Clone Sequence Records
BO06833.3prime Sequence
638 bp (637 high quality bases) assembled on 2005-12-03
> BO06833.3prime
ATGGTCTAGAAAGCTTGCATTCTCCGAAAGTTGCTTGTGCAGTTTTGGAA
CATAGTCGTCGTACTGGGCTTGGTAGAAAGTTCCAGCAATGGGATTGCCC
AACTCGTGATTGATGGCAAACTTGGCGGCACTGAATTTGGGGCGATCCTT
GCGGGATCTCTTGCTCACGCGCTCCTCGTCGAACTCAAGTTTGCCGGACT
GCTTGTACAGCAGGAAGACGTAGCGATGCAGACCCGTGCCCTGGGGCGGG
CCGGAGCCAATGTACTCGGCGATGGGCTCACCACTTGCCAAGTCGTTGCC
GGCGATGTTGGCCAGAATCCAGTGCTTGAACTCGCGGAACTTGGGCTCCG
CTCGGCTGGGGGCATCGGGATCCGTCATAATGAGCGTGTAGAACTCCCCG
GGCTGCGCGTCCCACTCCACGACTGGCTGATCCTTAACCTGGGTGGGCGT
TAGCTCCACTCCATCCTTGGCCACCAGGTTGTTGCTGTACGTGACCTTTA
ACAACTGGTTCGGCGGCTCGGGAATAACGTCGGGTACCACCTGGTGGGAT
CTGAAAACCTCCTCCACGGAGCCAGCTTGAACGGCCAGTAGGCAGCCCAC
CAATGGCAGTAGCACTCGCAGCATGTCGACTGATAACT
BO06833.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17919-PA | 609 | CG17919-RA | 1..606 | 624..19 | 3030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17919-RA | 778 | CG17919-RA | 93..698 | 624..19 | 3030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6344528..6345007 | 498..19 | 2400 | 100 | Minus |
3R | 32079331 | 3R | 6344121..6344251 | 624..494 | 655 | 100 | Minus |
3R | 32079331 | 3R | 22466273..22466447 | 373..199 | 215 | 74.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:40:32 has no hits.
BO06833.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:55 Download gff for
BO06833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-PA | 1..609 | 16..624 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:28 Download gff for
BO06833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-PA | 1..609 | 16..624 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:20:10 Download gff for
BO06833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 93..698 | 19..624 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:22:12 Download gff for
BO06833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 93..698 | 19..624 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:22:12 Download gff for
BO06833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6344531..6345007 | 19..495 | 100 | | Minus |
3R | 6344121..6344249 | 496..624 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:20:10 Download gff for
BO06833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2169843..2169971 | 496..624 | 100 | -> | Minus |
arm_3R | 2170253..2170729 | 19..495 | 100 | | Minus |
BO06833.5prime Sequence
638 bp (637 high quality bases) assembled on 2005-12-03
> BO06833.5prime
GAAGTTATCAGTCGACATGCTGCGAGTGCTACTGCCATTGGTGGGCTGCC
TACTGGCCGTTCAAGCTGGCTCCGTGGAGGAGGTTTTCAGATCCCACCAG
GTGGTACCCGACGTTATTCCCGAGCCGCCGAACCAGTTGTTAAAGGTCAC
GTACAGCAACAACCTGGTGGCCAAGGATGGAGTGGAGCTAACGCCCACCC
AGGTTAAGGATCAGCCAGTCGTGGAGTGGGACGCGCAGCCCGGGGAGTTC
TACACGCTCATTATGACGGATCCCGATGCCCCCAGCCGAGCGGAGCCCAA
GTTCCGCGAGTTCAAGCACTGGATTCTGGCCAACATCGCCGGCAACGACT
TGGCAAGTGGTGAGCCCATCGCCGAGTACATTGGCTCCGGCCCGCCCCAG
GGCACGGGTCTGCATCGCTACGTCTTCCTGCTGTACAAGCAGTCCGGCAA
ACTTGAGTTCGACGAGGAGCGCGTGAGCAAGAGATCCCGCAAGGATCGCC
CCAAATTCAGTGCCGCCAAGTTTGCCATCAATCACGAGTTGGGCAATCCC
ATTGCTGGAACTTTCTACCAAGCCCAGTACGACGACTATGTTCCAAAACT
GCACAAGCAACTTTCGGAGAATGCAAGCTTTCTAGACC
BO06833.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17919-PA | 609 | CG17919-RA | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:12:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17919-RA | 778 | CG17919-RA | 93..698 | 17..622 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:12:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6344528..6345007 | 143..622 | 2400 | 100 | Plus |
3R | 32079331 | 3R | 6344121..6344251 | 17..147 | 655 | 100 | Plus |
3R | 32079331 | 3R | 22466273..22466447 | 268..442 | 215 | 74.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:12:28 has no hits.
