Clone BO06818 Report

Search the DGRC for BO06818

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG5703-RA
Protein status:BO06818.pep: validated full length
Sequenced Size:760

Clone Sequence Records

BO06818.3prime Sequence

758 bp (757 high quality bases) assembled on 2005-12-03

> BO06818.3prime
ATGGTCTAGAAAGCTTGCCAGACCGGCCTGCAGACCAAAGCCAGGACCCT
TGGGCTCCTCGCTCAGGGAAGTGGGCTCGCCCTTTGGCTCGCTGGCAAAG
CGTCCGTTGCGTGGCCCAGGGGGCGATATCTTATCCGCCTTCAGGTCGTT
CAGGATGTCCTGCATGTCCTTGGATGTCAGATCCTCATAGTAGTCATCGT
TGATCGCCACCATTGGCGCATTGACACAGGCGCCCAAGCACTCGACCTCC
GAGATGGTGAACTTCCTGTCCTTGGTGGTGTCGCCGACGCCGATGCCCAG
CTGCTTCTTGCAGGTCTCCAGGATGTCGTCCGATCCGCGGAGCCAGCATG
GTGTGGTGGTGCACACCTGGATGTGATACTTGCCAGTGGGCTTGCGCATG
AACATCGTATAGAAAGTGGCCACCTCGTAGACGCGCATATTGGGCAACTG
GAGAATCTCGGCCACCTTGTGCATGGCAGAGATTGGCAGCCAGCCGTACT
GGCGCTGTGCCAGATCAAGCAGCGGGATCATGGCGCCGCGCTTGTGCCCC
TCCGGATAGATGCTGAGTATGGCCTCCACGCGCTTCTTGTTCTCCGCCGT
GAACTCGAACGGGATGTTGGGATTATCCTCCGGTGTGTCGCGATGGACGA
ACAGATTGTCGCTGGCCCGGGCACTGCTGGTGGCAATTGCCCGGATGTTG
GCGCGCACGGCGGCCAGTGTTTTGGAGGCACAGTTTGTCAGCATGTCGAC
TGATAACT

BO06818.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5703-PA 729 CG5703-RA 1..726 744..19 3630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5703-RB 906 CG5703-RB 102..827 744..19 3630 100 Minus
CG5703-RA 1064 CG5703-RA 260..985 744..19 3630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17632589..17633109 706..186 2605 100 Minus
X 23542271 X 17633263..17633430 186..19 840 100 Minus
X 23542271 X 17632422..17632460 744..706 195 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:07:30 has no hits.

BO06818.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:26 Download gff for BO06818.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-PA 1..729 18..744 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:50 Download gff for BO06818.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-PA 1..729 18..744 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:07 Download gff for BO06818.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 258..985 19..747 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:56:04 Download gff for BO06818.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 258..985 19..747 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:56:04 Download gff for BO06818.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17632420..17632460 706..747 97 -> Minus
X 17632590..17633108 187..705 100 -> Minus
X 17633263..17633430 19..186 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:07 Download gff for BO06818.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17526453..17526493 706..747 97 -> Minus
arm_X 17526623..17527141 187..705 100 -> Minus
arm_X 17527296..17527463 19..186 100   Minus

BO06818.5prime Sequence

758 bp (757 high quality bases) assembled on 2005-12-03

> BO06818.5prime
GAAGTTATCAGTCGACATGCTGACAAACTGTGCCTCCAAAACACTGGCCG
CCGTGCGCGCCAACATCCGGGCAATTGCCACCAGCAGTGCCCGGGCCAGC
GACAATCTGTTCGTCCATCGCGACACACCGGAGGATAATCCCAACATCCC
GTTCGAGTTCACGGCGGAGAACAAGAAGCGCGTGGAGGCCATACTCAGCA
TCTATCCGGAGGGGCACAAGCGCGGCGCCATGATCCCGCTGCTTGATCTG
GCACAGCGCCAGTACGGCTGGCTGCCAATCTCTGCCATGCACAAGGTGGC
CGAGATTCTCCAGTTGCCCAATATGCGCGTCTACGAGGTGGCCACTTTCT
ATACGATGTTCATGCGCAAGCCCACTGGCAAGTATCACATCCAGGTGTGC
ACCACCACACCATGCTGGCTCCGCGGATCGGACGACATCCTGGAGACCTG
CAAGAAGCAGCTGGGCATCGGCGTCGGCGACACCACCAAGGACAGGAAGT
TCACCATCTCGGAGGTCGAGTGCTTGGGCGCCTGTGTCAATGCGCCAATG
GTGGCGATCAACGATGACTACTATGAGGATCTGACATCCAAGGACATGCA
GGACATCCTGAACGACCTGAAGGCGGATAAGATATCGCCCCCTGGGCCAC
GCAACGGACGCTTTGCCAGCGAGCCAAAGGGCGAGCCCACTTCCCTGAGC
GAGGAGCCCAAGGGTCCTGGCTTTGGTCTGCAGGCCGGTCTGGCAAGCTT
TCTAGACC

BO06818.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5703-PA 729 CG5703-RA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5703-RB 906 CG5703-RB 102..827 17..742 3630 100 Plus
CG5703-RA 1064 CG5703-RA 260..985 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17632589..17633109 55..575 2605 100 Plus
X 23542271 X 17633263..17633430 575..742 840 100 Plus
X 23542271 X 17632422..17632460 17..55 195 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:40:03 has no hits.

