Clone BO06833 Report

Search the DGRC for BO06833

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG17919-RA
Protein status:BO06833.pep: validated full length
Sequenced Size:640

Clone Sequence Records

BO06833.3prime Sequence

638 bp (637 high quality bases) assembled on 2005-12-03

> BO06833.3prime
ATGGTCTAGAAAGCTTGCATTCTCCGAAAGTTGCTTGTGCAGTTTTGGAA
CATAGTCGTCGTACTGGGCTTGGTAGAAAGTTCCAGCAATGGGATTGCCC
AACTCGTGATTGATGGCAAACTTGGCGGCACTGAATTTGGGGCGATCCTT
GCGGGATCTCTTGCTCACGCGCTCCTCGTCGAACTCAAGTTTGCCGGACT
GCTTGTACAGCAGGAAGACGTAGCGATGCAGACCCGTGCCCTGGGGCGGG
CCGGAGCCAATGTACTCGGCGATGGGCTCACCACTTGCCAAGTCGTTGCC
GGCGATGTTGGCCAGAATCCAGTGCTTGAACTCGCGGAACTTGGGCTCCG
CTCGGCTGGGGGCATCGGGATCCGTCATAATGAGCGTGTAGAACTCCCCG
GGCTGCGCGTCCCACTCCACGACTGGCTGATCCTTAACCTGGGTGGGCGT
TAGCTCCACTCCATCCTTGGCCACCAGGTTGTTGCTGTACGTGACCTTTA
ACAACTGGTTCGGCGGCTCGGGAATAACGTCGGGTACCACCTGGTGGGAT
CTGAAAACCTCCTCCACGGAGCCAGCTTGAACGGCCAGTAGGCAGCCCAC
CAATGGCAGTAGCACTCGCAGCATGTCGACTGATAACT

BO06833.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17919-PA 609 CG17919-RA 1..606 624..19 3030 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17919-RA 778 CG17919-RA 93..698 624..19 3030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6344528..6345007 498..19 2400 100 Minus
3R 32079331 3R 6344121..6344251 624..494 655 100 Minus
3R 32079331 3R 22466273..22466447 373..199 215 74.9 Minus
Blast to na_te.dros performed on 2015-02-12 23:40:32 has no hits.

BO06833.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:55 Download gff for BO06833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-PA 1..609 16..624 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:28 Download gff for BO06833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-PA 1..609 16..624 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:20:10 Download gff for BO06833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 93..698 19..624 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:22:12 Download gff for BO06833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 93..698 19..624 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:22:12 Download gff for BO06833.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6344531..6345007 19..495 100   Minus
3R 6344121..6344249 496..624 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:20:10 Download gff for BO06833.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2169843..2169971 496..624 100 -> Minus
arm_3R 2170253..2170729 19..495 100   Minus

BO06833.5prime Sequence

638 bp (637 high quality bases) assembled on 2005-12-03

> BO06833.5prime
GAAGTTATCAGTCGACATGCTGCGAGTGCTACTGCCATTGGTGGGCTGCC
TACTGGCCGTTCAAGCTGGCTCCGTGGAGGAGGTTTTCAGATCCCACCAG
GTGGTACCCGACGTTATTCCCGAGCCGCCGAACCAGTTGTTAAAGGTCAC
GTACAGCAACAACCTGGTGGCCAAGGATGGAGTGGAGCTAACGCCCACCC
AGGTTAAGGATCAGCCAGTCGTGGAGTGGGACGCGCAGCCCGGGGAGTTC
TACACGCTCATTATGACGGATCCCGATGCCCCCAGCCGAGCGGAGCCCAA
GTTCCGCGAGTTCAAGCACTGGATTCTGGCCAACATCGCCGGCAACGACT
TGGCAAGTGGTGAGCCCATCGCCGAGTACATTGGCTCCGGCCCGCCCCAG
GGCACGGGTCTGCATCGCTACGTCTTCCTGCTGTACAAGCAGTCCGGCAA
ACTTGAGTTCGACGAGGAGCGCGTGAGCAAGAGATCCCGCAAGGATCGCC
CCAAATTCAGTGCCGCCAAGTTTGCCATCAATCACGAGTTGGGCAATCCC
ATTGCTGGAACTTTCTACCAAGCCCAGTACGACGACTATGTTCCAAAACT
GCACAAGCAACTTTCGGAGAATGCAAGCTTTCTAGACC

BO06833.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17919-PA 609 CG17919-RA 1..606 17..622 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17919-RA 778 CG17919-RA 93..698 17..622 3030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6344528..6345007 143..622 2400 100 Plus
3R 32079331 3R 6344121..6344251 17..147 655 100 Plus
3R 32079331 3R 22466273..22466447 268..442 215 74.9 Plus
Blast to na_te.dros performed on 2015-02-04 20:12:28 has no hits.

