Clone BO06830 Report

Search the DGRC for BO06830

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG31199-RA
Protein status:BO06830.pep: validated full length
Sequenced Size:913

Clone Sequence Records

BO06830.3prime Sequence

911 bp (855 high quality bases) assembled on 2005-12-03

> BO06830.3prime
ATGGTCTAGAAAGCTTGCGGAGCGTACAATCAGTGAGTTGGAGTTCTGTC
GGATGAAGTCCATGTAGTTGCGTATGGCCAGAAAGCTGGACATGATGCGG
TTGTTCTCCCAGCGCCAGTCGATCATGATGCCCACCAGGTAGTAGTTCTG
AGTGACGTGCCCCTTCTTCTGCAACCCCACTAGAGGTGCGCCCAAGTAAT
AAGCTACCGGTTGCTTGTGGTAGCCACAAACCGTGTTGCTGCTGGTCACC
AGCGTCTTGACCTTCGATTGACAGAAGCCGCGACTCAGCGTGTTTACCCA
GGTCTTTAGTCTGAAGTCCTCAAAGACGCGAAGACCAGCTACTACAAACG
TCTGAGCAACCAGGGTCTCGTTGAGCAGGCTTGGAGGTGGCATGCAAATT
GGCATTACATTTGGGTAGATCTTTGCGTCTCGCTGAAGAGTCAGCACCGC
CAGGGAGTTCTTTAAGGTTCGCGAGTCGTAGTCCGGATGGATGGCTATCT
CGGCCAGCTTGATTTCCTGCGACGGACGCACGCAATAGCCATCCGTTTCG
CAGACTCGCACTCCGACCGGAGCACTCTTGTTGTGGACACCCAGGTGGAC
GGAGAAGGCCTCCGCTACTCCGTTGTACTGGACAAAACAGTGGGCGGGCG
CCAAGACAGTGCGCTTCGATACCAGCACGCCCAGACATCCATTGTCCCGA
ATCTTGCCCTCAAACCCCTTGCCATACACTATCCGGGCCACCCACTGGTG
CTCCGTGGGAATGGCGAAGGTGCTTTGCATATTGAGCATCTGATCTTCGT
CGAATGCACCGCACTGGTCATCATTCACTTTCGCCGACCGAACTTCCGGG
CCAAAAAGACCGACGAGCAATAATAAAACTGCGATTCTACCAAGCATGTC
GACTGATAACT

BO06830.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31199-PA 882 CG31199-RA 1..879 897..19 4395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31199-RA 1013 CG31199-RA 105..983 897..19 4395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20742830..20743528 19..717 3495 100 Plus
3R 32079331 3R 20743584..20743765 716..897 910 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:30:54 has no hits.

BO06830.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:49 Download gff for BO06830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-PA 1..882 16..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:20 Download gff for BO06830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-PA 1..882 16..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:02:25 Download gff for BO06830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 100..990 12..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:52 Download gff for BO06830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 100..990 12..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:52 Download gff for BO06830.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20742823..20743527 12..716 99 <- Plus
3R 20743585..20743770 717..906 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:02:25 Download gff for BO06830.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16568545..16569249 12..716 99 <- Plus
arm_3R 16569307..16569492 717..906 97   Plus

BO06830.5prime Sequence

910 bp (733 high quality bases) assembled on 2005-12-03

> BO06830.5prime
GAAGTTATCAGTCGACATGCTTGGTAGAATCGCAGTTTTATTATTGCTCG
TCGGTCTTTTTGGCCCGGAAGTTCGGTCGGCGAAAGTGAATGATGACCAG
TGCGGTGCATTCGACGAAGATCAGATGCTCAATATGCAAAGCACCTTCGC
CATTCCCACGGAGCACCAGTGGGTGGCCCGGATAGTGTATGGCAAGGGGT
TTGAGGGCAAGATTCGGGACAATGGATGTCTGGGCGTGCTGGTATCGAAG
CGCACTGTCTTGGCGCCCGCCCACTGTTTTGTCCAGTACAACGGAGTAGC
GGAGGCCTTCTCCGTCCACCTGGGTGTCCACAACAAGAGTGCTCCGGTCG
GAGTGCGAGTCTGCGAAACGGATGGCTATTGCGTGCGTCCGTCGCAGGAA
ATCAAGCTGGCCGAGATAGCCATCCATCCGGACTACGACTCGCGAACCTT
AAAGAACTCCCTGGCGGTGCTGACTCTTCAGCGAGACGCAAAGATCTACC
CAAATGTAATGCCAATTTGCATGCCACCTCCAAGCCTGCTCAACGAGACC
CTGGTTGCTCAGACGTTTGTAGTAGCTGGTCTTCGCGTCTTTGAGGACTT
CAGACTAAAGACCTGGGTAAACACGCTGAGTCGCGGCTTCTGTCAATCGA
AGGTCAAGACGCTGGTGACCAGCAGCAACACGGTTTGTGGCTACCACAAG
CAACCGGTAGCTTATTACTTGGGCGCACCTCTAGTGGGGTTGCAGAAGAA
GGGGCACGTCACTCAGAACTACTACCTGGTGGGCATCATGATCGACTGGC
GCTGGGAGAACACCGCATCATGTCCAGCTTTCTGGGCATACGCAACTACA
TGGACTTCATCCGACAGAACTCCNACTCACTGATTGTACGCTCCGCAAGC
TTTCTAGACC

BO06830.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31199-PA 882 CG31199-RA 1..796 17..812 3980 100 Plus
CG31199-PA 882 CG31199-RA 797..879 812..894 371 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31199-RA 1013 CG31199-RA 105..983 17..894 4344 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20742830..20743528 894..197 3419 99.6 Minus
3R 32079331 3R 20743584..20743765 198..17 910 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:10:16 has no hits.

