Clone BO06821 Report

Search the DGRC for BO06821

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG9312-RA
Protein status:BO06821.pep: validated full length
Sequenced Size:667

Clone Sequence Records

BO06821.3prime Sequence

665 bp (664 high quality bases) assembled on 2005-12-03

> BO06821.3prime
ATGGTCTAGAAAGCTTGCGCCGATGCGTATGTCGATGGCCAAGGGTGCCT
CTTCGGTGCTGGAAGAGGTGGGTGCCAAGGTAGTCGATCTGGTGGTGCTG
GTGGTTGTCGTGGTGGTGGTGCTGGTGCGTGAGGAAGGCGTTACTGGAGC
TGCGGGTGGTGGAGCTAAGCTGCTTGAGCTCGCTTGCTTTGTAAGCTCCT
TGATTCCCCCTTTATTTTCTTCAAAAGGCTCCAGTGGCGCTTCAAATGGC
CGCCGGTGCTCCTCATATTCCGGTGGTCCAAAGGCATTTGGAAACGGTTG
GAAGTCATGTGGCTCGAATCTGTGGTGGTGGCCTTGGGGAGGTGGTCCTC
CATGCTCAAATCCAAACCCGAATCTGGCAGGGTGATGGCAGTCTGGACCC
GGAAAATGGTGATCCCAGTGCCGCTTATGGTGTCTGTGCCCATGGTAATT
GCCATCCTCGTGATGGCGACGATGCCGATTGTGCTGGACGTGGACCTGGC
TAACAACGGGCGACGATTCCTCGGCCAATAAATCGTCACTGGTGAAGGCA
GCATTCTCGATGCCTGGGAACGGAGCAGCCTGGAGGAGCTGCAGACTCTG
GGTGCTTATCACAGCGAACAGCGCCAGACGGGCGGCAACTGAGGCTAACA
TGTCGACTGATAACT

BO06821.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9312-PA 636 CG9312-RA 1..633 651..19 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9312-RA 807 CG9312-RA 105..737 651..19 3165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13766106..13766437 550..219 1660 100 Minus
3R 32079331 3R 13766832..13767033 220..19 1010 100 Minus
3R 32079331 3R 13765945..13766021 627..551 385 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:24:32 has no hits.

BO06821.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:32 Download gff for BO06821.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-PA 1..636 16..651 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:58 Download gff for BO06821.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-PA 1..636 16..651 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:10 Download gff for BO06821.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 101..737 19..659 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:35:20 Download gff for BO06821.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 101..737 19..659 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:35:20 Download gff for BO06821.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13766106..13766437 219..550 100 -> Minus
3R 13766834..13767033 19..218 100   Minus
3R 13765945..13766021 551..627 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:10 Download gff for BO06821.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9591667..9591743 551..627 100 -> Minus
arm_3R 9591828..9592159 219..550 100 -> Minus
arm_3R 9592556..9592755 19..218 100   Minus

BO06821.5prime Sequence

665 bp (664 high quality bases) assembled on 2005-12-03

> BO06821.5prime
GAAGTTATCAGTCGACATGTTAGCCTCAGTTGCCGCCCGTCTGGCGCTGT
TCGCTGTGATAAGCACCCAGAGTCTGCAGCTCCTCCAGGCTGCTCCGTTC
CCAGGCATCGAGAATGCTGCCTTCACCAGTGACGATTTATTGGCCGAGGA
ATCGTCGCCCGTTGTTAGCCAGGTCCACGTCCAGCACAATCGGCATCGTC
GCCATCACGAGGATGGCAATTACCATGGGCACAGACACCATAAGCGGCAC
TGGGATCACCATTTTCCGGGTCCAGACTGCCATCACCCTGCCAGATTCGG
GTTTGGATTTGAGCATGGAGGACCACCTCCCCAAGGCCACCACCACAGAT
TCGAGCCACATGACTTCCAACCGTTTCCAAATGCCTTTGGACCACCGGAA
TATGAGGAGCACCGGCGGCCATTTGAAGCGCCACTGGAGCCTTTTGAAGA
AAATAAAGGGGGAATCAAGGAGCTTACAAAGCAAGCGAGCTCAAGCAGCT
TAGCTCCACCACCCGCAGCTCCAGTAACGCCTTCCTCACGCACCAGCACC
ACCACCACGACAACCACCAGCACCACCAGATCGACTACCTTGGCACCCAC
CTCTTCCAGCACCGAAGAGGCACCCTTGGCCATCGACATACGCATCGGCG
CAAGCTTTCTAGACC

BO06821.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9312-PA 636 CG9312-RA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9312-RA 807 CG9312-RA 105..737 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13766106..13766437 118..449 1660 100 Plus
3R 32079331 3R 13766832..13767033 448..649 1010 100 Plus
3R 32079331 3R 13765945..13766021 41..117 385 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:20:25 has no hits.

