Clone Sequence Records
BO06824.3prime Sequence
870 bp (793 high quality bases) assembled on 2005-12-03
> BO06824.3prime
ATGGTCTAGAAAGCTTGCTTCGAATATATGGCTGTAGTGCTGCTGGTATA
CGTGTATGTAGTTCTCCTTCTCCTGCGGCGTCATCTGGGCTATCAGGTTG
TCGTCCAGTTGGTCGAGCGGATGCGGTCGTCCAGCCACTAGCACAGTGGG
CACATCGTCGTCCTCCTCCGCGGAATCTGAGTTGATATAATTGTCGAAGT
CGACATCAGGAATCTTGGAATTTTCGATGTCCTTTTCGTCGTCGCTGGAA
TCGCTAGAGTTGGCGTTCGATGAGCCCACTCGCATACCCTTCATATGCGG
CTCCTTCTGGCCCGGCTGCTTCTCATGCTGCAGCAGCACGGACATGATGT
CCTCGTTTTCCTTTCGGTTGCGATGCCCAGATCCGCTTGCCGTCTGCACC
GCATCGGCCGCGCCATCGGCAGCATCCGTGTCGGTTATCACAGTGCTCTC
TGTCATCCAAATGGGGCGCGACTTGCGCTCAATCACCGCATCCGAGGTGT
CGTCGCCGCCAATGGTGACGTCCACACGAGTTTCCTCCACGGCAAAGCCC
TGGTTTCTCGTCGCCTCACCCGACCACGCCATGCCGTCCGGTCGCGTGGC
GTTGGGTTTGTTCAGTCCTCGAATGGTGTCGATGTCCACGGGCTCCGGTT
CGAGCACCTCTGGCGCCAGCTTGATGCCCTCCACCTCACGGAGCAGGTCG
TACAGTGGCTGCAGCTGCTCGTTGAAGTGCGCTAGCATTAGGCGGGAGTC
TTTCTTGGGCATGGCGGCGCTGTCCTCCTCCACGGAACTGCCGCAGAAGG
TGCACCGGAACTCCAGCGTGGCCATGTCGAACAGCTGGTCCGCTTCGAGG
TCCGTGAATGTTTTGGAACA
BO06824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10415-PA | 1290 | TfIIEalpha-RA | 436..1287 | 870..19 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIEalpha-RA | 1622 | CG10415-RA | 632..1483 | 870..19 | 4260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11682747..11683407 | 870..210 | 3305 | 100 | Minus |
| 3L | 28110227 | 3L | 11683476..11683666 | 209..19 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:10:00 has no hits.
BO06824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:39 Download gff for
BO06824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10415-PA | 437..1290 | 16..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:06 Download gff for
BO06824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10415-PA | 437..1290 | 16..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:21 Download gff for
BO06824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEalpha-RA | 633..1483 | 19..869 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:37:47 Download gff for
BO06824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEalpha-RA | 633..1483 | 19..869 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:37:47 Download gff for
BO06824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11683476..11683666 | 19..209 | 100 | | Minus |
| 3L | 11682748..11683407 | 210..869 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:21 Download gff for
BO06824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11675848..11676507 | 210..869 | 100 | -> | Minus |
| arm_3L | 11676576..11676766 | 19..209 | 100 | | Minus |
BO06824.5prime Sequence
893 bp (760 high quality bases) assembled on 2005-12-03
> BO06824.5prime
GAAGTTATCAGTCGACATGTCGTCGACATCGACGGCTGCAGCGAACGCAG
CGCCAGCGAAGACGGAGGTGCGGTACGTGACCGAGGTGCCCAGCAGTCTG
AAGCAACTGGCGCGCCTCGTGGTCCGTGGATTCTATTCCCTGGAGGATGC
GCTTATCATCGACATGCTGGTGCGGAATCCCTGCATGAAGGAGGACGACA
TCGGCGAGCTGTTGCGCTTCGAGAAGAAGCAGTTAAGGGCCCGGATAACC
ACGCTGCGCACCGACAAGTTCATCCAGATCAGGCTTAAAATGGAAACGGG
