Clone Sequence Records
BO06821.3prime Sequence
665 bp (664 high quality bases) assembled on 2005-12-03
> BO06821.3prime
ATGGTCTAGAAAGCTTGCGCCGATGCGTATGTCGATGGCCAAGGGTGCCT
CTTCGGTGCTGGAAGAGGTGGGTGCCAAGGTAGTCGATCTGGTGGTGCTG
GTGGTTGTCGTGGTGGTGGTGCTGGTGCGTGAGGAAGGCGTTACTGGAGC
TGCGGGTGGTGGAGCTAAGCTGCTTGAGCTCGCTTGCTTTGTAAGCTCCT
TGATTCCCCCTTTATTTTCTTCAAAAGGCTCCAGTGGCGCTTCAAATGGC
CGCCGGTGCTCCTCATATTCCGGTGGTCCAAAGGCATTTGGAAACGGTTG
GAAGTCATGTGGCTCGAATCTGTGGTGGTGGCCTTGGGGAGGTGGTCCTC
CATGCTCAAATCCAAACCCGAATCTGGCAGGGTGATGGCAGTCTGGACCC
GGAAAATGGTGATCCCAGTGCCGCTTATGGTGTCTGTGCCCATGGTAATT
GCCATCCTCGTGATGGCGACGATGCCGATTGTGCTGGACGTGGACCTGGC
TAACAACGGGCGACGATTCCTCGGCCAATAAATCGTCACTGGTGAAGGCA
GCATTCTCGATGCCTGGGAACGGAGCAGCCTGGAGGAGCTGCAGACTCTG
GGTGCTTATCACAGCGAACAGCGCCAGACGGGCGGCAACTGAGGCTAACA
TGTCGACTGATAACT
BO06821.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9312-PA | 636 | CG9312-RA | 1..633 | 651..19 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:24:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9312-RA | 807 | CG9312-RA | 105..737 | 651..19 | 3165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13766106..13766437 | 550..219 | 1660 | 100 | Minus |
3R | 32079331 | 3R | 13766832..13767033 | 220..19 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 13765945..13766021 | 627..551 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:24:32 has no hits.
BO06821.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:32 Download gff for
BO06821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9312-PA | 1..636 | 16..651 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:58 Download gff for
BO06821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9312-PA | 1..636 | 16..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:10 Download gff for
BO06821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9312-RA | 101..737 | 19..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:35:20 Download gff for
BO06821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9312-RA | 101..737 | 19..659 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:35:20 Download gff for
BO06821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13766106..13766437 | 219..550 | 100 | -> | Minus |
3R | 13766834..13767033 | 19..218 | 100 | | Minus |
3R | 13765945..13766021 | 551..627 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:10 Download gff for
BO06821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9591667..9591743 | 551..627 | 100 | -> | Minus |
arm_3R | 9591828..9592159 | 219..550 | 100 | -> | Minus |
arm_3R | 9592556..9592755 | 19..218 | 100 | | Minus |
BO06821.5prime Sequence
665 bp (664 high quality bases) assembled on 2005-12-03
> BO06821.5prime
GAAGTTATCAGTCGACATGTTAGCCTCAGTTGCCGCCCGTCTGGCGCTGT
TCGCTGTGATAAGCACCCAGAGTCTGCAGCTCCTCCAGGCTGCTCCGTTC
CCAGGCATCGAGAATGCTGCCTTCACCAGTGACGATTTATTGGCCGAGGA
ATCGTCGCCCGTTGTTAGCCAGGTCCACGTCCAGCACAATCGGCATCGTC
GCCATCACGAGGATGGCAATTACCATGGGCACAGACACCATAAGCGGCAC
TGGGATCACCATTTTCCGGGTCCAGACTGCCATCACCCTGCCAGATTCGG
GTTTGGATTTGAGCATGGAGGACCACCTCCCCAAGGCCACCACCACAGAT
TCGAGCCACATGACTTCCAACCGTTTCCAAATGCCTTTGGACCACCGGAA
TATGAGGAGCACCGGCGGCCATTTGAAGCGCCACTGGAGCCTTTTGAAGA
AAATAAAGGGGGAATCAAGGAGCTTACAAAGCAAGCGAGCTCAAGCAGCT
TAGCTCCACCACCCGCAGCTCCAGTAACGCCTTCCTCACGCACCAGCACC
ACCACCACGACAACCACCAGCACCACCAGATCGACTACCTTGGCACCCAC
CTCTTCCAGCACCGAAGAGGCACCCTTGGCCATCGACATACGCATCGGCG
CAAGCTTTCTAGACC
BO06821.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9312-PA | 636 | CG9312-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9312-RA | 807 | CG9312-RA | 105..737 | 17..649 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13766106..13766437 | 118..449 | 1660 | 100 | Plus |
3R | 32079331 | 3R | 13766832..13767033 | 448..649 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 13765945..13766021 | 41..117 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:20:25 has no hits.
