Clone Sequence Records
BO06817.3prime Sequence
937 bp (792 high quality bases) assembled on 2005-12-03
> BO06817.3prime
ATGGTCTAGAAAGCTTGCTTTCGACTTATTTTTTGTTTTCGCAGGCTCTG
AACTGAATATTTTGGCAACCTTTTTGCCAACGAATAAGAGAGCAACTAAG
GCGAAAATACTCAAAGTCGCCAGCGATGTTATGTTTTCAGCTGCAAAATA
ACTTTGCAGTGGGCCCAAAAATTCGTTTACGGCACTTGGGATTGCGGGCA
CTGGTTGAGGATGGCTCTGGGTATATCCCTTCTCAGCAAACTGGACAAAG
GCTTCGGGACTGTATTGCTTGGCTGAATATTTGTACATCTTTCCTTGCCT
CAAGAAAATAAAAGCCGGTGCTTCCAATACTCCCAGTCGCGTAGCAGTTG
AGATTCCAGACTCCAAACTGTTCATGCGGGCAATATTCAGCTTTCGCTTT
AGCTTTCCGCCCACAGACTCCCAAACGGCATAGAGTCGCTGACAGACGGT
ACATTCGGCCGAAGAGAAGAAGATAAACCAGTCCCCGGTAGTGGCACCCG
ACGAGGCTTGAGTCAGGTGCTCGAAGTTGTCGTCGGAAAGCTCTTTGACC
GCTGGCTCTAAGTTGTCATTGAAGAAGTCTAGGATTTCGTCATCGTTGAT
CTCGCCATGGTATAGAATGGGTATTCCTCGCCTGAAGAACACCAAAGCGG
GCTCCTTGCTGGGGTCATAGATGGATACCAGGTTGCTGTCCACCGACTGG
ACCACAATGGCCGACAAGGTCTCCTCCAGCTGGGCACGTATCTTGGTCAC
CATGTTCTCATATTCCACGCAGCGCTGGCAATTGTTTTTGTTGAATAGGA
CAACCACATTGCTGCTGCCGGTCAGGAGTTGAATCAACTCGGTGTCGTCC
ACACGCCGCAAATCCTGGCCCACGGCACAGCCCAGACTCAGGGCTATAAT
AACACCGATACTATGTGCAGCATGTCGACTGATAACT
BO06817.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-PA | 909 | CG11790-RA | 21..906 | 904..19 | 4405 | 99.8 | Minus |
CG11790-PB | 738 | CG11790-RB | 1..735 | 753..19 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RA | 1010 | CG11790-RA | 81..986 | 923..19 | 4490 | 99.8 | Minus |
CG11790-RB | 1116 | CG11790-RB | 320..1092 | 791..19 | 3865 | 100 | Minus |
CG11790-RC | 1040 | CG11790-RC | 81..826 | 923..179 | 3690 | 99.7 | Minus |
CG11790-RB | 1116 | CG11790-RB | 81..213 | 923..792 | 625 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25048025..25048349 | 791..467 | 1625 | 100 | Minus |
3R | 32079331 | 3R | 25048442..25048603 | 466..305 | 810 | 100 | Minus |
3R | 32079331 | 3R | 25049272..25049431 | 178..19 | 800 | 100 | Minus |
3R | 32079331 | 3R | 25048665..25048790 | 304..179 | 630 | 100 | Minus |
3R | 32079331 | 3R | 25047786..25047918 | 923..792 | 600 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:20:12 has no hits.