BO06821.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:34 Download gff for BO06821.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-PA 1..636 17..652 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:00 Download gff for BO06821.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-PA 1..636 17..652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:50 Download gff for BO06821.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 101..737 9..649 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:43 Download gff for BO06821.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 101..737 9..649 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:43 Download gff for BO06821.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13765945..13766021 41..117 100 -> Plus
3R 13766106..13766437 118..449 100 -> Plus
3R 13766834..13767033 450..649 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:50 Download gff for BO06821.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9591667..9591743 41..117 100 -> Plus
arm_3R 9591828..9592159 118..449 100 -> Plus
arm_3R 9592556..9592755 450..649 100   Plus

BO06821.complete Sequence

667 bp (667 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630546

> BO06821.complete
GAAGTTATCAGTCGACATGTTAGCCTCAGTTGCCGCCCGTCTGGCGCTGT
TCGCTGTGATAAGCACCCAGAGTCTGCAGCTCCTCCAGGCTGCTCCGTTC
CCAGGCATCGAGAATGCTGCCTTCACCAGTGACGATTTATTGGCCGAGGA
ATCGTCGCCCGTTGTTAGCCAGGTCCACGTCCAGCACAATCGGCATCGTC
GCCATCACGAGGATGGCAATTACCATGGGCACAGACACCATAAGCGGCAC
TGGGATCACCATTTTCCGGGTCCAGACTGCCATCACCCTGCCAGATTCGG
GTTTGGATTTGAGCATGGAGGACCACCTCCCCAAGGCCACCACCACAGAT
TCGAGCCACATGACTTCCAACCGTTTCCAAATGCCTTTGGACCACCGGAA
TATGAGGAGCACCGGCGGCCATTTGAAGCGCCACTGGAGCCTTTTGAAGA
AAATAAAGGGGGAATCAAGGAGCTTACAAAGCAAGCGAGCTCAAGCAGCT
TAGCTCCACCACCCGCAGCTCCAGTAACGCCTTCCTCACGCACCAGCACC
ACCACCACGACAACCACCAGCACCACCAGATCGACTACCTTGGCACCCAC
CTCTTCCAGCACCGAAGAGGCACCCTTGGCCATCGACATACGCATCGGCG
CAAGCTTTCTAGACCAT

BO06821.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9312-RA 636 CG9312-PA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9312-RA 807 CG9312-RA 105..737 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13766106..13766437 118..449 1660 100 Plus
3R 32079331 3R 13766832..13767033 448..649 1010 100 Plus
3R 32079331 3R 13765945..13766021 41..117 385 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:37:31 has no hits.

BO06821.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:59 Download gff for BO06821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 1..636 17..652 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:12 Download gff for BO06821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 82..718 9..649 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:06 Download gff for BO06821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 110..737 22..651 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:59 Download gff for BO06821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 82..718 9..649 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:43 Download gff for BO06821.complete
Subject Subject Range Query Range Percent Splice Strand
CG9312-RA 110..737 22..651 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:43 Download gff for BO06821.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13765865..13765883 22..40 100 -> Plus
3R 13765945..13766021 41..117 100 -> Plus
3R 13766106..13766437 118..449 100 -> Plus
3R 13766834..13767033 450..651 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:06 Download gff for BO06821.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9591587..9591605 22..40 100 -> Plus
arm_3R 9591667..9591743 41..117 100 -> Plus
arm_3R 9591828..9592159 118..449 100 -> Plus
arm_3R 9592556..9592755 450..651 99   Plus

BO06821.pep Sequence

Translation from 16 to 667

> BO06821.pep
MLASVAARLALFAVISTQSLQLLQAAPFPGIENAAFTSDDLLAEESSPVV
SQVHVQHNRHRRHHEDGNYHGHRHHKRHWDHHFPGPDCHHPARFGFGFEH
GGPPPQGHHHRFEPHDFQPFPNAFGPPEYEEHRRPFEAPLEPFEENKGGI
KELTKQASSSSLAPPPAAPVTPSSRTSTTTTTTTSTTRSTTLAPTSSSTE
EAPLAIDIRIGASFLDH

BO06821.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9312-PA 211 CG9312-PA 1..211 1..211 1150 100 Plus