BO06821.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:34 Download gff for
BO06821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9312-PA | 1..636 | 17..652 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:00 Download gff for
BO06821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9312-PA | 1..636 | 17..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:50 Download gff for
BO06821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9312-RA | 101..737 | 9..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:43 Download gff for
BO06821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9312-RA | 101..737 | 9..649 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:43 Download gff for
BO06821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13765945..13766021 | 41..117 | 100 | -> | Plus |
3R | 13766106..13766437 | 118..449 | 100 | -> | Plus |
3R | 13766834..13767033 | 450..649 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:50 Download gff for
BO06821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9591667..9591743 | 41..117 | 100 | -> | Plus |
arm_3R | 9591828..9592159 | 118..449 | 100 | -> | Plus |
arm_3R | 9592556..9592755 | 450..649 | 100 | | Plus |
BO06821.complete Sequence
667 bp (667 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630546
> BO06821.complete
GAAGTTATCAGTCGACATGTTAGCCTCAGTTGCCGCCCGTCTGGCGCTGT
TCGCTGTGATAAGCACCCAGAGTCTGCAGCTCCTCCAGGCTGCTCCGTTC
CCAGGCATCGAGAATGCTGCCTTCACCAGTGACGATTTATTGGCCGAGGA
ATCGTCGCCCGTTGTTAGCCAGGTCCACGTCCAGCACAATCGGCATCGTC
GCCATCACGAGGATGGCAATTACCATGGGCACAGACACCATAAGCGGCAC
TGGGATCACCATTTTCCGGGTCCAGACTGCCATCACCCTGCCAGATTCGG
GTTTGGATTTGAGCATGGAGGACCACCTCCCCAAGGCCACCACCACAGAT
TCGAGCCACATGACTTCCAACCGTTTCCAAATGCCTTTGGACCACCGGAA
TATGAGGAGCACCGGCGGCCATTTGAAGCGCCACTGGAGCCTTTTGAAGA
AAATAAAGGGGGAATCAAGGAGCTTACAAAGCAAGCGAGCTCAAGCAGCT
TAGCTCCACCACCCGCAGCTCCAGTAACGCCTTCCTCACGCACCAGCACC
ACCACCACGACAACCACCAGCACCACCAGATCGACTACCTTGGCACCCAC
CTCTTCCAGCACCGAAGAGGCACCCTTGGCCATCGACATACGCATCGGCG
CAAGCTTTCTAGACCAT
BO06821.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9312-RA | 636 | CG9312-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9312-RA | 807 | CG9312-RA | 105..737 | 17..649 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13766106..13766437 | 118..449 | 1660 | 100 | Plus |
3R | 32079331 | 3R | 13766832..13767033 | 448..649 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 13765945..13766021 | 41..117 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:37:31 has no hits.
BO06821.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:59 Download gff for
BO06821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9312-RA | 1..636 | 17..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:12 Download gff for
BO06821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9312-RA | 82..718 | 9..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:06 Download gff for
BO06821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9312-RA | 110..737 | 22..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:59 Download gff for
BO06821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9312-RA | 82..718 | 9..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:43 Download gff for
BO06821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9312-RA | 110..737 | 22..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:43 Download gff for
BO06821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13765865..13765883 | 22..40 | 100 | -> | Plus |
3R | 13765945..13766021 | 41..117 | 100 | -> | Plus |
3R | 13766106..13766437 | 118..449 | 100 | -> | Plus |
3R | 13766834..13767033 | 450..651 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:06 Download gff for
BO06821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9591587..9591605 | 22..40 | 100 | -> | Plus |
arm_3R | 9591667..9591743 | 41..117 | 100 | -> | Plus |
arm_3R | 9591828..9592159 | 118..449 | 100 | -> | Plus |
arm_3R | 9592556..9592755 | 450..651 | 99 | | Plus |
BO06821.pep Sequence
Translation from 16 to 667
> BO06821.pep
MLASVAARLALFAVISTQSLQLLQAAPFPGIENAAFTSDDLLAEESSPVV
SQVHVQHNRHRRHHEDGNYHGHRHHKRHWDHHFPGPDCHHPARFGFGFEH
GGPPPQGHHHRFEPHDFQPFPNAFGPPEYEEHRRPFEAPLEPFEENKGGI
KELTKQASSSSLAPPPAAPVTPSSRTSTTTTTTTSTTRSTTLAPTSSSTE
EAPLAIDIRIGASFLDH
BO06821.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9312-PA | 211 | CG9312-PA | 1..211 | 1..211 | 1150 | 100 | Plus |