GCCGGATGGTAAGGCGCAGAAGGTCAATTACTACTTCATCAACTACAAGA
CCTTCGTGAACGTGGTGAAGTACAAGCTGGATCTCATGCGCAAGCGTATG
GAGACGGAGGAGCGTGATGCCACCAGTAGAGCAAGTTTTAAGTGCTCTTC
GTGTTCCAAAACATTCACGGACCTCGAAGCGGACCAGCTGTTCGACATGG
CCACGCTGGAGTTCCGGTGCACCTTCTGCGGCAGTTCCGTGGAGGAGGAC
AGCGCCGCCATGCCCAAGAAAGACTCCCGCCTAATGCTAGCGCACTTCAA
CGAGCAGCTGCAGCCACTGTACGACCTGCTCCGTGAGGTGGAGGGCATCA
AGCTGGCGCCAGAGGTGCTCGAACCGGAGCCCGTGGACATCGACACCATT
CGAGGACTGAACAAACCCAACGCCACGCGACCGGACGGCATGGCGTGGTC
GGGTGAGGCGACGAGAAACCAGGGCTTTGCCGTGGAGGAAACTCGTGTGG
ACGTCACCATTGGCGGCGACGACACCTCGGATGCGGTGATTGAGCGCAAG
TCGCGCCCCATTTGGATGACAGAGAGCACTGTGATAACCGACA
BO06824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10415-PA | 1290 | TfIIEalpha-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIEalpha-RA | 1622 | CG10415-RA | 197..1073 | 17..893 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11682312..11683188 | 17..893 | 4385 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 15:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAHRE | 10463 | TAHRE OSV 10463bp | 1844..1908 | 249..187 | 113 | 66.2 | Minus |
BO06824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:40 Download gff for
BO06824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10415-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:07 Download gff for
BO06824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10415-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:49 Download gff for
BO06824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEalpha-RA | 191..1072 | 9..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:56 Download gff for
BO06824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEalpha-RA | 191..1072 | 9..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:56 Download gff for
BO06824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11682309..11683187 | 16..892 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:49 Download gff for
BO06824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11675409..11676287 | 16..892 | 99 | | Plus |
BO06824.complete Sequence
1321 bp (1321 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630548
> BO06824.complete
GAAGTTATCAGTCGACATGTCGTCGACATCGACGGCTGCAGCGAACGCAG
CGCCAGCGAAGACGGAGGTGCGGTACGTGACCGAGGTGCCCAGCAGTCTG
AAGCAACTGGCGCGCCTCGTGGTCCGTGGATTCTATTCCCTGGAGGATGC
GCTTATCATCGACATGCTGGTGCGGAATCCCTGCATGAAGGAGGACGACA
TCGGCGAGCTGTTGCGCTTCGAGAAGAAGCAGTTAAGGGCCCGGATAACC
ACGCTGCGCACCGACAAGTTCATCCAGATCAGGCTTAAAATGGAAACGGG
GCCGGATGGTAAGGCGCAGAAGGTCAATTACTACTTCATCAACTACAAGA
CCTTCGTGAACGTGGTGAAGTACAAGCTGGATCTCATGCGCAAGCGTATG
GAGACGGAGGAGCGTGATGCCACCAGTAGAGCAAGTTTTAAGTGCTCTTC
GTGTTCCAAAACATTCACGGACCTCGAAGCGGACCAGCTGTTCGACATGG
CCACGCTGGAGTTCCGGTGCACCTTCTGCGGCAGTTCCGTGGAGGAGGAC
AGCGCCGCCATGCCCAAGAAAGACTCCCGCCTAATGCTAGCGCACTTCAA
CGAGCAGCTGCAGCCACTGTACGACCTGCTCCGTGAGGTGGAGGGCATCA
AGCTGGCGCCAGAGGTGCTCGAACCGGAGCCCGTGGACATCGACACCATT
CGAGGACTGAACAAACCCAACGCCACGCGACCGGACGGCATGGCGTGGTC
GGGTGAGGCGACGAGAAACCAGGGCTTTGCCGTGGAGGAAACTCGTGTGG
