Clone Sequence Records
BO06838.3prime Sequence
839 bp (768 high quality bases) assembled on 2005-12-03
> BO06838.3prime
ATGGTCTAGAAAGCTTGCGTTGCGCTGCAGGGCGAATGCCACGATGGCCA
GGAGCAGGGTGGCCAGAATGGAGCTCTGGAGCGCCGAGCTGCCGTTACAG
GCGTTCATACTGCACGGATTGCAGTTGGCCAGCTCCGTGTTTTTGTTCTG
AATCTTTAGCTGCTCGCAAACACCTTCCATGGTGCTCACCCGGGAGCAGC
CGCGATCCGTCGACATTGTGCCATTCACTGAAACCTGAACGGAATAGCAG
TGGTAGGTGTAGTCGGTATCGATCACCGCCCTGCGTTGCCTGATTGCCAG
CGATGACGTGGGCGTTGTGGTCCCCTCGTCCTTATTCACTGGCACCAAAC
GGGTGGTGTTCAAGGCCACCGACATGGCGGACAGATCCTCAGCGGGTGGC
GTGGGCACTCCGGTGGTCGTTTCGACGGGTCCGGCGGTTCCCGGCGTGGG
TATCGGAGCCTCGGTGCTTTCAGTGCTCTGGGTGCTCTCGGTGGTCGGAT
CGCTGGTGGTGGTTTCCACTGTCGTCGTCGTGGACTCCGTTGTGGGTGAA
TCCGTTTGGACACTTGTCACAATCAAAGTGGTTGTTTCCGGTGTTGTTGT
AGTCTCCTGCGTCGTAGTGGTGCTCGCTTCGGTGGTGGTCACCGTGGAGG
CTTCTGTGCTGCCGCCGGGATTAAAGAAATCCTCATTGCACGCCAGCAGG
GGTGCATCCTTCGGTAGCTGGGCACAATTATCGCACACATAGCACATGAG
ATCGGCGCGAATTACTGGCAGGGCGATTAACAACAGCAAAGAGCTGGCCA
AAACGATGTGACTTTTGGGGAACATGTCGACTGATAACT
BO06838.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7778-PA | 810 | CG7778-RA | 1..807 | 825..19 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7778-RB | 2152 | CG7778-RB | 185..992 | 826..19 | 4040 | 100 | Minus |
CG7778-RA | 1237 | CG7778-RA | 185..992 | 826..19 | 4040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8349072..8349611 | 767..228 | 2700 | 100 | Minus |
2L | 23513712 | 2L | 8349742..8349952 | 229..19 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 8346804..8346865 | 826..765 | 310 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 03:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2463 | 667..581 | 113 | 60.2 | Minus |
BO06838.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:05 Download gff for
BO06838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7778-PA | 1..810 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:40 Download gff for
BO06838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7778-PA | 1..810 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:54:10 Download gff for
BO06838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7778-RA | 185..992 | 19..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:37 Download gff for
BO06838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7778-RA | 185..992 | 19..826 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:37 Download gff for
BO06838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8346804..8346865 | 765..826 | 100 | -> | Minus |
2L | 8349075..8349611 | 228..764 | 100 | -> | Minus |
2L | 8349744..8349952 | 19..227 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:54:10 Download gff for
BO06838.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8346804..8346865 | 765..826 | 100 | -> | Minus |
arm_2L | 8349075..8349611 | 228..764 | 100 | -> | Minus |
arm_2L | 8349744..8349952 | 19..227 | 100 | | Minus |
BO06838.5prime Sequence
839 bp (828 high quality bases) assembled on 2005-12-03
> BO06838.5prime
GAAGTTATCAGTCGACATGTTCCCCAAAAGTCACATCGTTTTGGCCAGCT
CTTTGCTGTTGTTAATCGCCCTGCCAGTAATTCGCGCCGATCTCATGTGC
TATGTGTGCGATAATTGTGCCCAGCTACCGAAGGATGCACCCCTGCTGGC
GTGCAATGAGGATTTCTTTAATCCCGGCGGCAGCACAGAAGCCTCCACGG
TGACCACCACCGAAGCGAGCACCACTACGACGCAGGAGACTACAACAACA
CCGGAAACAACCACTTTGATTGTGACAAGTGTCCAAACGGATTCACCCAC
AACGGAGTCCACGACGACGACAGTGGAAACCACCACCAGCGATCCGACCA
CCGAGAGCACCCAGAGCACTGAAAGCACCGAGGCTCCGATACCCACGCCG
GGAACCGCCGGACCCGTCGAAACGACCACCGGAGTGCCCACGCCACCCGC
TGAGGATCTGTCCGCCATGTCGGTGGCCTTGAACACCACCCGTTTGGTGC
CAGTGAATAAGGACGAGGGGACCACAACGCCCACGTCATCGCTGGCAATC
AGGCAACGCAGGGCGGTGATCGATACCGACTACACCTACCACTGCTATTC
