Clone Sequence Records
BO06826.3prime Sequence
683 bp (682 high quality bases) assembled on 2005-12-03
> BO06826.3prime
ATGGTCTAGAAAGCTTGCAAGCATAGTAAGCTCCATGATGGCGTTGACGA
TGTCATTGTTGTTGTTCTTCAGAGCCTTGATCGCCTTGGCCCTCGTCGTG
TTGGCCTGCGTGATGACCAGCTCGATATCCTTCTCATCCACGCCGGTGTC
ATCGACATCCTCCTCGTCTTCCTCGGCAATGGGGGCCACCGATGTGGTGG
CGCCCACGCTGTCTGCAGCGCCAGCAGCCTCCGGGGCCTTGAACTTCTCG
GCGGCAGCCACCTGGGCCTGTTGCGACAGATCCTCGATCTTGGCCTCACC
GAACACGATGTAGGTGTCGCTGTGGGGGTTCTTGTACACATCTGGGTTGT
TGATCACGAACAGGATGTTCTTCGACTTCCTGATCGTCACCCGGTTGACG
CCCTGGATCTGCTTAAGTCCCAGCTTCAGCATGATCTTCCTGGCCTTTTT
CTCGCCGCGCGATTGCTTGGCCTTTGAGACGAGGTCGATGGGCAGACCGG
TGGCACCTCCACCCAGCTGTGTGGTGGCCGCTACAGCCTCCTCCAGACCA
GGCATGCCACCATCGGAGTCGCTATCACTGCCATCATCCTCAACGCGGAC
GTCCTCGGGTTTCGCCTCAGCGGAGGTGGAGGGCGCAGCCTCGCTCTTGA
TTTCGGTCAGTTCGGGCATGTCGACTGATAACT
BO06826.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8759-PB | 654 | Nacalpha-RB | 1..651 | 669..19 | 3255 | 100 | Minus |
CG8759-PC | 654 | Nacalpha-RC | 1..651 | 669..19 | 3255 | 100 | Minus |
CG8759-PA | 654 | Nacalpha-RA | 1..651 | 669..19 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nacalpha-RD | 832 | CG8759-RD | 10..660 | 669..19 | 3255 | 100 | Minus |
Nacalpha-RA | 895 | CG8759-RA | 73..723 | 669..19 | 3255 | 100 | Minus |
Nacalpha-RC | 865 | CG8759-RC | 43..693 | 669..19 | 3255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12759865..12760515 | 19..669 | 3255 | 100 | Plus |
3R | 32079331 | 3R | 1516474..1516532 | 79..21 | 250 | 94.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:03:59 has no hits.
BO06826.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:41 Download gff for
BO06826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8759-PA | 1..654 | 18..669 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:09 Download gff for
BO06826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8759-PA | 1..654 | 18..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:45:37 Download gff for
BO06826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RB | 202..858 | 13..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:27 Download gff for
BO06826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RC | 43..699 | 13..669 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:27 Download gff for
BO06826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12759859..12760524 | 13..677 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:45:37 Download gff for
BO06826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8647364..8648029 | 13..677 | 98 | | Plus |
BO06826.5prime Sequence
683 bp (682 high quality bases) assembled on 2005-12-03
> BO06826.5prime
GAAGTTATCAGTCGACATGCCCGAACTGACCGAAATCAAGAGCGAGGCTG
CGCCCTCCACCTCCGCTGAGGCGAAACCCGAGGACGTCCGCGTTGAGGAT
GATGGCAGTGATAGCGACTCCGATGGTGGCATGCCTGGTCTGGAGGAGGC
TGTAGCGGCCACCACACAGCTGGGTGGAGGTGCCACCGGTCTGCCCATCG
ACCTCGTCTCAAAGGCCAAGCAATCGCGCGGCGAGAAAAAGGCCAGGAAG
ATCATGCTGAAGCTGGGACTTAAGCAGATCCAGGGCGTCAACCGGGTGAC
GATCAGGAAGTCGAAGAACATCCTGTTCGTGATCAACAACCCAGATGTGT
ACAAGAACCCCCACAGCGACACCTACATCGTGTTCGGTGAGGCCAAGATC
GAGGATCTGTCGCAACAGGCCCAGGTGGCTGCCGCCGAGAAGTTCAAGGC
CCCGGAGGCTGCTGGCGCTGCAGACAGCGTGGGCGCCACCACATCGGTGG
CCCCCATTGCCGAGGAAGACGAGGAGGATGTCGATGACACCGGCGTGGAT
GAGAAGGATATCGAGCTGGTCATCACGCAGGCCAACACGACGAGGGCCAA
GGCGATCAAGGCTCTGAAGAACAACAACAATGACATCGTCAACGCCATCA
TGGAGCTTACTATGCTTGCAAGCTTTCTAGACC
BO06826.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8759-PB | 654 | Nacalpha-RB | 1..651 | 17..667 | 3255 | 100 | Plus |
CG8759-PC | 654 | Nacalpha-RC | 1..651 | 17..667 | 3255 | 100 | Plus |
CG8759-PA | 654 | Nacalpha-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:25:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nacalpha-RD | 832 | CG8759-RD | 10..660 | 17..667 | 3255 | 100 | Plus |
Nacalpha-RA | 895 | CG8759-RA | 73..723 | 17..667 | 3255 | 100 | Plus |
Nacalpha-RC | 865 | CG8759-RC | 43..693 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:25:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12759865..12760515 | 667..17 | 3255 | 100 | Minus |
3R | 32079331 | 3R | 1516474..1516532 | 607..665 | 250 | 94.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:25:15 has no hits.
