Clone Sequence Records
BO06818.3prime Sequence
758 bp (757 high quality bases) assembled on 2005-12-03
> BO06818.3prime
ATGGTCTAGAAAGCTTGCCAGACCGGCCTGCAGACCAAAGCCAGGACCCT
TGGGCTCCTCGCTCAGGGAAGTGGGCTCGCCCTTTGGCTCGCTGGCAAAG
CGTCCGTTGCGTGGCCCAGGGGGCGATATCTTATCCGCCTTCAGGTCGTT
CAGGATGTCCTGCATGTCCTTGGATGTCAGATCCTCATAGTAGTCATCGT
TGATCGCCACCATTGGCGCATTGACACAGGCGCCCAAGCACTCGACCTCC
GAGATGGTGAACTTCCTGTCCTTGGTGGTGTCGCCGACGCCGATGCCCAG
CTGCTTCTTGCAGGTCTCCAGGATGTCGTCCGATCCGCGGAGCCAGCATG
GTGTGGTGGTGCACACCTGGATGTGATACTTGCCAGTGGGCTTGCGCATG
AACATCGTATAGAAAGTGGCCACCTCGTAGACGCGCATATTGGGCAACTG
GAGAATCTCGGCCACCTTGTGCATGGCAGAGATTGGCAGCCAGCCGTACT
GGCGCTGTGCCAGATCAAGCAGCGGGATCATGGCGCCGCGCTTGTGCCCC
TCCGGATAGATGCTGAGTATGGCCTCCACGCGCTTCTTGTTCTCCGCCGT
GAACTCGAACGGGATGTTGGGATTATCCTCCGGTGTGTCGCGATGGACGA
ACAGATTGTCGCTGGCCCGGGCACTGCTGGTGGCAATTGCCCGGATGTTG
GCGCGCACGGCGGCCAGTGTTTTGGAGGCACAGTTTGTCAGCATGTCGAC
TGATAACT
BO06818.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5703-PA | 729 | CG5703-RA | 1..726 | 744..19 | 3630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5703-RB | 906 | CG5703-RB | 102..827 | 744..19 | 3630 | 100 | Minus |
CG5703-RA | 1064 | CG5703-RA | 260..985 | 744..19 | 3630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17632589..17633109 | 706..186 | 2605 | 100 | Minus |
X | 23542271 | X | 17633263..17633430 | 186..19 | 840 | 100 | Minus |
X | 23542271 | X | 17632422..17632460 | 744..706 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:07:30 has no hits.
BO06818.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:26 Download gff for
BO06818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-PA | 1..729 | 18..744 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:50 Download gff for
BO06818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-PA | 1..729 | 18..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:07 Download gff for
BO06818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 258..985 | 19..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:56:04 Download gff for
BO06818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 258..985 | 19..747 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:56:04 Download gff for
BO06818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17632420..17632460 | 706..747 | 97 | -> | Minus |
X | 17632590..17633108 | 187..705 | 100 | -> | Minus |
X | 17633263..17633430 | 19..186 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:07 Download gff for
BO06818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17526453..17526493 | 706..747 | 97 | -> | Minus |
arm_X | 17526623..17527141 | 187..705 | 100 | -> | Minus |
arm_X | 17527296..17527463 | 19..186 | 100 | | Minus |
BO06818.5prime Sequence
758 bp (757 high quality bases) assembled on 2005-12-03
> BO06818.5prime
GAAGTTATCAGTCGACATGCTGACAAACTGTGCCTCCAAAACACTGGCCG
CCGTGCGCGCCAACATCCGGGCAATTGCCACCAGCAGTGCCCGGGCCAGC
GACAATCTGTTCGTCCATCGCGACACACCGGAGGATAATCCCAACATCCC
GTTCGAGTTCACGGCGGAGAACAAGAAGCGCGTGGAGGCCATACTCAGCA
TCTATCCGGAGGGGCACAAGCGCGGCGCCATGATCCCGCTGCTTGATCTG
GCACAGCGCCAGTACGGCTGGCTGCCAATCTCTGCCATGCACAAGGTGGC
CGAGATTCTCCAGTTGCCCAATATGCGCGTCTACGAGGTGGCCACTTTCT
ATACGATGTTCATGCGCAAGCCCACTGGCAAGTATCACATCCAGGTGTGC
ACCACCACACCATGCTGGCTCCGCGGATCGGACGACATCCTGGAGACCTG
CAAGAAGCAGCTGGGCATCGGCGTCGGCGACACCACCAAGGACAGGAAGT
TCACCATCTCGGAGGTCGAGTGCTTGGGCGCCTGTGTCAATGCGCCAATG
GTGGCGATCAACGATGACTACTATGAGGATCTGACATCCAAGGACATGCA
GGACATCCTGAACGACCTGAAGGCGGATAAGATATCGCCCCCTGGGCCAC
GCAACGGACGCTTTGCCAGCGAGCCAAAGGGCGAGCCCACTTCCCTGAGC
GAGGAGCCCAAGGGTCCTGGCTTTGGTCTGCAGGCCGGTCTGGCAAGCTT
TCTAGACC
BO06818.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5703-PA | 729 | CG5703-RA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5703-RB | 906 | CG5703-RB | 102..827 | 17..742 | 3630 | 100 | Plus |
CG5703-RA | 1064 | CG5703-RA | 260..985 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17632589..17633109 | 55..575 | 2605 | 100 | Plus |
X | 23542271 | X | 17633263..17633430 | 575..742 | 840 | 100 | Plus |
X | 23542271 | X | 17632422..17632460 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:40:03 has no hits.