CGTTCAGGTTTCAGTGAATGGCACAATGTCGACGGATCGCGGCTGCTCCC
GGGTGAGCACCATGGAAGGTGTTTGCGAGCAGCTAAAGATTCAGAACAAA
AACACGGAGCTGGCCAACTGCAATCCGTGCAGTATGAACGCCTGTAACGG
CAGCTCGGCGCTCCAGAGCTCCATTCTGGCCACCCTGCTCCTGGCCATCG
TGGCATTCGCCCTGCAGCGCAACGCAAGCTTTCTAGACC
BO06838.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7778-PA | 810 | CG7778-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7778-RB | 2152 | CG7778-RB | 185..992 | 16..823 | 4040 | 100 | Plus |
CG7778-RA | 1237 | CG7778-RA | 185..992 | 16..823 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8349072..8349611 | 75..614 | 2700 | 100 | Plus |
2L | 23513712 | 2L | 8349742..8349952 | 613..823 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 8346804..8346865 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 01:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2463 | 175..261 | 113 | 60.2 | Plus |
BO06838.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:06 Download gff for
BO06838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7778-PA | 1..810 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:42 Download gff for
BO06838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7778-PA | 1..810 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:14 Download gff for
BO06838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7778-RA | 185..992 | 16..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:12:09 Download gff for
BO06838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7778-RA | 185..992 | 16..823 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:12:09 Download gff for
BO06838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8346804..8346865 | 16..77 | 100 | -> | Plus |
2L | 8349075..8349611 | 78..614 | 100 | -> | Plus |
2L | 8349744..8349952 | 615..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:14 Download gff for
BO06838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8346804..8346865 | 16..77 | 100 | -> | Plus |
arm_2L | 8349075..8349611 | 78..614 | 100 | -> | Plus |
arm_2L | 8349744..8349952 | 615..823 | 100 | | Plus |
BO06838.complete Sequence
841 bp (841 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630555
> BO06838.complete
GAAGTTATCAGTCGACATGTTCCCCAAAAGTCACATCGTTTTGGCCAGCT
CTTTGCTGTTGTTAATCGCCCTGCCAGTAATTCGCGCCGATCTCATGTGC
TATGTGTGCGATAATTGTGCCCAGCTACCGAAGGATGCACCCCTGCTGGC
GTGCAATGAGGATTTCTTTAATCCCGGCGGCAGCACAGAAGCCTCCACGG
TGACCACCACCGAAGCGAGCACCACTACGACGCAGGAGACTACAACAACA
CCGGAAACAACCACTTTGATTGTGACAAGTGTCCAAACGGATTCACCCAC
AACGGAGTCCACGACGACGACAGTGGAAACCACCACCAGCGATCCGACCA
CCGAGAGCACCCAGAGCACTGAAAGCACCGAGGCTCCGATACCCACGCCG
GGAACCGCCGGACCCGTCGAAACGACCACCGGAGTGCCCACGCCACCCGC
TGAGGATCTGTCCGCCATGTCGGTGGCCTTGAACACCACCCGTTTGGTGC
CAGTGAATAAGGACGAGGGGACCACAACGCCCACGTCATCGCTGGCAATC
AGGCAACGCAGGGCGGTGATCGATACCGACTACACCTACCACTGCTATTC
CGTTCAGGTTTCAGTGAATGGCACAATGTCGACGGATCGCGGCTGCTCCC
GGGTGAGCACCATGGAAGGTGTTTGCGAGCAGCTAAAGATTCAGAACAAA
AACACGGAGCTGGCCAACTGCAATCCGTGCAGTATGAACGCCTGTAACGG
CAGCTCGGCGCTCCAGAGCTCCATTCTGGCCACCCTGCTCCTGGCCATCG
TGGCATTCGCCCTGCAGCGCAACGCAAGCTTTCTAGACCAT
BO06838.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7778-RB | 810 | CG7778-PB | 1..807 | 17..823 | 4035 | 100 | Plus |
CG7778-RA | 810 | CG7778-PA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7778-RB | 2152 | CG7778-RB | 185..992 | 16..823 | 4040 | 100 | Plus |
CG7778-RA | 1237 | CG7778-RA | 185..992 | 16..823 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8349072..8349611 | 75..614 | 2700 | 100 | Plus |
