Clone Sequence Records
BO06830.3prime Sequence
911 bp (855 high quality bases) assembled on 2005-12-03
> BO06830.3prime
ATGGTCTAGAAAGCTTGCGGAGCGTACAATCAGTGAGTTGGAGTTCTGTC
GGATGAAGTCCATGTAGTTGCGTATGGCCAGAAAGCTGGACATGATGCGG
TTGTTCTCCCAGCGCCAGTCGATCATGATGCCCACCAGGTAGTAGTTCTG
AGTGACGTGCCCCTTCTTCTGCAACCCCACTAGAGGTGCGCCCAAGTAAT
AAGCTACCGGTTGCTTGTGGTAGCCACAAACCGTGTTGCTGCTGGTCACC
AGCGTCTTGACCTTCGATTGACAGAAGCCGCGACTCAGCGTGTTTACCCA
GGTCTTTAGTCTGAAGTCCTCAAAGACGCGAAGACCAGCTACTACAAACG
TCTGAGCAACCAGGGTCTCGTTGAGCAGGCTTGGAGGTGGCATGCAAATT
GGCATTACATTTGGGTAGATCTTTGCGTCTCGCTGAAGAGTCAGCACCGC
CAGGGAGTTCTTTAAGGTTCGCGAGTCGTAGTCCGGATGGATGGCTATCT
CGGCCAGCTTGATTTCCTGCGACGGACGCACGCAATAGCCATCCGTTTCG
CAGACTCGCACTCCGACCGGAGCACTCTTGTTGTGGACACCCAGGTGGAC
GGAGAAGGCCTCCGCTACTCCGTTGTACTGGACAAAACAGTGGGCGGGCG
CCAAGACAGTGCGCTTCGATACCAGCACGCCCAGACATCCATTGTCCCGA
ATCTTGCCCTCAAACCCCTTGCCATACACTATCCGGGCCACCCACTGGTG
CTCCGTGGGAATGGCGAAGGTGCTTTGCATATTGAGCATCTGATCTTCGT
CGAATGCACCGCACTGGTCATCATTCACTTTCGCCGACCGAACTTCCGGG
CCAAAAAGACCGACGAGCAATAATAAAACTGCGATTCTACCAAGCATGTC
GACTGATAACT
BO06830.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31199-PA | 882 | CG31199-RA | 1..879 | 897..19 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31199-RA | 1013 | CG31199-RA | 105..983 | 897..19 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:30:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20742830..20743528 | 19..717 | 3495 | 100 | Plus |
3R | 32079331 | 3R | 20743584..20743765 | 716..897 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:30:54 has no hits.
BO06830.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:49 Download gff for
BO06830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-PA | 1..882 | 16..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:20 Download gff for
BO06830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-PA | 1..882 | 16..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:02:25 Download gff for
BO06830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 100..990 | 12..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:52 Download gff for
BO06830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 100..990 | 12..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:52 Download gff for
BO06830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20742823..20743527 | 12..716 | 99 | <- | Plus |
3R | 20743585..20743770 | 717..906 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:02:25 Download gff for
BO06830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16568545..16569249 | 12..716 | 99 | <- | Plus |
arm_3R | 16569307..16569492 | 717..906 | 97 | | Plus |
BO06830.5prime Sequence
910 bp (733 high quality bases) assembled on 2005-12-03
> BO06830.5prime
GAAGTTATCAGTCGACATGCTTGGTAGAATCGCAGTTTTATTATTGCTCG
TCGGTCTTTTTGGCCCGGAAGTTCGGTCGGCGAAAGTGAATGATGACCAG
TGCGGTGCATTCGACGAAGATCAGATGCTCAATATGCAAAGCACCTTCGC
CATTCCCACGGAGCACCAGTGGGTGGCCCGGATAGTGTATGGCAAGGGGT
TTGAGGGCAAGATTCGGGACAATGGATGTCTGGGCGTGCTGGTATCGAAG
CGCACTGTCTTGGCGCCCGCCCACTGTTTTGTCCAGTACAACGGAGTAGC
GGAGGCCTTCTCCGTCCACCTGGGTGTCCACAACAAGAGTGCTCCGGTCG
GAGTGCGAGTCTGCGAAACGGATGGCTATTGCGTGCGTCCGTCGCAGGAA
ATCAAGCTGGCCGAGATAGCCATCCATCCGGACTACGACTCGCGAACCTT
AAAGAACTCCCTGGCGGTGCTGACTCTTCAGCGAGACGCAAAGATCTACC
CAAATGTAATGCCAATTTGCATGCCACCTCCAAGCCTGCTCAACGAGACC
CTGGTTGCTCAGACGTTTGTAGTAGCTGGTCTTCGCGTCTTTGAGGACTT
CAGACTAAAGACCTGGGTAAACACGCTGAGTCGCGGCTTCTGTCAATCGA
AGGTCAAGACGCTGGTGACCAGCAGCAACACGGTTTGTGGCTACCACAAG
CAACCGGTAGCTTATTACTTGGGCGCACCTCTAGTGGGGTTGCAGAAGAA
GGGGCACGTCACTCAGAACTACTACCTGGTGGGCATCATGATCGACTGGC
GCTGGGAGAACACCGCATCATGTCCAGCTTTCTGGGCATACGCAACTACA
TGGACTTCATCCGACAGAACTCCNACTCACTGATTGTACGCTCCGCAAGC
TTTCTAGACC
BO06830.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31199-PA | 882 | CG31199-RA | 1..796 | 17..812 | 3980 | 100 | Plus |
CG31199-PA | 882 | CG31199-RA | 797..879 | 812..894 | 371 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31199-RA | 1013 | CG31199-RA | 105..983 | 17..894 | 4344 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20742830..20743528 | 894..197 | 3419 | 99.6 | Minus |
3R | 32079331 | 3R | 20743584..20743765 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:10:16 has no hits.