BO06817.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:24 Download gff for
BO06817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-PA | 1..909 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:48 Download gff for
BO06817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-PA | 1..909 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:48 Download gff for
BO06817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 81..993 | 12..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:42 Download gff for
BO06817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 81..993 | 12..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:42 Download gff for
BO06817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25048665..25048790 | 179..304 | 100 | -> | Minus |
3R | 25047786..25047918 | 792..923 | 98 | -> | Minus |
3R | 25048025..25048349 | 467..791 | 100 | -> | Minus |
3R | 25048442..25048603 | 305..466 | 100 | -> | Minus |
3R | 25049272..25049430 | 20..178 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:48 Download gff for
BO06817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20873508..20873640 | 792..923 | 98 | -> | Minus |
arm_3R | 20873747..20874071 | 467..791 | 100 | -> | Minus |
arm_3R | 20874164..20874325 | 305..466 | 100 | -> | Minus |
arm_3R | 20874387..20874512 | 179..304 | 100 | -> | Minus |
arm_3R | 20874994..20875152 | 20..178 | 100 | -> | Minus |
BO06817.5prime Sequence
921 bp (801 high quality bases) assembled on 2005-12-03
> BO06817.5prime
GAAGTTATCAGTCGACATGCTGCACATAGTATCGGTTGTTATTATAGCCC
TGAGTCTGGGCTGTGCCGTTGGCCAGGATTTGCGGCGTGTGGACGACACC
GAGTTGATTCAACTCCTGACCGGCAGCAGCAATGTGGTTGTCCTATTCAA
CAAAAACAATTGCCAGCGCTGCGTGGAATATGAGAACATGGTGACCAAGA
TACGTGCCCAGCTGGAGGAGACCTTGTCGGCCATTGTGGTCCAGTCGGTG
GACAGCAACCTGGTATCCATCTATGACCCCAGCAAGGAGCCCGCTTTGGT
GTTCTTCAGGCGAGGAATACCCATTCTATACCATGGCGAGATCAACGATG
ACGAAATCCTAGACTTCTTCAATGACAACTTAGAGCCAGCGGTCAAAGAG
CTTTCCGACGACAACTTCGAGCACCTGACTCAAGCCTCGTCGGGTGCCAC
TACCGGGGACTGGTTTATCTTCTTCTCTTCGGCCGAATGTACCGTCTGTC
AGCGACTCTATGCCGTTTGGGAGTCTGTGGGCGGAAAGCTAAAGCGAAAG
CTGAATATTGCCCGCATGAACAGTTTGGAGTCTGGAATCTCAACTGCTAC
GCGACTGGGAGTATTGGAAGCACCGGCTTTTATTTTCTTGAGGCAAGGAA
AGATGTACAAATATTCAGCCAAGCAATACAGTCCCGAAGCCTTTGTCCAG
TTTGCTGAGAAGGGATATACCCAGAGCCATCCTCAACCAGTGCCCGCAAT
CCCAAGTGCCGTANACGAATTTTTGGGCCCACTGCAAAGTTATTTTGCAG
CTGAAAACATAACATCGCTGGCGACTTTGAGTATTTTCGCCTTAGTTGCT
CTCTTATTCGTTGGCAAAAAGGTTGCCAAAATATTCAGTTCAGAGCCTGC
GAAAACAAAAAATAAGTCGAA
BO06817.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-PA | 909 | CG11790-RA | 1..905 | 17..921 | 4506 | 99.8 | Plus |
CG11790-PB | 738 | CG11790-RB | 1..734 | 188..921 | 3651 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RA | 1010 | CG11790-RA | 81..985 | 17..921 | 4514 | 99.9 | Plus |
CG11790-RB | 1116 | CG11790-RB | 320..1091 | 150..921 | 3849 | 99.9 | Plus |
CG11790-RC | 1040 | CG11790-RC | 81..826 | 17..762 | 3730 | 100 | Plus |
CG11790-RB | 1116 | CG11790-RB | 81..213 | 17..149 | 665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25048025..25048349 | 150..474 | 1625 | 100 | Plus |
3R | 32079331 | 3R | 25048442..25048603 | 475..636 | 810 | 100 | Plus |
3R | 32079331 | 3R | 25049274..25049430 | 765..921 | 785 | 100 | Plus |
3R | 32079331 | 3R | 25047786..25047918 | 17..149 | 665 | 100 | Plus |
3R | 32079331 | 3R | 25048665..25048790 | 637..762 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:39:33 has no hits.
BO06817.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:25 Download gff for
BO06817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:49 Download gff for
BO06817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:20:00 Download gff for
BO06817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 81..970 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:19:28 Download gff for
BO06817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 81..970 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:19:28 Download gff for
BO06817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25048665..25048790 | 637..762 | 100 | -> | Plus |
3R | 25049272..25049415 | 763..906 | 99 | | Plus |
3R | 25048442..25048603 | 475..636 | 100 | -> | Plus |
3R | 25047786..25047918 | 17..149 | 100 | -> | Plus |
3R | 25048025..25048349 | 150..474 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:20:00 Download gff for
BO06817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20873508..20873640 | 17..149 | 100 | -> | Plus |