BO06833.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:00:56 Download gff for
BO06833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-PA | 1..609 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:29 Download gff for
BO06833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-PA | 1..609 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:10 Download gff for
BO06833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 93..698 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:43 Download gff for
BO06833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 93..698 | 17..622 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:43 Download gff for
BO06833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6344121..6344249 | 17..145 | 100 | -> | Plus |
3R | 6344531..6345007 | 146..622 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:10 Download gff for
BO06833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2169843..2169971 | 17..145 | 100 | -> | Plus |
arm_3R | 2170253..2170729 | 146..622 | 100 | | Plus |
BO06833.complete Sequence
640 bp (640 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630553
> BO06833.complete
GAAGTTATCAGTCGACATGCTGCGAGTGCTACTGCCATTGGTGGGCTGCC
TACTGGCCGTTCAAGCTGGCTCCGTGGAGGAGGTTTTCAGATCCCACCAG
GTGGTACCCGACGTTATTCCCGAGCCGCCGAACCAGTTGTTAAAGGTCAC
GTACAGCAACAACCTGGTGGCCAAGGATGGAGTGGAGCTAACGCCCACCC
AGGTTAAGGATCAGCCAGTCGTGGAGTGGGACGCGCAGCCCGGGGAGTTC
TACACGCTCATTATGACGGATCCCGATGCCCCCAGCCGAGCGGAGCCCAA
GTTCCGCGAGTTCAAGCACTGGATTCTGGCCAACATCGCCGGCAACGACT
TGGCAAGTGGTGAGCCCATCGCCGAGTACATTGGCTCCGGCCCGCCCCAG
GGCACGGGTCTGCATCGCTACGTCTTCCTGCTGTACAAGCAGTCCGGCAA
ACTTGAGTTCGACGAGGAGCGCGTGAGCAAGAGATCCCGCAAGGATCGCC
CCAAATTCAGTGCCGCCAAGTTTGCCATCAATCACGAGTTGGGCAATCCC
ATTGCTGGAACTTTCTACCAAGCCCAGTACGACGACTATGTTCCAAAACT
GCACAAGCAACTTTCGGAGAATGCAAGCTTTCTAGACCAT
BO06833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17919-RA | 609 | CG17919-PA | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17919-RA | 778 | CG17919-RA | 93..698 | 17..622 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6344528..6345007 | 143..622 | 2400 | 100 | Plus |
3R | 32079331 | 3R | 6344121..6344251 | 17..147 | 655 | 100 | Plus |
3R | 32079331 | 3R | 22466273..22466447 | 268..442 | 215 | 74.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:51:02 has no hits.
BO06833.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:47 Download gff for
BO06833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 1..609 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:54 Download gff for
BO06833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 91..696 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:45 Download gff for
BO06833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 93..698 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:47 Download gff for
BO06833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 91..696 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:09 Download gff for
BO06833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17919-RA | 93..698 | 17..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:09 Download gff for
BO06833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6344121..6344249 | 17..145 | 100 | -> | Plus |
3R | 6344531..6345007 | 146..624 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:45 Download gff for
BO06833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2169843..2169971 | 17..145 | 100 | -> | Plus |
arm_3R | 2170253..2170729 | 146..624 | 99 | | Plus |
BO06833.pep Sequence
Translation from 16 to 640
> BO06833.pep
MLRVLLPLVGCLLAVQAGSVEEVFRSHQVVPDVIPEPPNQLLKVTYSNNL
VAKDGVELTPTQVKDQPVVEWDAQPGEFYTLIMTDPDAPSRAEPKFREFK
HWILANIAGNDLASGEPIAEYIGSGPPQGTGLHRYVFLLYKQSGKLEFDE
ERVSKRSRKDRPKFSAAKFAINHELGNPIAGTFYQAQYDDYVPKLHKQLS
ENASFLDH
BO06833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17919-PA | 202 | CG17919-PA | 1..202 | 1..202 | 1061 | 100 | Plus |
CG10298-PA | 187 | CG10298-PA | 8..184 | 24..200 | 564 | 57.6 | Plus |
CG6180-PA | 257 | CG6180-PA | 76..255 | 20..199 | 544 | 56.7 | Plus |
Pebp1-PA | 176 | CG18594-PA | 6..171 | 29..195 | 465 | 51.5 | Plus |
CG7054-PA | 179 | CG7054-PA | 4..177 | 29..199 | 457 | 50.3 | Plus |