BO06830.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:50 Download gff for
BO06830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-PA | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:21 Download gff for
BO06830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-PA | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:23 Download gff for
BO06830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 100..990 | 8..901 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:36 Download gff for
BO06830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 100..990 | 8..901 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:36 Download gff for
BO06830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20742823..20743527 | 198..901 | 99 | <- | Minus |
3R | 20743585..20743770 | 8..197 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:23 Download gff for
BO06830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16569307..16569492 | 8..197 | 97 | | Minus |
arm_3R | 16568545..16569249 | 198..901 | 99 | <- | Minus |
BO06830.complete Sequence
913 bp (913 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630551
> BO06830.complete
GAAGTTATCAGTCGACATGCTTGGTAGAATCGCAGTTTTATTATTGCTCG
TCGGTCTTTTTGGCCCGGAAGTTCGGTCGGCGAAAGTGAATGATGACCAG
TGCGGTGCATTCGACGAAGATCAGATGCTCAATATGCAAAGCACCTTCGC
CATTCCCACGGAGCACCAGTGGGTGGCCCGGATAGTGTATGGCAAGGGGT
TTGAGGGCAAGATTCGGGACAATGGATGTCTGGGCGTGCTGGTATCGAAG
CGCACTGTCTTGGCGCCCGCCCACTGTTTTGTCCAGTACAACGGAGTAGC
GGAGGCCTTCTCCGTCCACCTGGGTGTCCACAACAAGAGTGCTCCGGTCG
GAGTGCGAGTCTGCGAAACGGATGGCTATTGCGTGCGTCCGTCGCAGGAA
ATCAAGCTGGCCGAGATAGCCATCCATCCGGACTACGACTCGCGAACCTT
AAAGAACTCCCTGGCGGTGCTGACTCTTCAGCGAGACGCAAAGATCTACC
CAAATGTAATGCCAATTTGCATGCCACCTCCAAGCCTGCTCAACGAGACC
CTGGTTGCTCAGACGTTTGTAGTAGCTGGTCTTCGCGTCTTTGAGGACTT
CAGACTAAAGACCTGGGTAAACACGCTGAGTCGCGGCTTCTGTCAATCGA
AGGTCAAGACGCTGGTGACCAGCAGCAACACGGTTTGTGGCTACCACAAG
CAACCGGTAGCTTATTACTTGGGCGCACCTCTAGTGGGGTTGCAGAAGAA
GGGGCACGTCACTCAGAACTACTACCTGGTGGGCATCATGATCGACTGGC
GCTGGGAGAACAACCGCATCATGTCCAGCTTTCTGGCCATACGCAACTAC
ATGGACTTCATCCGACAGAACTCCAACTCACTGATTGTACGCTCCGCAAG
CTTTCTAGACCAT
BO06830.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31199-RA | 882 | CG31199-PA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31199-RA | 1013 | CG31199-RA | 105..983 | 17..895 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:45:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20742830..20743528 | 895..197 | 3495 | 100 | Minus |
3R | 32079331 | 3R | 20743584..20743765 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:45:49 has no hits.
BO06830.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:44 Download gff for
BO06830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:51 Download gff for
BO06830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 100..990 | 8..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:21 Download gff for
BO06830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 105..983 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:44 Download gff for
BO06830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 100..990 | 8..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:01 Download gff for
BO06830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31199-RA | 105..983 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:01 Download gff for
BO06830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20742827..20743527 | 198..897 | 99 | <- | Minus |
3R | 20743585..20743765 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:21 Download gff for
BO06830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16568549..16569249 | 198..897 | 99 | <- | Minus |
arm_3R | 16569307..16569487 | 17..197 | 100 | | Minus |
BO06830.pep Sequence
Translation from 16 to 913
> BO06830.pep
MLGRIAVLLLLVGLFGPEVRSAKVNDDQCGAFDEDQMLNMQSTFAIPTEH
QWVARIVYGKGFEGKIRDNGCLGVLVSKRTVLAPAHCFVQYNGVAEAFSV
HLGVHNKSAPVGVRVCETDGYCVRPSQEIKLAEIAIHPDYDSRTLKNSLA
VLTLQRDAKIYPNVMPICMPPPSLLNETLVAQTFVVAGLRVFEDFRLKTW
VNTLSRGFCQSKVKTLVTSSNTVCGYHKQPVAYYLGAPLVGLQKKGHVTQ
NYYLVGIMIDWRWENNRIMSSFLAIRNYMDFIRQNSNSLIVRSASFLDH
BO06830.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31199-PA | 293 | CG31199-PA | 1..293 | 1..293 | 1537 | 100 | Plus |
CG31200-PA | 284 | CG31200-PA | 25..256 | 28..259 | 223 | 28.7 | Plus |
CG31205-PC | 274 | CG31205-PC | 5..273 | 4..289 | 215 | 27 | Plus |
CG31205-PB | 274 | CG31205-PB | 5..273 | 4..289 | 215 | 27 | Plus |
CG11313-PD | 370 | CG11313-PD | 125..299 | 48..217 | 178 | 28.3 | Plus |