BO06818.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:27 Download gff for
BO06818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-PA | 1..729 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:51 Download gff for
BO06818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-PA | 1..729 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:20:06 Download gff for
BO06818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 258..985 | 14..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:20:53 Download gff for
BO06818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 258..985 | 14..742 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:20:53 Download gff for
BO06818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17632420..17632460 | 14..55 | 97 | -> | Plus |
X | 17632590..17633108 | 56..574 | 100 | -> | Plus |
X | 17633263..17633430 | 575..742 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:20:06 Download gff for
BO06818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17526453..17526493 | 14..55 | 97 | -> | Plus |
arm_X | 17526623..17527141 | 56..574 | 100 | -> | Plus |
arm_X | 17527296..17527463 | 575..742 | 100 | | Plus |
BO06818.complete Sequence
760 bp (760 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630545
> BO06818.complete
GAAGTTATCAGTCGACATGCTGACAAACTGTGCCTCCAAAACACTGGCCG
CCGTGCGCGCCAACATCCGGGCAATTGCCACCAGCAGTGCCCGGGCCAGC
GACAATCTGTTCGTCCATCGCGACACACCGGAGGATAATCCCAACATCCC
GTTCGAGTTCACGGCGGAGAACAAGAAGCGCGTGGAGGCCATACTCAGCA
TCTATCCGGAGGGGCACAAGCGCGGCGCCATGATCCCGCTGCTTGATCTG
GCACAGCGCCAGTACGGCTGGCTGCCAATCTCTGCCATGCACAAGGTGGC
CGAGATTCTCCAGTTGCCCAATATGCGCGTCTACGAGGTGGCCACTTTCT
ATACGATGTTCATGCGCAAGCCCACTGGCAAGTATCACATCCAGGTGTGC
ACCACCACACCATGCTGGCTCCGCGGATCGGACGACATCCTGGAGACCTG
CAAGAAGCAGCTGGGCATCGGCGTCGGCGACACCACCAAGGACAGGAAGT
TCACCATCTCGGAGGTCGAGTGCTTGGGCGCCTGTGTCAATGCGCCAATG
GTGGCGATCAACGATGACTACTATGAGGATCTGACATCCAAGGACATGCA
GGACATCCTGAACGACCTGAAGGCGGATAAGATATCGCCCCCTGGGCCAC
GCAACGGACGCTTTGCCAGCGAGCCAAAGGGCGAGCCCACTTCCCTGAGC
GAGGAGCCCAAGGGTCCTGGCTTTGGTCTGCAGGCCGGTCTGGCAAGCTT
TCTAGACCAT
BO06818.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5703-RB | 729 | CG5703-PB | 1..726 | 17..742 | 3630 | 100 | Plus |
CG5703-RA | 729 | CG5703-PA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5703-RB | 906 | CG5703-RB | 102..827 | 17..742 | 3630 | 100 | Plus |
CG5703-RA | 1064 | CG5703-RA | 260..985 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17632589..17633109 | 55..575 | 2605 | 100 | Plus |
X | 23542271 | X | 17633263..17633430 | 575..742 | 840 | 100 | Plus |
X | 23542271 | X | 17632422..17632460 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:24:36 has no hits.
BO06818.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:58 Download gff for
BO06818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 1..729 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:10 Download gff for
BO06818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 258..985 | 14..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:39 Download gff for
BO06818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 260..985 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:58 Download gff for
BO06818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 258..985 | 14..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:02 Download gff for
BO06818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5703-RA | 260..985 | 17..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:02 Download gff for
BO06818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17632422..17632460 | 17..55 | 100 | -> | Plus |
X | 17632590..17633108 | 56..574 | 100 | -> | Plus |
X | 17633263..17633430 | 575..744 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:39 Download gff for
BO06818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17526455..17526493 | 17..55 | 100 | -> | Plus |
arm_X | 17526623..17527141 | 56..574 | 100 | -> | Plus |
arm_X | 17527296..17527463 | 575..744 | 98 | | Plus |
BO06818.pep Sequence
Translation from 16 to 760
> BO06818.pep
MLTNCASKTLAAVRANIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTA
ENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILQL
PNMRVYEVATFYTMFMRKPTGKYHIQVCTTTPCWLRGSDDILETCKKQLG
IGVGDTTKDRKFTISEVECLGACVNAPMVAINDDYYEDLTSKDMQDILND
LKADKISPPGPRNGRFASEPKGEPTSLSEEPKGPGFGLQAGLASFLDH
BO06818.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5703-PB | 242 | CG5703-PB | 1..242 | 1..242 | 1276 | 100 | Plus |
CG5703-PA | 242 | CG5703-PA | 1..242 | 1..242 | 1276 | 100 | Plus |
CG6485-PA | 238 | CG6485-PA | 32..227 | 44..239 | 600 | 55.6 | Plus |