BO06826.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:42 Download gff for
BO06826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8759-PA | 1..654 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:10 Download gff for
BO06826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8759-PA | 1..654 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:17 Download gff for
BO06826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RB | 202..858 | 17..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:35:46 Download gff for
BO06826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RC | 43..699 | 17..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:35:46 Download gff for
BO06826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12759859..12760524 | 9..673 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:17 Download gff for
BO06826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8647364..8648029 | 9..673 | 98 | | Minus |
BO06826.complete Sequence
685 bp (685 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630549
> BO06826.complete
GAAGTTATCAGTCGACATGCCCGAACTGACCGAAATCAAGAGCGAGGCTG
CGCCCTCCACCTCCGCTGAGGCGAAACCCGAGGACGTCCGCGTTGAGGAT
GATGGCAGTGATAGCGACTCCGATGGTGGCATGCCTGGTCTGGAGGAGGC
TGTAGCGGCCACCACACAGCTGGGTGGAGGTGCCACCGGTCTGCCCATCG
ACCTCGTCTCAAAGGCCAAGCAATCGCGCGGCGAGAAAAAGGCCAGGAAG
ATCATGCTGAAGCTGGGACTTAAGCAGATCCAGGGCGTCAACCGGGTGAC
GATCAGGAAGTCGAAGAACATCCTGTTCGTGATCAACAACCCAGATGTGT
ACAAGAACCCCCACAGCGACACCTACATCGTGTTCGGTGAGGCCAAGATC
GAGGATCTGTCGCAACAGGCCCAGGTGGCTGCCGCCGAGAAGTTCAAGGC
CCCGGAGGCTGCTGGCGCTGCAGACAGCGTGGGCGCCACCACATCGGTGG
CCCCCATTGCCGAGGAAGACGAGGAGGATGTCGATGACACCGGCGTGGAT
GAGAAGGATATCGAGCTGGTCATCACGCAGGCCAACACGACGAGGGCCAA
GGCGATCAAGGCTCTGAAGAACAACAACAATGACATCGTCAACGCCATCA
TGGAGCTTACTATGCTTGCAAGCTTTCTAGACCAT
BO06826.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nacalpha-RD | 654 | CG8759-PD | 1..651 | 17..667 | 3255 | 100 | Plus |
Nacalpha-RA | 654 | CG8759-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Nacalpha-RC | 654 | CG8759-PC | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nacalpha-RD | 832 | CG8759-RD | 10..660 | 17..667 | 3255 | 100 | Plus |
Nacalpha-RA | 895 | CG8759-RA | 73..723 | 17..667 | 3255 | 100 | Plus |
Nacalpha-RC | 865 | CG8759-RC | 43..693 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12759865..12760515 | 667..17 | 3255 | 100 | Minus |
3R | 32079331 | 3R | 1516474..1516532 | 607..665 | 250 | 94.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:00:50 has no hits.
BO06826.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:39 Download gff for
BO06826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RA | 1..654 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:47 Download gff for
BO06826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RA | 48..704 | 17..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:40 Download gff for
BO06826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RB | 202..852 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:41 Download gff for
BO06826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RA | 48..704 | 17..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:18 Download gff for
BO06826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nacalpha-RC | 43..693 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:18 Download gff for
BO06826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12759863..12760515 | 17..669 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:40 Download gff for
BO06826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8647368..8648020 | 17..669 | 99 | | Minus |
BO06826.pep Sequence
Translation from 16 to 685
> BO06826.pep
MPELTEIKSEAAPSTSAEAKPEDVRVEDDGSDSDSDGGMPGLEEAVAATT
QLGGGATGLPIDLVSKAKQSRGEKKARKIMLKLGLKQIQGVNRVTIRKSK
NILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAAAEKFKAPEAAG
AADSVGATTSVAPIAEEDEEDVDDTGVDEKDIELVITQANTTRAKAIKAL
KNNNNDIVNAIMELTMLASFLDH
BO06826.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nacalpha-PD | 217 | CG8759-PD | 1..217 | 1..217 | 1071 | 100 | Plus |
Nacalpha-PA | 217 | CG8759-PA | 1..217 | 1..217 | 1071 | 100 | Plus |
Nacalpha-PC | 217 | CG8759-PC | 1..217 | 1..217 | 1071 | 100 | Plus |
Nacalpha-PB | 217 | CG8759-PB | 1..217 | 1..217 | 1071 | 100 | Plus |
CG4415-PB | 347 | CG4415-PB | 145..346 | 26..216 | 350 | 45.1 | Plus |