BO06818.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:27 Download gff for BO06818.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-PA 1..729 17..743 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:51 Download gff for BO06818.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-PA 1..729 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:20:06 Download gff for BO06818.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 258..985 14..742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:20:53 Download gff for BO06818.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 258..985 14..742 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:20:53 Download gff for BO06818.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17632420..17632460 14..55 97 -> Plus
X 17632590..17633108 56..574 100 -> Plus
X 17633263..17633430 575..742 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:20:06 Download gff for BO06818.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17526453..17526493 14..55 97 -> Plus
arm_X 17526623..17527141 56..574 100 -> Plus
arm_X 17527296..17527463 575..742 100   Plus

BO06818.complete Sequence

760 bp (760 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630545

> BO06818.complete
GAAGTTATCAGTCGACATGCTGACAAACTGTGCCTCCAAAACACTGGCCG
CCGTGCGCGCCAACATCCGGGCAATTGCCACCAGCAGTGCCCGGGCCAGC
GACAATCTGTTCGTCCATCGCGACACACCGGAGGATAATCCCAACATCCC
GTTCGAGTTCACGGCGGAGAACAAGAAGCGCGTGGAGGCCATACTCAGCA
TCTATCCGGAGGGGCACAAGCGCGGCGCCATGATCCCGCTGCTTGATCTG
GCACAGCGCCAGTACGGCTGGCTGCCAATCTCTGCCATGCACAAGGTGGC
CGAGATTCTCCAGTTGCCCAATATGCGCGTCTACGAGGTGGCCACTTTCT
ATACGATGTTCATGCGCAAGCCCACTGGCAAGTATCACATCCAGGTGTGC
ACCACCACACCATGCTGGCTCCGCGGATCGGACGACATCCTGGAGACCTG
CAAGAAGCAGCTGGGCATCGGCGTCGGCGACACCACCAAGGACAGGAAGT
TCACCATCTCGGAGGTCGAGTGCTTGGGCGCCTGTGTCAATGCGCCAATG
GTGGCGATCAACGATGACTACTATGAGGATCTGACATCCAAGGACATGCA
GGACATCCTGAACGACCTGAAGGCGGATAAGATATCGCCCCCTGGGCCAC
GCAACGGACGCTTTGCCAGCGAGCCAAAGGGCGAGCCCACTTCCCTGAGC
GAGGAGCCCAAGGGTCCTGGCTTTGGTCTGCAGGCCGGTCTGGCAAGCTT
TCTAGACCAT

BO06818.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5703-RB 729 CG5703-PB 1..726 17..742 3630 100 Plus
CG5703-RA 729 CG5703-PA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5703-RB 906 CG5703-RB 102..827 17..742 3630 100 Plus
CG5703-RA 1064 CG5703-RA 260..985 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17632589..17633109 55..575 2605 100 Plus
X 23542271 X 17633263..17633430 575..742 840 100 Plus
X 23542271 X 17632422..17632460 17..55 195 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:24:36 has no hits.

BO06818.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:58 Download gff for BO06818.complete
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 1..729 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:10 Download gff for BO06818.complete
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 258..985 14..742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:39 Download gff for BO06818.complete
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 260..985 17..744 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:58 Download gff for BO06818.complete
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 258..985 14..742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:02 Download gff for BO06818.complete
Subject Subject Range Query Range Percent Splice Strand
CG5703-RA 260..985 17..744 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:02 Download gff for BO06818.complete
Subject Subject Range Query Range Percent Splice Strand
X 17632422..17632460 17..55 100 -> Plus
X 17632590..17633108 56..574 100 -> Plus
X 17633263..17633430 575..744 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:39 Download gff for BO06818.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17526455..17526493 17..55 100 -> Plus
arm_X 17526623..17527141 56..574 100 -> Plus
arm_X 17527296..17527463 575..744 98   Plus

BO06818.pep Sequence

Translation from 16 to 760

> BO06818.pep
MLTNCASKTLAAVRANIRAIATSSARASDNLFVHRDTPEDNPNIPFEFTA
ENKKRVEAILSIYPEGHKRGAMIPLLDLAQRQYGWLPISAMHKVAEILQL
PNMRVYEVATFYTMFMRKPTGKYHIQVCTTTPCWLRGSDDILETCKKQLG
IGVGDTTKDRKFTISEVECLGACVNAPMVAINDDYYEDLTSKDMQDILND
LKADKISPPGPRNGRFASEPKGEPTSLSEEPKGPGFGLQAGLASFLDH

BO06818.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5703-PB 242 CG5703-PB 1..242 1..242 1276 100 Plus
CG5703-PA 242 CG5703-PA 1..242 1..242 1276 100 Plus
CG6485-PA 238 CG6485-PA 32..227 44..239 600 55.6 Plus