Clone BO06826 Report

Search the DGRC for BO06826

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptNacalpha-RA
Protein status:BO06826.pep: validated full length
Sequenced Size:685

Clone Sequence Records

BO06826.3prime Sequence

683 bp (682 high quality bases) assembled on 2005-12-03

> BO06826.3prime
ATGGTCTAGAAAGCTTGCAAGCATAGTAAGCTCCATGATGGCGTTGACGA
TGTCATTGTTGTTGTTCTTCAGAGCCTTGATCGCCTTGGCCCTCGTCGTG
TTGGCCTGCGTGATGACCAGCTCGATATCCTTCTCATCCACGCCGGTGTC
ATCGACATCCTCCTCGTCTTCCTCGGCAATGGGGGCCACCGATGTGGTGG
CGCCCACGCTGTCTGCAGCGCCAGCAGCCTCCGGGGCCTTGAACTTCTCG
GCGGCAGCCACCTGGGCCTGTTGCGACAGATCCTCGATCTTGGCCTCACC
GAACACGATGTAGGTGTCGCTGTGGGGGTTCTTGTACACATCTGGGTTGT
TGATCACGAACAGGATGTTCTTCGACTTCCTGATCGTCACCCGGTTGACG
CCCTGGATCTGCTTAAGTCCCAGCTTCAGCATGATCTTCCTGGCCTTTTT
CTCGCCGCGCGATTGCTTGGCCTTTGAGACGAGGTCGATGGGCAGACCGG
TGGCACCTCCACCCAGCTGTGTGGTGGCCGCTACAGCCTCCTCCAGACCA
GGCATGCCACCATCGGAGTCGCTATCACTGCCATCATCCTCAACGCGGAC
GTCCTCGGGTTTCGCCTCAGCGGAGGTGGAGGGCGCAGCCTCGCTCTTGA
TTTCGGTCAGTTCGGGCATGTCGACTGATAACT

BO06826.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8759-PB 654 Nacalpha-RB 1..651 669..19 3255 100 Minus
CG8759-PC 654 Nacalpha-RC 1..651 669..19 3255 100 Minus
CG8759-PA 654 Nacalpha-RA 1..651 669..19 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
Nacalpha-RD 832 CG8759-RD 10..660 669..19 3255 100 Minus
Nacalpha-RA 895 CG8759-RA 73..723 669..19 3255 100 Minus
Nacalpha-RC 865 CG8759-RC 43..693 669..19 3255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12759865..12760515 19..669 3255 100 Plus
3R 32079331 3R 1516474..1516532 79..21 250 94.9 Minus
Blast to na_te.dros performed on 2015-02-11 23:03:59 has no hits.

BO06826.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:41 Download gff for BO06826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8759-PA 1..654 18..669 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:09 Download gff for BO06826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8759-PA 1..654 18..669 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:45:37 Download gff for BO06826.3prime
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RB 202..858 13..669 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:27 Download gff for BO06826.3prime
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RC 43..699 13..669 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:27 Download gff for BO06826.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12759859..12760524 13..677 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:45:37 Download gff for BO06826.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8647364..8648029 13..677 98   Plus

BO06826.5prime Sequence

683 bp (682 high quality bases) assembled on 2005-12-03

> BO06826.5prime
GAAGTTATCAGTCGACATGCCCGAACTGACCGAAATCAAGAGCGAGGCTG
CGCCCTCCACCTCCGCTGAGGCGAAACCCGAGGACGTCCGCGTTGAGGAT
GATGGCAGTGATAGCGACTCCGATGGTGGCATGCCTGGTCTGGAGGAGGC
TGTAGCGGCCACCACACAGCTGGGTGGAGGTGCCACCGGTCTGCCCATCG
ACCTCGTCTCAAAGGCCAAGCAATCGCGCGGCGAGAAAAAGGCCAGGAAG
ATCATGCTGAAGCTGGGACTTAAGCAGATCCAGGGCGTCAACCGGGTGAC
GATCAGGAAGTCGAAGAACATCCTGTTCGTGATCAACAACCCAGATGTGT
ACAAGAACCCCCACAGCGACACCTACATCGTGTTCGGTGAGGCCAAGATC
GAGGATCTGTCGCAACAGGCCCAGGTGGCTGCCGCCGAGAAGTTCAAGGC
CCCGGAGGCTGCTGGCGCTGCAGACAGCGTGGGCGCCACCACATCGGTGG
CCCCCATTGCCGAGGAAGACGAGGAGGATGTCGATGACACCGGCGTGGAT
GAGAAGGATATCGAGCTGGTCATCACGCAGGCCAACACGACGAGGGCCAA
GGCGATCAAGGCTCTGAAGAACAACAACAATGACATCGTCAACGCCATCA
TGGAGCTTACTATGCTTGCAAGCTTTCTAGACC

BO06826.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8759-PB 654 Nacalpha-RB 1..651 17..667 3255 100 Plus
CG8759-PC 654 Nacalpha-RC 1..651 17..667 3255 100 Plus
CG8759-PA 654 Nacalpha-RA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Nacalpha-RD 832 CG8759-RD 10..660 17..667 3255 100 Plus
Nacalpha-RA 895 CG8759-RA 73..723 17..667 3255 100 Plus
Nacalpha-RC 865 CG8759-RC 43..693 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12759865..12760515 667..17 3255 100 Minus
3R 32079331 3R 1516474..1516532 607..665 250 94.9 Plus
Blast to na_te.dros performed on 2015-02-13 12:25:15 has no hits.

