Clone BO06837 Report

Search the DGRC for BO06837

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG1885-RA
Protein status:BO06837.pep: validated full length
Sequenced Size:865

Clone Sequence Records

BO06837.3prime Sequence

863 bp (727 high quality bases) assembled on 2005-12-03

> BO06837.3prime
ATGGTCTAGAAAGCTTGCATTGTTATTCTCGATGGCGGCCATCCGTTCGC
GCTCCTTGAGCAACCGCTCCCGACTGTCCTGCGGATTGAGCAGCACCTTG
ACCAGATGCTCCACCGTCGGCCGCTCGGCGGTGCAGTAAACCTTTTGGCC
CAGCGATTCGAGGGCACGCCTAGTGCTCGGCCCGATGGCCACCAGCTTCC
ATTTGTCCATCGATAGCTGACGGCTGGTGAAGTACTGCTGTGCACAATTG
ACGCCCGATGGCGAGAAGAAGGCAAGAAATTCAATCGACTCGCCATAAAT
CTCCAATGCCCTCTCCACATTGGCGCCCAATTCGGGATGACAGCGCGTCT
CGTACACTTCGCACGCATCCACGGAGAAGCCATTCTCGGCCAGCTTGGAT
AGCAGCGTATCGGTGGCCAGATTACCGCATGGCAATAGTAGCGGCAATGC
ACGCGATCCATCGAACGTATCCACTATATAGTCGCCCAATGCCCGGGCAT
TGCCCGTCTGTTTGCCGTGGGTGAATAGCTGGTCCAAGGTGCTTAGCGCC
AGATTGTGGGTCACCTCGCCGACGGCATAGTTATGCAACATCTTCCAACC
GCCGGGTAGCTCGCCGAGATTGAGGGATTCAGCCACGGCCTCCACGCAGC
GCGGCGATGTGAATATGATGCCGGCATATTTATCCGGATTCTGAAGCTTG
GCGCGCAGCTCATCGAGATTCTTGAAGCCGAAACTCAGCGTGGGCACAAA
GACGGGATTGAAATCGTGCTTCTCCAGCGTTTCTGCGTACACATCGCTGC
TTTCCGATTCCGATTTTGATATGATCACAGTTCGCTGGCGACTCGTCATG
TCGACTGATAACT

BO06837.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-PA 834 CG1885-RA 1..831 849..19 4105 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-RB 1711 CG1885-RB 205..1035 849..19 4125 99.8 Minus
CG1885-RA 1229 CG1885-RA 205..1035 849..19 4125 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8899230..8900060 19..849 4125 99.8 Plus
Blast to na_te.dros performed on 2015-02-09 19:20:38 has no hits.

BO06837.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:03 Download gff for BO06837.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-PA 1..834 15..849 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:38 Download gff for BO06837.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-PA 1..834 15..849 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:52 Download gff for BO06837.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 198..1038 15..857 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:44 Download gff for BO06837.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 198..1038 15..857 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:44 Download gff for BO06837.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8899227..8900067 15..857 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:52 Download gff for BO06837.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8793260..8794100 15..857 99   Plus

BO06837.5prime Sequence

863 bp (806 high quality bases) assembled on 2005-12-03

> BO06837.5prime
GAAGTTATCAGTCGACATGACGAGTCGCCAGCGAACTGTGATCATATTCA
AATCGGAATCGGAAAGCAGCGATGTGTACGCAGAAACGCTGGAGAAGCAC
GATTTCAATCCCGTCTTTGTGCCCACGCTGAGTTTCGGCTTCAAGAATCT
CGATGAGCTGCGCGCCAAGCTTCAGAATCCGGATAAATATGCCGGCATCA
TATTCACATCGCCGCGCTGCGTGGAGGCCGTGGCTGAATCCCTCAATCTC
GGCGAGCTACCCGGCGGTTGGAAGATGTTGCATAACTATGCCGTCGGCGA
GGTGACCCACAATCTGGCGCTAAGCACCTTGGACCAGCTATTCACCCACG
GCAAACAGACGGGCAATGCCCGGGCATTGGGCGACTATATAGTGGATACG
TTCGATGGATCGCGTGCATTGCCGCTACTATTGCCATGCGGTAATCTGGC
CACCGATACGCTGCTATCCAAGCTGGCCGAGAATGGCTTCTCCGTGGATG
CGTGCGAAGTGTACGAGACGCGCTGTCATCCCGAATTGGGCGCCAATGTG
GAGAGGGCATTGGAGATTTATGGCGAGTCGATTGAATTTCTTGCCTTCTT
CTCGCCATCGGGCGTCAATTGTGCACAGCAGTACTTCACCAGCCGTCAGC
TATCGATGGACAAATGGAAGCTGGTGGCCATCGGGCCGAGCACTAGGCGT
GCCCTCGAATCGCTGGGCCAAAAGGTTTACTGCACCGCCGAGCGGCCGAC
GGTGGAGCATCTGGTCAAGGTGCTGCTCAATCCGCAGGACAGTCGGGAGC
GGTTGCTCAAGGAGCGCGAACGGATGGCCGCCATCGAGAATAACAATGCA
AGCTTTCTAGACC

BO06837.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-PA 834 CG1885-RA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-RB 1711 CG1885-RB 205..1035 17..847 4155 100 Plus
CG1885-RA 1229 CG1885-RA 205..1035 17..847 4155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8899230..8900060 847..17 4155 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:12:47 has no hits.

