTTGTTATTATAGCCC
TGAGTCTGGGCTGTGCCGTTGGCCAGGATTTGCGGCGTGTGGACGACACC
GAGTTGATTCAACTCCTGACCGGCAGCAGCAATGTGGTTGTCCTATTCAA
CAAAAACAATTGCCAGCGCTGCGTGGAATATGAGAACATGGTGACCAAGA
TACGTGCCCAGCTGGAGGAGACCTTGTCGGCCATTGTGGTCCAGTCGGTG
GACAGCAACCTGGTATCCATCTATGACCCCAGCAAGGAGCCCGCTTTGGT
GTTCTTCAGGCGAGGAATACCCATTCTATACCATGGCGAGATCAACGATG
ACGAAATCCTAGACTTCTTCAATGACAACTTAGAGCCAGCGGTCAAAGAG
CTTTCCGACGACAACTTCGAGCACCTGACTCAAGCCTCGTCGGGTGCCAC
TACCGGGGACTGGTTTATCTTCTTCTCTTCGGCCGAATGTACCGTCTGTC
AGCGACTCTATGCCGTTTGGGAGTCTGTGGGCGGAAAGCTAAAGCGAAAG
CTGAATATTGCCCGCATGAACAGTTTGGAGTCTGGAATCTCAACTGCTAC
GCGACTGGGAGTATTGGAAGCACCGGCTTTTATTTTCTTGAGGCAAGGAA
AGATGTACAAATATTCAGCCAAGCAATACAGTCCCGAAGCCTTTGTCCAG
TTTGCTGAGAAGGGATATACCCAGAGCCATCCTCAACCAGTGCCCGCAAT
CCCAAGTGCCGTANACGAATTTTTGGGCCCACTGCAAAGTTATTTTGCAG
CTGAAAACATAACATCGCTGGCGACTTTGAGTATTTTCGCCTTAGTTGCT
CTCTTATTCGTTGGCAAAAAGGTTGCCAAAATATTCAGTTCAGAGCCTGC
GAAAACAAAAAATAAGTCGAA

BO06817.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-PA 909 CG11790-RA 1..905 17..921 4506 99.8 Plus
CG11790-PB 738 CG11790-RB 1..734 188..921 3651 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-RA 1010 CG11790-RA 81..985 17..921 4514 99.9 Plus
CG11790-RB 1116 CG11790-RB 320..1091 150..921 3849 99.9 Plus
CG11790-RC 1040 CG11790-RC 81..826 17..762 3730 100 Plus
CG11790-RB 1116 CG11790-RB 81..213 17..149 665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25048025..25048349 150..474 1625 100 Plus
3R 32079331 3R 25048442..25048603 475..636 810 100 Plus
3R 32079331 3R 25049274..25049430 765..921 785 100 Plus
3R 32079331 3R 25047786..25047918 17..149 665 100 Plus
3R 32079331 3R 25048665..25048790 637..762 630 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:39:33 has no hits.

BO06817.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:25 Download gff for BO06817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:49 Download gff for BO06817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:20:00 Download gff for BO06817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 81..970 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:19:28 Download gff for BO06817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 81..970 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:19:28 Download gff for BO06817.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25048665..25048790 637..762 100 -> Plus
3R 25049272..25049415 763..906 99   Plus
3R 25048442..25048603 475..636 100 -> Plus
3R 25047786..25047918 17..149 100 -> Plus
3R 25048025..25048349 150..474 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:20:00 Download gff for BO06817.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20873508..20873640 17..149 100 -> Plus
arm_3R 20873747..20874071 150..474 100 -> Plus
arm_3R 20874164..20874325 475..636 100 -> Plus
arm_3R 20874387..20874512 637..762 100 -> Plus
arm_3R 20874994..20875137 763..906 99   Plus

