Clone Sequence Records
BO06837.3prime Sequence
863 bp (727 high quality bases) assembled on 2005-12-03
> BO06837.3prime
ATGGTCTAGAAAGCTTGCATTGTTATTCTCGATGGCGGCCATCCGTTCGC
GCTCCTTGAGCAACCGCTCCCGACTGTCCTGCGGATTGAGCAGCACCTTG
ACCAGATGCTCCACCGTCGGCCGCTCGGCGGTGCAGTAAACCTTTTGGCC
CAGCGATTCGAGGGCACGCCTAGTGCTCGGCCCGATGGCCACCAGCTTCC
ATTTGTCCATCGATAGCTGACGGCTGGTGAAGTACTGCTGTGCACAATTG
ACGCCCGATGGCGAGAAGAAGGCAAGAAATTCAATCGACTCGCCATAAAT
CTCCAATGCCCTCTCCACATTGGCGCCCAATTCGGGATGACAGCGCGTCT
CGTACACTTCGCACGCATCCACGGAGAAGCCATTCTCGGCCAGCTTGGAT
AGCAGCGTATCGGTGGCCAGATTACCGCATGGCAATAGTAGCGGCAATGC
ACGCGATCCATCGAACGTATCCACTATATAGTCGCCCAATGCCCGGGCAT
TGCCCGTCTGTTTGCCGTGGGTGAATAGCTGGTCCAAGGTGCTTAGCGCC
AGATTGTGGGTCACCTCGCCGACGGCATAGTTATGCAACATCTTCCAACC
GCCGGGTAGCTCGCCGAGATTGAGGGATTCAGCCACGGCCTCCACGCAGC
GCGGCGATGTGAATATGATGCCGGCATATTTATCCGGATTCTGAAGCTTG
GCGCGCAGCTCATCGAGATTCTTGAAGCCGAAACTCAGCGTGGGCACAAA
GACGGGATTGAAATCGTGCTTCTCCAGCGTTTCTGCGTACACATCGCTGC
TTTCCGATTCCGATTTTGATATGATCACAGTTCGCTGGCGACTCGTCATG
TCGACTGATAACT
BO06837.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1885-PA | 834 | CG1885-RA | 1..831 | 849..19 | 4105 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1885-RB | 1711 | CG1885-RB | 205..1035 | 849..19 | 4125 | 99.8 | Minus |
CG1885-RA | 1229 | CG1885-RA | 205..1035 | 849..19 | 4125 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8899230..8900060 | 19..849 | 4125 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:20:38 has no hits.
BO06837.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:03 Download gff for
BO06837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-PA | 1..834 | 15..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:38 Download gff for
BO06837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-PA | 1..834 | 15..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:52 Download gff for
BO06837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 198..1038 | 15..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:44 Download gff for
BO06837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 198..1038 | 15..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:44 Download gff for
BO06837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8899227..8900067 | 15..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:52 Download gff for
BO06837.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8793260..8794100 | 15..857 | 99 | | Plus |
BO06837.5prime Sequence
863 bp (806 high quality bases) assembled on 2005-12-03
> BO06837.5prime
GAAGTTATCAGTCGACATGACGAGTCGCCAGCGAACTGTGATCATATTCA
AATCGGAATCGGAAAGCAGCGATGTGTACGCAGAAACGCTGGAGAAGCAC
GATTTCAATCCCGTCTTTGTGCCCACGCTGAGTTTCGGCTTCAAGAATCT
CGATGAGCTGCGCGCCAAGCTTCAGAATCCGGATAAATATGCCGGCATCA
TATTCACATCGCCGCGCTGCGTGGAGGCCGTGGCTGAATCCCTCAATCTC
GGCGAGCTACCCGGCGGTTGGAAGATGTTGCATAACTATGCCGTCGGCGA
GGTGACCCACAATCTGGCGCTAAGCACCTTGGACCAGCTATTCACCCACG
GCAAACAGACGGGCAATGCCCGGGCATTGGGCGACTATATAGTGGATACG
TTCGATGGATCGCGTGCATTGCCGCTACTATTGCCATGCGGTAATCTGGC
CACCGATACGCTGCTATCCAAGCTGGCCGAGAATGGCTTCTCCGTGGATG
CGTGCGAAGTGTACGAGACGCGCTGTCATCCCGAATTGGGCGCCAATGTG
GAGAGGGCATTGGAGATTTATGGCGAGTCGATTGAATTTCTTGCCTTCTT
CTCGCCATCGGGCGTCAATTGTGCACAGCAGTACTTCACCAGCCGTCAGC
TATCGATGGACAAATGGAAGCTGGTGGCCATCGGGCCGAGCACTAGGCGT
GCCCTCGAATCGCTGGGCCAAAAGGTTTACTGCACCGCCGAGCGGCCGAC
GGTGGAGCATCTGGTCAAGGTGCTGCTCAATCCGCAGGACAGTCGGGAGC
GGTTGCTCAAGGAGCGCGAACGGATGGCCGCCATCGAGAATAACAATGCA
AGCTTTCTAGACC
BO06837.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1885-PA | 834 | CG1885-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:12:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1885-RB | 1711 | CG1885-RB | 205..1035 | 17..847 | 4155 | 100 | Plus |
CG1885-RA | 1229 | CG1885-RA | 205..1035 | 17..847 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8899230..8900060 | 847..17 | 4155 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:12:47 has no hits.