BO06833.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:56 Download gff for BO06833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-PA 1..609 17..625 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:29 Download gff for BO06833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-PA 1..609 17..625 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:10 Download gff for BO06833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 93..698 17..622 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:43 Download gff for BO06833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 93..698 17..622 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:43 Download gff for BO06833.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6344121..6344249 17..145 100 -> Plus
3R 6344531..6345007 146..622 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:10 Download gff for BO06833.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2169843..2169971 17..145 100 -> Plus
arm_3R 2170253..2170729 146..622 100   Plus

BO06833.complete Sequence

640 bp (640 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630553

> BO06833.complete
GAAGTTATCAGTCGACATGCTGCGAGTGCTACTGCCATTGGTGGGCTGCC
TACTGGCCGTTCAAGCTGGCTCCGTGGAGGAGGTTTTCAGATCCCACCAG
GTGGTACCCGACGTTATTCCCGAGCCGCCGAACCAGTTGTTAAAGGTCAC
GTACAGCAACAACCTGGTGGCCAAGGATGGAGTGGAGCTAACGCCCACCC
AGGTTAAGGATCAGCCAGTCGTGGAGTGGGACGCGCAGCCCGGGGAGTTC
TACACGCTCATTATGACGGATCCCGATGCCCCCAGCCGAGCGGAGCCCAA
GTTCCGCGAGTTCAAGCACTGGATTCTGGCCAACATCGCCGGCAACGACT
TGGCAAGTGGTGAGCCCATCGCCGAGTACATTGGCTCCGGCCCGCCCCAG
GGCACGGGTCTGCATCGCTACGTCTTCCTGCTGTACAAGCAGTCCGGCAA
ACTTGAGTTCGACGAGGAGCGCGTGAGCAAGAGATCCCGCAAGGATCGCC
CCAAATTCAGTGCCGCCAAGTTTGCCATCAATCACGAGTTGGGCAATCCC
ATTGCTGGAACTTTCTACCAAGCCCAGTACGACGACTATGTTCCAAAACT
GCACAAGCAACTTTCGGAGAATGCAAGCTTTCTAGACCAT

BO06833.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17919-RA 609 CG17919-PA 1..606 17..622 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17919-RA 778 CG17919-RA 93..698 17..622 3030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6344528..6345007 143..622 2400 100 Plus
3R 32079331 3R 6344121..6344251 17..147 655 100 Plus
3R 32079331 3R 22466273..22466447 268..442 215 74.9 Plus
Blast to na_te.dros performed on 2014-11-28 00:51:02 has no hits.

BO06833.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:47 Download gff for BO06833.complete
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 1..609 17..625 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:54 Download gff for BO06833.complete
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 91..696 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:45 Download gff for BO06833.complete
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 93..698 17..624 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:47 Download gff for BO06833.complete
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 91..696 17..622 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:09 Download gff for BO06833.complete
Subject Subject Range Query Range Percent Splice Strand
CG17919-RA 93..698 17..624 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:09 Download gff for BO06833.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6344121..6344249 17..145 100 -> Plus
3R 6344531..6345007 146..624 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:45 Download gff for BO06833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2169843..2169971 17..145 100 -> Plus
arm_3R 2170253..2170729 146..624 99   Plus

BO06833.pep Sequence

Translation from 16 to 640

> BO06833.pep
MLRVLLPLVGCLLAVQAGSVEEVFRSHQVVPDVIPEPPNQLLKVTYSNNL
VAKDGVELTPTQVKDQPVVEWDAQPGEFYTLIMTDPDAPSRAEPKFREFK
HWILANIAGNDLASGEPIAEYIGSGPPQGTGLHRYVFLLYKQSGKLEFDE
ERVSKRSRKDRPKFSAAKFAINHELGNPIAGTFYQAQYDDYVPKLHKQLS
ENASFLDH

BO06833.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17919-PA 202 CG17919-PA 1..202 1..202 1061 100 Plus
CG10298-PA 187 CG10298-PA 8..184 24..200 564 57.6 Plus
CG6180-PA 257 CG6180-PA 76..255 20..199 544 56.7 Plus
Pebp1-PA 176 CG18594-PA 6..171 29..195 465 51.5 Plus
CG7054-PA 179 CG7054-PA 4..177 29..199 457 50.3 Plus