BO06826.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:42 Download gff for BO06826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8759-PA 1..654 17..668 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:10 Download gff for BO06826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8759-PA 1..654 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:17 Download gff for BO06826.5prime
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RB 202..858 17..673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:35:46 Download gff for BO06826.5prime
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RC 43..699 17..673 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:35:46 Download gff for BO06826.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12759859..12760524 9..673 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:17 Download gff for BO06826.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8647364..8648029 9..673 98   Minus

BO06826.complete Sequence

685 bp (685 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630549

> BO06826.complete
GAAGTTATCAGTCGACATGCCCGAACTGACCGAAATCAAGAGCGAGGCTG
CGCCCTCCACCTCCGCTGAGGCGAAACCCGAGGACGTCCGCGTTGAGGAT
GATGGCAGTGATAGCGACTCCGATGGTGGCATGCCTGGTCTGGAGGAGGC
TGTAGCGGCCACCACACAGCTGGGTGGAGGTGCCACCGGTCTGCCCATCG
ACCTCGTCTCAAAGGCCAAGCAATCGCGCGGCGAGAAAAAGGCCAGGAAG
ATCATGCTGAAGCTGGGACTTAAGCAGATCCAGGGCGTCAACCGGGTGAC
GATCAGGAAGTCGAAGAACATCCTGTTCGTGATCAACAACCCAGATGTGT
ACAAGAACCCCCACAGCGACACCTACATCGTGTTCGGTGAGGCCAAGATC
GAGGATCTGTCGCAACAGGCCCAGGTGGCTGCCGCCGAGAAGTTCAAGGC
CCCGGAGGCTGCTGGCGCTGCAGACAGCGTGGGCGCCACCACATCGGTGG
CCCCCATTGCCGAGGAAGACGAGGAGGATGTCGATGACACCGGCGTGGAT
GAGAAGGATATCGAGCTGGTCATCACGCAGGCCAACACGACGAGGGCCAA
GGCGATCAAGGCTCTGAAGAACAACAACAATGACATCGTCAACGCCATCA
TGGAGCTTACTATGCTTGCAAGCTTTCTAGACCAT

BO06826.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
Nacalpha-RD 654 CG8759-PD 1..651 17..667 3255 100 Plus
Nacalpha-RA 654 CG8759-PA 1..651 17..667 3255 100 Plus
Nacalpha-RC 654 CG8759-PC 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
Nacalpha-RD 832 CG8759-RD 10..660 17..667 3255 100 Plus
Nacalpha-RA 895 CG8759-RA 73..723 17..667 3255 100 Plus
Nacalpha-RC 865 CG8759-RC 43..693 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12759865..12760515 667..17 3255 100 Minus
3R 32079331 3R 1516474..1516532 607..665 250 94.9 Plus
Blast to na_te.dros performed on 2014-11-27 16:00:50 has no hits.

BO06826.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:39 Download gff for BO06826.complete
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RA 1..654 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:47 Download gff for BO06826.complete
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RA 48..704 17..673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:40 Download gff for BO06826.complete
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RB 202..852 17..669 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:41 Download gff for BO06826.complete
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RA 48..704 17..673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:18 Download gff for BO06826.complete
Subject Subject Range Query Range Percent Splice Strand
Nacalpha-RC 43..693 17..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:18 Download gff for BO06826.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12759863..12760515 17..669 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:40 Download gff for BO06826.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8647368..8648020 17..669 99   Minus

BO06826.pep Sequence

Translation from 16 to 685

> BO06826.pep
MPELTEIKSEAAPSTSAEAKPEDVRVEDDGSDSDSDGGMPGLEEAVAATT
QLGGGATGLPIDLVSKAKQSRGEKKARKIMLKLGLKQIQGVNRVTIRKSK
NILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAAAEKFKAPEAAG
AADSVGATTSVAPIAEEDEEDVDDTGVDEKDIELVITQANTTRAKAIKAL
KNNNNDIVNAIMELTMLASFLDH

BO06826.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
Nacalpha-PD 217 CG8759-PD 1..217 1..217 1071 100 Plus
Nacalpha-PA 217 CG8759-PA 1..217 1..217 1071 100 Plus
Nacalpha-PC 217 CG8759-PC 1..217 1..217 1071 100 Plus
Nacalpha-PB 217 CG8759-PB 1..217 1..217 1071 100 Plus
CG4415-PB 347 CG4415-PB 145..346 26..216 350 45.1 Plus