BO06837.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:04 Download gff for
BO06837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-PA | 1..834 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:39 Download gff for
BO06837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-PA | 1..834 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:14 Download gff for
BO06837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 198..1038 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:46 Download gff for
BO06837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 198..1038 | 9..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:46 Download gff for
BO06837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8899227..8900067 | 9..851 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:14 Download gff for
BO06837.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8793260..8794100 | 9..851 | 99 | | Minus |
BO06837.complete Sequence
865 bp (865 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630554
> BO06837.complete
GAAGTTATCAGTCGACATGACGAGTCGCCAGCGAACTGTGATCATATTCA
AATCGGAATCGGAAAGCAGCGATGTGTACGCAGAAACGCTGGAGAAGCAC
GATTTCAATCCCGTCTTTGTGCCCACGCTGAGTTTCGGCTTCAAGAATCT
CGATGAGCTGCGCGCCAAGCTTCAGAATCCGGATAAATATGCCGGCATCA
TATTCACATCGCCGCGCTGCGTGGAGGCCGTGGCTGAATCCCTCAATCTC
GGCGAGCTACCCGGCGGTTGGAAGATGTTGCATAACTATGCCGTCGGCGA
GGTGACCCACAATCTGGCGCTAAGCACCTTGGACCAGCTATTCACCCACG
GCAAACAGACGGGCAATGCCCGGGCATTGGGCGACTATATAGTGGATACG
TTCGATGGATCGCGTGCATTGCCGCTACTATTGCCATGCGGTAATCTGGC
CACCGATACGCTGCTATCCAAGCTGGCCGAGAATGGCTTCTCCGTGGATG
CGTGCGAAGTGTACGAGACGCGCTGTCATCCCGAATTGGGCGCCAATGTG
GAGAGGGCATTGGAGATTTATGGCGAGTCGATTGAATTTCTTGCCTTCTT
CTCGCCATCGGGCGTCAATTGTGCACAGCAGTACTTCACCAGCCGTCAGC
TATCGATGGACAAATGGAAGCTGGTGGCCATCGGGCCGAGCACTAGGCGT
GCCCTCGAATCGCTGGGCCAAAAGGTTTACTGCACCGCCGAGCGGCCGAC
GGTGGAGCATCTGGTCAAGGTGCTGCTCAATCCGCAGGACAGTCGGGAGC
GGTTGCTCAAGGAGCGCGAACGGATGGCCGCCATCGAGAATAACAATGCA
AGCTTTCTAGACCAT
BO06837.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1885-RB | 834 | CG1885-PB | 1..831 | 17..847 | 4155 | 100 | Plus |
CG1885-RA | 834 | CG1885-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1885-RB | 1711 | CG1885-RB | 205..1035 | 17..847 | 4155 | 100 | Plus |
CG1885-RA | 1229 | CG1885-RA | 205..1035 | 17..847 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8899230..8900060 | 847..17 | 4155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:22:23 has no hits.
BO06837.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:48 Download gff for
BO06837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 1..834 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:56 Download gff for
BO06837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 112..952 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:15 Download gff for
BO06837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 205..1035 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:48 Download gff for
BO06837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 112..952 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:07 Download gff for
BO06837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1885-RA | 205..1035 | 17..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:07 Download gff for
BO06837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8899228..8900060 | 17..849 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:15 Download gff for
BO06837.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8793261..8794093 | 17..849 | 99 | | Minus |
BO06837.pep Sequence
Translation from 16 to 865
> BO06837.pep
MTSRQRTVIIFKSESESSDVYAETLEKHDFNPVFVPTLSFGFKNLDELRA
KLQNPDKYAGIIFTSPRCVEAVAESLNLGELPGGWKMLHNYAVGEVTHNL
ALSTLDQLFTHGKQTGNARALGDYIVDTFDGSRALPLLLPCGNLATDTLL
SKLAENGFSVDACEVYETRCHPELGANVERALEIYGESIEFLAFFSPSGV
NCAQQYFTSRQLSMDKWKLVAIGPSTRRALESLGQKVYCTAERPTVEHLV
KVLLNPQDSRERLLKERERMAAIENNNASFLDH
BO06837.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1885-PB | 277 | CG1885-PB | 1..277 | 1..277 | 1433 | 100 | Plus |
CG1885-PA | 277 | CG1885-PA | 1..277 | 1..277 | 1433 | 100 | Plus |
CG9589-PA | 253 | CG9589-PA | 1..251 | 1..253 | 513 | 41.9 | Plus |