ACGTCACCATTGGCGGCGACGACACCTCGGATGCGGTGATTGAGCGCAAG
TCGCGCCCCATTTGGATGACAGAGAGCACTGTGATAACCGACACGGATGC
TGCCGATGGCGCGGCCGATGCGGTGCAGACGGCAAGCGGATCTGGGCATC
GCAACCGAAAGGAAAACGAGGACATCATGTCCGTGCTGCTGCAGCATGAG
AAGCAGCCGGGCCAGAAGGAGCCGCATATGAAGGGTATGCGAGTGGGCTC
ATCGAACGCCAACTCTAGCGATTCCAGCGACGACGAAAAGGACATCGAAA
ATTCCAAGATTCCTGATGTCGACTTCGACAATTATATCAACTCAGATTCC
GCGGAGGAGGACGACGATGTGCCCACTGTGCTAGTGGCTGGACGACCGCA
TCCGCTCGACCAACTGGACGACAACCTGATAGCCCAGATGACGCCGCAGG
AGAAGGAGAACTACATACACGTATACCAGCAGCACTACAGCCATATATTC
GAAGCAAGCTTTCTAGACCAT
BO06824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIEalpha-RA | 1290 | CG10415-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIEalpha-RA | 1622 | CG10415-RA | 197..1483 | 17..1303 | 6435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11682312..11683407 | 17..1112 | 5480 | 100 | Plus |
| 3L | 28110227 | 3L | 11683476..11683666 | 1113..1303 | 955 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAHRE | 10463 | TAHRE OSV 10463bp | 1844..1908 | 249..187 | 113 | 66.2 | Minus |
BO06824.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:21:01 Download gff for
BO06824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEalpha-RA | 1..1290 | 17..1306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:44:14 Download gff for
BO06824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEalpha-RA | 203..1495 | 9..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:41 Download gff for
BO06824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEalpha-RA | 197..1483 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:21:02 Download gff for
BO06824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEalpha-RA | 192..1484 | 9..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:58 Download gff for
BO06824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIEalpha-RA | 197..1483 | 17..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:58 Download gff for
BO06824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11682312..11683407 | 17..1112 | 100 | -> | Plus |
| 3L | 11683476..11683666 | 1113..1305 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:41 Download gff for
BO06824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11675412..11676507 | 17..1112 | 100 | -> | Plus |
| arm_3L | 11676576..11676766 | 1113..1305 | 98 | | Plus |
BO06824.pep Sequence
Translation from 16 to 1321
> BO06824.pep
MSSTSTAAANAAPAKTEVRYVTEVPSSLKQLARLVVRGFYSLEDALIIDM
LVRNPCMKEDDIGELLRFEKKQLRARITTLRTDKFIQIRLKMETGPDGKA
QKVNYYFINYKTFVNVVKYKLDLMRKRMETEERDATSRASFKCSSCSKTF
TDLEADQLFDMATLEFRCTFCGSSVEEDSAAMPKKDSRLMLAHFNEQLQP
LYDLLREVEGIKLAPEVLEPEPVDIDTIRGLNKPNATRPDGMAWSGEATR
NQGFAVEETRVDVTIGGDDTSDAVIERKSRPIWMTESTVITDTDAADGAA
DAVQTASGSGHRNRKENEDIMSVLLQHEKQPGQKEPHMKGMRVGSSNANS
SDSSDDEKDIENSKIPDVDFDNYINSDSAEEDDDVPTVLVAGRPHPLDQL
DDNLIAQMTPQEKENYIHVYQQHYSHIFEASFLDH
BO06824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIEalpha-PA | 429 | CG10415-PA | 1..429 | 1..429 | 2208 | 100 | Plus |