BO06830.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:50 Download gff for BO06830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-PA 1..882 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:21 Download gff for BO06830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-PA 1..882 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:23 Download gff for BO06830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 100..990 8..901 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:36 Download gff for BO06830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 100..990 8..901 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:36 Download gff for BO06830.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20742823..20743527 198..901 99 <- Minus
3R 20743585..20743770 8..197 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:23 Download gff for BO06830.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16569307..16569492 8..197 97   Minus
arm_3R 16568545..16569249 198..901 99 <- Minus

BO06830.complete Sequence

913 bp (913 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630551

> BO06830.complete
GAAGTTATCAGTCGACATGCTTGGTAGAATCGCAGTTTTATTATTGCTCG
TCGGTCTTTTTGGCCCGGAAGTTCGGTCGGCGAAAGTGAATGATGACCAG
TGCGGTGCATTCGACGAAGATCAGATGCTCAATATGCAAAGCACCTTCGC
CATTCCCACGGAGCACCAGTGGGTGGCCCGGATAGTGTATGGCAAGGGGT
TTGAGGGCAAGATTCGGGACAATGGATGTCTGGGCGTGCTGGTATCGAAG
CGCACTGTCTTGGCGCCCGCCCACTGTTTTGTCCAGTACAACGGAGTAGC
GGAGGCCTTCTCCGTCCACCTGGGTGTCCACAACAAGAGTGCTCCGGTCG
GAGTGCGAGTCTGCGAAACGGATGGCTATTGCGTGCGTCCGTCGCAGGAA
ATCAAGCTGGCCGAGATAGCCATCCATCCGGACTACGACTCGCGAACCTT
AAAGAACTCCCTGGCGGTGCTGACTCTTCAGCGAGACGCAAAGATCTACC
CAAATGTAATGCCAATTTGCATGCCACCTCCAAGCCTGCTCAACGAGACC
CTGGTTGCTCAGACGTTTGTAGTAGCTGGTCTTCGCGTCTTTGAGGACTT
CAGACTAAAGACCTGGGTAAACACGCTGAGTCGCGGCTTCTGTCAATCGA
AGGTCAAGACGCTGGTGACCAGCAGCAACACGGTTTGTGGCTACCACAAG
CAACCGGTAGCTTATTACTTGGGCGCACCTCTAGTGGGGTTGCAGAAGAA
GGGGCACGTCACTCAGAACTACTACCTGGTGGGCATCATGATCGACTGGC
GCTGGGAGAACAACCGCATCATGTCCAGCTTTCTGGCCATACGCAACTAC
ATGGACTTCATCCGACAGAACTCCAACTCACTGATTGTACGCTCCGCAAG
CTTTCTAGACCAT

BO06830.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31199-RA 882 CG31199-PA 1..879 17..895 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31199-RA 1013 CG31199-RA 105..983 17..895 4395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20742830..20743528 895..197 3495 100 Minus
3R 32079331 3R 20743584..20743765 198..17 910 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:45:49 has no hits.

BO06830.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:44 Download gff for BO06830.complete
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 1..882 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:51 Download gff for BO06830.complete
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 100..990 8..902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:21 Download gff for BO06830.complete
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 105..983 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:44 Download gff for BO06830.complete
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 100..990 8..902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:01 Download gff for BO06830.complete
Subject Subject Range Query Range Percent Splice Strand
CG31199-RA 105..983 17..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:01 Download gff for BO06830.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20742827..20743527 198..897 99 <- Minus
3R 20743585..20743765 17..197 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:21 Download gff for BO06830.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16568549..16569249 198..897 99 <- Minus
arm_3R 16569307..16569487 17..197 100   Minus

BO06830.pep Sequence

Translation from 16 to 913

> BO06830.pep
MLGRIAVLLLLVGLFGPEVRSAKVNDDQCGAFDEDQMLNMQSTFAIPTEH
QWVARIVYGKGFEGKIRDNGCLGVLVSKRTVLAPAHCFVQYNGVAEAFSV
HLGVHNKSAPVGVRVCETDGYCVRPSQEIKLAEIAIHPDYDSRTLKNSLA
VLTLQRDAKIYPNVMPICMPPPSLLNETLVAQTFVVAGLRVFEDFRLKTW
VNTLSRGFCQSKVKTLVTSSNTVCGYHKQPVAYYLGAPLVGLQKKGHVTQ
NYYLVGIMIDWRWENNRIMSSFLAIRNYMDFIRQNSNSLIVRSASFLDH

BO06830.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31199-PA 293 CG31199-PA 1..293 1..293 1537 100 Plus
CG31200-PA 284 CG31200-PA 25..256 28..259 223 28.7 Plus
CG31205-PC 274 CG31205-PC 5..273 4..289 215 27 Plus
CG31205-PB 274 CG31205-PB 5..273 4..289 215 27 Plus
CG11313-PD 370 CG11313-PD 125..299 48..217 178 28.3 Plus