BO06817.complete Sequence

940 bp (940 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630544

> BO06817.complete
GAAGTTATCAGTCGACATGCTGCACATAGTATCGGTTGTTATTATAGCCC
TGAGTCTGGGCTGTGCCGTTGGCCAGGATTTGCGGCGTGTGGACGACACC
GAGTTGATTCAACTCCTGACCGGCAGCAGCAATGTGGTTGTCCTATTCAA
CAAAAACAATTGCCAGCGCTGCGTGGAATATGAGAACATGGTGACCAAGA
TACGTGCCCAGCTGGAGGAGACCTTGTCGGCCATTGTGGTCCAGTCGGTG
GACAGCAACCTGGTATCCATCTATGACCCCAGCAAGGAGCCCGCTTTGGT
GTTCTTCAGGCGAGGAATACCCATTCTATACCATGGCGAGATCAACGATG
ACGAAATCCTAGACTTCTTCAATGACAACTTAGAGCCAGCGGTCAAAGAG
CTTTCCGACGACAACTTCGAGCACCTGACTCAAGCCTCGTCGGGTGCCAC
TACCGGGGACTGGTTTATCTTCTTCTCTTCGGCCGAATGTACCGTCTGTC
AGCGACTCTATGCCGTTTGGGAGTCTGTGGGCGGAAAGCTAAAGCGAAAG
CTGAATATTGCCCGCATGAACAGTTTGGAGTCTGGAATCTCAACTGCTAC
GCGACTGGGAGTATTGGAAGCACCGGCTTTTATTTTCTTGAGGCAAGGAA
AGATGTACAAATATTCAGCCAAGCAATACAGTCCCGAAGCCTTTGTCCAG
TTTGCTGAGAAGGGATATACCCAGAGCCATCCTCAACCAGTGCCCGCAAT
CCCAAGTGCCGTAAACGAATTTTTGGGCCCACTGCAAAGTTATTTTGCAG
CTGAAAACATAACATCGCTGGCGACTTTGAGTATTTTCGCCTTAGTTGCT
CTCTTATTCGTTGGCAAAAAGGTTGCCAAAATATTCAGTTCAGAGCCTGC
GAAAACAAAAAATAAGTCGAAAGCAAGCTTTCTAGACCAT

BO06817.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-RA 909 CG11790-PA 1..906 17..922 4530 100 Plus
CG11790-RC 756 CG11790-PC 1..746 17..762 3730 100 Plus
CG11790-RB 738 CG11790-PB 1..735 188..922 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-RA 1010 CG11790-RA 81..986 17..922 4530 100 Plus
CG11790-RB 1116 CG11790-RB 320..1092 150..922 3865 100 Plus
CG11790-RC 1040 CG11790-RC 81..826 17..762 3730 100 Plus
CG11790-RB 1116 CG11790-RB 81..213 17..149 665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25048025..25048349 150..474 1625 100 Plus
3R 32079331 3R 25048442..25048603 475..636 810 100 Plus
3R 32079331 3R 25049272..25049431 763..922 800 100 Plus
3R 32079331 3R 25047786..25047918 17..149 665 100 Plus
3R 32079331 3R 25048665..25048790 637..762 630 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:01:23 has no hits.

BO06817.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:57 Download gff for BO06817.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 1..909 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:08 Download gff for BO06817.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 87..999 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:22 Download gff for BO06817.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 81..986 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:57 Download gff for BO06817.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 87..999 17..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:10 Download gff for BO06817.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 81..986 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:10 Download gff for BO06817.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25047786..25047918 17..149 100 -> Plus
3R 25048025..25048349 150..474 100 -> Plus
3R 25048442..25048603 475..636 100 -> Plus
3R 25048665..25048790 637..762 100 -> Plus
3R 25049272..25049431 763..924 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:22 Download gff for BO06817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20873508..20873640 17..149 100 -> Plus
arm_3R 20873747..20874071 150..474 100 -> Plus
arm_3R 20874164..20874325 475..636 100 -> Plus
arm_3R 20874387..20874512 637..762 100 -> Plus
arm_3R 20874994..20875153 763..924 98   Plus

BO06817.pep Sequence

Translation from 16 to 940

> BO06817.pep
MLHIVSVVIIALSLGCAVGQDLRRVDDTELIQLLTGSSNVVVLFNKNNCQ
RCVEYENMVTKIRAQLEETLSAIVVQSVDSNLVSIYDPSKEPALVFFRRG
IPILYHGEINDDEILDFFNDNLEPAVKELSDDNFEHLTQASSGATTGDWF
IFFSSAECTVCQRLYAVWESVGGKLKRKLNIARMNSLESGISTATRLGVL
EAPAFIFLRQGKMYKYSAKQYSPEAFVQFAEKGYTQSHPQPVPAIPSAVN
EFLGPLQSYFAAENITSLATLSIFALVALLFVGKKVAKIFSSEPAKTKNK
SKASFLDH

BO06817.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-PA 302 CG11790-PA 1..302 1..302 1526 100 Plus
CG11790-PC 251 CG11790-PC 1..250 1..250 1272 99.6 Plus
CG11790-PB 245 CG11790-PB 1..245 58..302 1239 100 Plus