Clone BO06823 Report

Search the DGRC for BO06823

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptdj-1beta-RA
Protein status:BO06823.pep: validated full length
Sequenced Size:649

Clone Sequence Records

BO06823.5prime Sequence

647 bp (646 high quality bases) assembled on 2005-12-03

> BO06823.5prime
GAAGTTATCAGTCGACATGGTTTTCTTTGGATTTCCTCAAATTTCAAGGC
ACTTTTCTAAGTTTACCAAGATGTCGAAAAGCGCGCTGGTGATTTTGGCT
CCCGGAGCGGAGGAGATGGAGTTCATCATAGCCGCCGACGTTCTGAGAAG
GGCGGGCATCAAGGTCACCGTAGCCGGTTTGAATGGCGGGGAAGCGGTGA
AGTGCTCGCGGGATGTGCAGATCCTGCCGGACACCTCGCTGGCCCAGGTT
GCCTCGGATAAGTTCGATGTGGTGGTGCTGCCCGGCGGACTGGGTGGCTC
CAATGCCATGGGGGAGTCCTCGCTGGTCGGTGACTTGCTGCGCAGCCAGG
AGTCTGGTGGCGGACTCATCGCCGCCATCTGTGCCGCGCCCACCGTTTTG
GCCAAGCACGGCGTCGCCTCCGGGAAATCCCTCACCTCGTATCCCTCAAT
GAAGCCCCAGCTGGTGAATAACTATAGCTATGTGGACGACAAGACGGTGG
TCAAGGATGGCAATCTGATCACCAGTCGAGGTCCTGGCACCGCCTACGAG
TTCGCCCTCAAAATCGCCGAGGAGCTGGCGGGCAAGGAGAAAGTCCAGGA
GGTGGCCAAGGGTCTTCTTGTGGCCTACAACGCAAGCTTTCTAGACC

BO06823.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1349-PA 618 dj-1beta-RA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
dj-1beta-RA 733 CG1349-RA 27..642 16..631 3080 100 Plus
DJ-1alpha-RA 735 CG6646-RA 115..581 77..540 305 72.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30807348..30807671 158..481 1605 99.7 Plus
3R 32079331 3R 30807732..30807887 476..631 780 100 Plus
3R 32079331 3R 30807143..30807284 16..157 710 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:29:37 has no hits.

BO06823.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:37 Download gff for BO06823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1349-PA 1..618 17..635 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:04 Download gff for BO06823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1349-PA 1..618 17..635 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:02:22 Download gff for BO06823.5prime
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 21..645 6..635 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:40 Download gff for BO06823.5prime
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 21..645 6..635 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:40 Download gff for BO06823.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30807137..30807284 6..157 97 -> Plus
3R 30807734..30807890 478..635 98   Plus
3R 30807348..30807667 158..477 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:02:22 Download gff for BO06823.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26632859..26633006 6..157 97 -> Plus
arm_3R 26633070..26633389 158..477 100 -> Plus
arm_3R 26633456..26633612 478..635 98   Plus

BO06823.3prime Sequence

647 bp (646 high quality bases) assembled on 2005-12-03

> BO06823.3prime
ATGGTCTAGAAAGCTTGCGTTGTAGGCCACAAGAAGACCCTTGGCCACCT
CCTGGACTTTCTCCTTGCCCGCCAGCTCCTCGGCGATTTTGAGGGCGAAC
TCGTAGGCGGTGCCAGGACCTCGACTGGTGATCAGATTGCCATCCTTGAC
CACCGTCTTGTCGTCCACATAGCTATAGTTATTCACCAGCTGGGGCTTCA
TTGAGGGATACGAGGTGAGGGATTTCCCGGAGGCGACGCCGTGCTTGGCC
AAAACGGTGGGCGCGGCACAGATGGCGGCGATGAGTCCGCCACCAGACTC
CTGGCTGCGCAGCAAGTCACCGACCAGCGAGGACTCCCCCATGGCATTGG
AGCCACCCAGTCCGCCGGGCAGCACCACCACATCGAACTTATCCGAGGCA
ACCTGGGCCAGCGAGGTGTCCGGCAGGATCTGCACATCCCGCGAGCACTT
CACCGCTTCCCCGCCATTCAAACCGGCTACGGTGACCTTGATGCCCGCCC
TTCTCAGAACGTCGGCGGCTATGATGAACTCCATCTCCTCCGCTCCGGGA
GCCAAAATCACCAGCGCGCTTTTCGACATCTTGGTAAACTTAGAAAAGTG
CCTTGAAATTTGAGGAAATCCAAAGAAAACCATGTCGACTGATAACT

BO06823.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1349-PA 618 dj-1beta-RA 1..615 633..19 3075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
dj-1beta-RA 733 CG1349-RA 27..642 634..19 3080 100 Minus
DJ-1alpha-RA 735 CG6646-RA 115..581 573..110 305 72.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30807348..30807671 492..169 1605 99.7 Minus
3R 32079331 3R 30807732..30807887 174..19 780 100 Minus
3R 32079331 3R 30807143..30807284 634..493 710 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:24:52 has no hits.