BO06837.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:04 Download gff for BO06837.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-PA 1..834 17..851 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:39 Download gff for BO06837.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-PA 1..834 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:14 Download gff for BO06837.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 198..1038 9..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:46 Download gff for BO06837.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 198..1038 9..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:46 Download gff for BO06837.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8899227..8900067 9..851 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:14 Download gff for BO06837.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8793260..8794100 9..851 99   Minus

BO06837.complete Sequence

865 bp (865 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630554

> BO06837.complete
GAAGTTATCAGTCGACATGACGAGTCGCCAGCGAACTGTGATCATATTCA
AATCGGAATCGGAAAGCAGCGATGTGTACGCAGAAACGCTGGAGAAGCAC
GATTTCAATCCCGTCTTTGTGCCCACGCTGAGTTTCGGCTTCAAGAATCT
CGATGAGCTGCGCGCCAAGCTTCAGAATCCGGATAAATATGCCGGCATCA
TATTCACATCGCCGCGCTGCGTGGAGGCCGTGGCTGAATCCCTCAATCTC
GGCGAGCTACCCGGCGGTTGGAAGATGTTGCATAACTATGCCGTCGGCGA
GGTGACCCACAATCTGGCGCTAAGCACCTTGGACCAGCTATTCACCCACG
GCAAACAGACGGGCAATGCCCGGGCATTGGGCGACTATATAGTGGATACG
TTCGATGGATCGCGTGCATTGCCGCTACTATTGCCATGCGGTAATCTGGC
CACCGATACGCTGCTATCCAAGCTGGCCGAGAATGGCTTCTCCGTGGATG
CGTGCGAAGTGTACGAGACGCGCTGTCATCCCGAATTGGGCGCCAATGTG
GAGAGGGCATTGGAGATTTATGGCGAGTCGATTGAATTTCTTGCCTTCTT
CTCGCCATCGGGCGTCAATTGTGCACAGCAGTACTTCACCAGCCGTCAGC
TATCGATGGACAAATGGAAGCTGGTGGCCATCGGGCCGAGCACTAGGCGT
GCCCTCGAATCGCTGGGCCAAAAGGTTTACTGCACCGCCGAGCGGCCGAC
GGTGGAGCATCTGGTCAAGGTGCTGCTCAATCCGCAGGACAGTCGGGAGC
GGTTGCTCAAGGAGCGCGAACGGATGGCCGCCATCGAGAATAACAATGCA
AGCTTTCTAGACCAT

BO06837.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-RB 834 CG1885-PB 1..831 17..847 4155 100 Plus
CG1885-RA 834 CG1885-PA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-RB 1711 CG1885-RB 205..1035 17..847 4155 100 Plus
CG1885-RA 1229 CG1885-RA 205..1035 17..847 4155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8899230..8900060 847..17 4155 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:22:23 has no hits.

BO06837.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:48 Download gff for BO06837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 1..834 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:56 Download gff for BO06837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 112..952 9..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:15 Download gff for BO06837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 205..1035 17..849 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:48 Download gff for BO06837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 112..952 9..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:07 Download gff for BO06837.complete
Subject Subject Range Query Range Percent Splice Strand
CG1885-RA 205..1035 17..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:07 Download gff for BO06837.complete
Subject Subject Range Query Range Percent Splice Strand
X 8899228..8900060 17..849 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:15 Download gff for BO06837.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8793261..8794093 17..849 99   Minus

BO06837.pep Sequence

Translation from 16 to 865

> BO06837.pep
MTSRQRTVIIFKSESESSDVYAETLEKHDFNPVFVPTLSFGFKNLDELRA
KLQNPDKYAGIIFTSPRCVEAVAESLNLGELPGGWKMLHNYAVGEVTHNL
ALSTLDQLFTHGKQTGNARALGDYIVDTFDGSRALPLLLPCGNLATDTLL
SKLAENGFSVDACEVYETRCHPELGANVERALEIYGESIEFLAFFSPSGV
NCAQQYFTSRQLSMDKWKLVAIGPSTRRALESLGQKVYCTAERPTVEHLV
KVLLNPQDSRERLLKERERMAAIENNNASFLDH

BO06837.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1885-PB 277 CG1885-PB 1..277 1..277 1433 100 Plus
CG1885-PA 277 CG1885-PA 1..277 1..277 1433 100 Plus
CG9589-PA 253 CG9589-PA 1..251 1..253 513 41.9 Plus