arm_3R | 20873747..20874071 | 150..474 | 100 | -> | Plus |
arm_3R | 20874164..20874325 | 475..636 | 100 | -> | Plus |
arm_3R | 20874387..20874512 | 637..762 | 100 | -> | Plus |
arm_3R | 20874994..20875137 | 763..906 | 99 | | Plus |
BO06817.complete Sequence
940 bp (940 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630544
> BO06817.complete
GAAGTTATCAGTCGACATGCTGCACATAGTATCGGTTGTTATTATAGCCC
TGAGTCTGGGCTGTGCCGTTGGCCAGGATTTGCGGCGTGTGGACGACACC
GAGTTGATTCAACTCCTGACCGGCAGCAGCAATGTGGTTGTCCTATTCAA
CAAAAACAATTGCCAGCGCTGCGTGGAATATGAGAACATGGTGACCAAGA
TACGTGCCCAGCTGGAGGAGACCTTGTCGGCCATTGTGGTCCAGTCGGTG
GACAGCAACCTGGTATCCATCTATGACCCCAGCAAGGAGCCCGCTTTGGT
GTTCTTCAGGCGAGGAATACCCATTCTATACCATGGCGAGATCAACGATG
ACGAAATCCTAGACTTCTTCAATGACAACTTAGAGCCAGCGGTCAAAGAG
CTTTCCGACGACAACTTCGAGCACCTGACTCAAGCCTCGTCGGGTGCCAC
TACCGGGGACTGGTTTATCTTCTTCTCTTCGGCCGAATGTACCGTCTGTC
AGCGACTCTATGCCGTTTGGGAGTCTGTGGGCGGAAAGCTAAAGCGAAAG
CTGAATATTGCCCGCATGAACAGTTTGGAGTCTGGAATCTCAACTGCTAC
GCGACTGGGAGTATTGGAAGCACCGGCTTTTATTTTCTTGAGGCAAGGAA
AGATGTACAAATATTCAGCCAAGCAATACAGTCCCGAAGCCTTTGTCCAG
TTTGCTGAGAAGGGATATACCCAGAGCCATCCTCAACCAGTGCCCGCAAT
CCCAAGTGCCGTAAACGAATTTTTGGGCCCACTGCAAAGTTATTTTGCAG
CTGAAAACATAACATCGCTGGCGACTTTGAGTATTTTCGCCTTAGTTGCT
CTCTTATTCGTTGGCAAAAAGGTTGCCAAAATATTCAGTTCAGAGCCTGC
GAAAACAAAAAATAAGTCGAAAGCAAGCTTTCTAGACCAT
BO06817.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RA | 909 | CG11790-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
CG11790-RC | 756 | CG11790-PC | 1..746 | 17..762 | 3730 | 100 | Plus |
CG11790-RB | 738 | CG11790-PB | 1..735 | 188..922 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RA | 1010 | CG11790-RA | 81..986 | 17..922 | 4530 | 100 | Plus |
CG11790-RB | 1116 | CG11790-RB | 320..1092 | 150..922 | 3865 | 100 | Plus |
CG11790-RC | 1040 | CG11790-RC | 81..826 | 17..762 | 3730 | 100 | Plus |
CG11790-RB | 1116 | CG11790-RB | 81..213 | 17..149 | 665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25048025..25048349 | 150..474 | 1625 | 100 | Plus |
3R | 32079331 | 3R | 25048442..25048603 | 475..636 | 810 | 100 | Plus |
3R | 32079331 | 3R | 25049272..25049431 | 763..922 | 800 | 100 | Plus |
3R | 32079331 | 3R | 25047786..25047918 | 17..149 | 665 | 100 | Plus |
3R | 32079331 | 3R | 25048665..25048790 | 637..762 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:01:23 has no hits.
BO06817.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:57 Download gff for
BO06817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:08 Download gff for
BO06817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 87..999 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:22 Download gff for
BO06817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 81..986 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:57 Download gff for
BO06817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 87..999 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:10 Download gff for
BO06817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 81..986 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:10 Download gff for
BO06817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25047786..25047918 | 17..149 | 100 | -> | Plus |
3R | 25048025..25048349 | 150..474 | 100 | -> | Plus |
3R | 25048442..25048603 | 475..636 | 100 | -> | Plus |
3R | 25048665..25048790 | 637..762 | 100 | -> | Plus |
3R | 25049272..25049431 | 763..924 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:22 Download gff for
BO06817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20873508..20873640 | 17..149 | 100 | -> | Plus |
arm_3R | 20873747..20874071 | 150..474 | 100 | -> | Plus |
arm_3R | 20874164..20874325 | 475..636 | 100 | -> | Plus |
arm_3R | 20874387..20874512 | 637..762 | 100 | -> | Plus |
arm_3R | 20874994..20875153 | 763..924 | 98 | | Plus |
BO06817.pep Sequence
Translation from 16 to 940
> BO06817.pep
MLHIVSVVIIALSLGCAVGQDLRRVDDTELIQLLTGSSNVVVLFNKNNCQ
RCVEYENMVTKIRAQLEETLSAIVVQSVDSNLVSIYDPSKEPALVFFRRG
IPILYHGEINDDEILDFFNDNLEPAVKELSDDNFEHLTQASSGATTGDWF
IFFSSAECTVCQRLYAVWESVGGKLKRKLNIARMNSLESGISTATRLGVL
EAPAFIFLRQGKMYKYSAKQYSPEAFVQFAEKGYTQSHPQPVPAIPSAVN
EFLGPLQSYFAAENITSLATLSIFALVALLFVGKKVAKIFSSEPAKTKNK
SKASFLDH
BO06817.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-PA | 302 | CG11790-PA | 1..302 | 1..302 | 1526 | 100 | Plus |
CG11790-PC | 251 | CG11790-PC | 1..250 | 1..250 | 1272 | 99.6 | Plus |
CG11790-PB | 245 | CG11790-PB | 1..245 | 58..302 | 1239 | 100 | Plus |