BO06823.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:36 Download gff for BO06823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1349-PA 1..618 15..633 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:03 Download gff for BO06823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1349-PA 1..618 15..633 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:14 Download gff for BO06823.3prime
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 21..645 15..644 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:35:32 Download gff for BO06823.3prime
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 21..645 15..644 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:35:32 Download gff for BO06823.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30807137..30807284 493..644 97 -> Minus
3R 30807348..30807667 173..492 100 -> Minus
3R 30807734..30807890 15..172 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:14 Download gff for BO06823.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26632859..26633006 493..644 97 -> Minus
arm_3R 26633070..26633389 173..492 100 -> Minus
arm_3R 26633456..26633612 15..172 98   Minus

BO06823.complete Sequence

649 bp (649 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630547

> BO06823.complete
GAAGTTATCAGTCGACATGGTTTTCTTTGGATTTCCTCAAATTTCAAGGC
ACTTTTCTAAGTTTACCAAGATGTCGAAAAGCGCGCTGGTGATTTTGGCT
CCCGGAGCGGAGGAGATGGAGTTCATCATAGCCGCCGACGTTCTGAGAAG
GGCGGGCATCAAGGTCACCGTAGCCGGTTTGAATGGCGGGGAAGCGGTGA
AGTGCTCGCGGGATGTGCAGATCCTGCCGGACACCTCGCTGGCCCAGGTT
GCCTCGGATAAGTTCGATGTGGTGGTGCTGCCCGGCGGACTGGGTGGCTC
CAATGCCATGGGGGAGTCCTCGCTGGTCGGTGACTTGCTGCGCAGCCAGG
AGTCTGGTGGCGGACTCATCGCCGCCATCTGTGCCGCGCCCACCGTTTTG
GCCAAGCACGGCGTCGCCTCCGGGAAATCCCTCACCTCGTATCCCTCAAT
GAAGCCCCAGCTGGTGAATAACTATAGCTATGTGGACGACAAGACGGTGG
TCAAGGATGGCAATCTGATCACCAGTCGAGGTCCTGGCACCGCCTACGAG
TTCGCCCTCAAAATCGCCGAGGAGCTGGCGGGCAAGGAGAAAGTCCAGGA
GGTGGCCAAGGGTCTTCTTGTGGCCTACAACGCAAGCTTTCTAGACCAT

BO06823.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
dj-1beta-RA 618 CG1349-PA 1..615 17..631 3075 100 Plus
DJ-1alpha-RA 654 CG6646-PA 353..557 336..540 275 75.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
dj-1beta-RA 733 CG1349-RA 27..642 16..631 3080 100 Plus
DJ-1alpha-RA 735 CG6646-RA 377..581 336..540 275 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30807348..30807671 158..481 1605 99.7 Plus
3R 32079331 3R 30807732..30807887 476..631 780 100 Plus
3R 32079331 3R 30807143..30807284 16..157 710 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:05:03 has no hits.

BO06823.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:13 Download gff for BO06823.complete
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 1..618 17..635 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:27 Download gff for BO06823.complete
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 12..636 6..635 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:31 Download gff for BO06823.complete
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 28..642 17..633 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:14 Download gff for BO06823.complete
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 12..636 6..635 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:08 Download gff for BO06823.complete
Subject Subject Range Query Range Percent Splice Strand
dj-1beta-RA 28..642 17..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:08 Download gff for BO06823.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30807144..30807284 17..157 100 -> Plus
3R 30807348..30807667 158..477 100 -> Plus
3R 30807734..30807887 478..633 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:31 Download gff for BO06823.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26632866..26633006 17..157 100 -> Plus
arm_3R 26633070..26633389 158..477 100 -> Plus
arm_3R 26633456..26633609 478..633 98   Plus

BO06823.pep Sequence

Translation from 16 to 649

> BO06823.pep
MVFFGFPQISRHFSKFTKMSKSALVILAPGAEEMEFIIAADVLRRAGIKV
TVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGE
SSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYPSMKPQLV
NNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGL
LVAYNASFLDH

BO06823.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
dj-1beta-PA 205 CG1349-PA 1..205 1..205 1018 100 Plus
DJ-1alpha-PA 217 CG6646-PA 18..215 8..204 622 64.6 Plus