2L | 23513712 | 2L | 8349742..8349952 | 613..823 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 8346804..8346865 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:59:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2463 | 175..261 | 113 | 60.2 | Plus |
BO06838.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:50 Download gff for
BO06838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7778-RA | 1..810 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:58 Download gff for
BO06838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7778-RA | 184..991 | 16..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:07 Download gff for
BO06838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7778-RA | 191..992 | 22..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:50 Download gff for
BO06838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7778-RA | 184..991 | 16..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:31 Download gff for
BO06838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7778-RA | 191..992 | 22..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:31 Download gff for
BO06838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8346810..8346865 | 22..77 | 100 | -> | Plus |
2L | 8349075..8349611 | 78..614 | 100 | -> | Plus |
2L | 8349744..8349952 | 615..825 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:07 Download gff for
BO06838.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8346810..8346865 | 22..77 | 100 | -> | Plus |
arm_2L | 8349075..8349611 | 78..614 | 100 | -> | Plus |
arm_2L | 8349744..8349952 | 615..825 | 99 | | Plus |
BO06838.pep Sequence
Translation from 16 to 841
> BO06838.pep
MFPKSHIVLASSLLLLIALPVIRADLMCYVCDNCAQLPKDAPLLACNEDF
FNPGGSTEASTVTTTEASTTTTQETTTTPETTTLIVTSVQTDSPTTESTT
TTVETTTSDPTTESTQSTESTEAPIPTPGTAGPVETTTGVPTPPAEDLSA
MSVALNTTRLVPVNKDEGTTTPTSSLAIRQRRAVIDTDYTYHCYSVQVSV
NGTMSTDRGCSRVSTMEGVCEQLKIQNKNTELANCNPCSMNACNGSSALQ
SSILATLLLAIVAFALQRNASFLDH
BO06838.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7778-PB | 269 | CG7778-PB | 1..269 | 1..269 | 1372 | 100 | Plus |
CG7778-PA | 269 | CG7778-PA | 1..269 | 1..269 | 1372 | 100 | Plus |
Muc96D-PA | 881 | CG31439-PA | 575..735 | 60..220 | 198 | 31.7 | Plus |
Muc96D-PA | 881 | CG31439-PA | 424..541 | 56..173 | 194 | 39 | Plus |
Muc96D-PA | 881 | CG31439-PA | 438..599 | 56..220 | 192 | 31.9 | Plus |
Muc4B-PC | 496 | CG32774-PC | 246..399 | 56..197 | 192 | 35.1 | Plus |
Muc4B-PB | 496 | CG32774-PB | 246..399 | 56..197 | 192 | 35.1 | Plus |
Muc96D-PA | 881 | CG31439-PA | 152..311 | 56..215 | 190 | 30.6 | Plus |
Muc96D-PA | 881 | CG31439-PA | 228..387 | 56..215 | 190 | 31.2 | Plus |
Muc96D-PA | 881 | CG31439-PA | 185..344 | 56..215 | 189 | 30.6 | Plus |
Muc96D-PA | 881 | CG31439-PA | 325..440 | 60..175 | 189 | 38.8 | Plus |
Muc96D-PA | 881 | CG31439-PA | 492..656 | 53..220 | 189 | 30.4 | Plus |
Muc96D-PA | 881 | CG31439-PA | 408..564 | 56..215 | 188 | 31.9 | Plus |
Muc96D-PA | 881 | CG31439-PA | 168..327 | 56..215 | 187 | 30.6 | Plus |
Muc96D-PA | 881 | CG31439-PA | 206..382 | 53..220 | 187 | 30.5 | Plus |
Muc96D-PA | 881 | CG31439-PA | 346..505 | 56..215 | 186 | 30.6 | Plus |
Muc96D-PA | 881 | CG31439-PA | 538..738 | 56..256 | 186 | 26.9 | Plus |
Muc96D-PA | 881 | CG31439-PA | 201..360 | 56..215 | 185 | 30.6 | Plus |
Muc96D-PA | 881 | CG31439-PA | 268..435 | 56..220 | 185 | 31.5 | Plus |
Muc96D-PA | 881 | CG31439-PA | 291..460 | 53..220 | 185 | 31.2 | Plus |
Muc96D-PA | 881 | CG31439-PA | 143..343 | 56..256 | 184 | 26.4 | Plus |
Muc96D-PA | 881 | CG31439-PA | 601..763 | 53..222 | 181 | 31.8 | Plus |
Muc96D-PA | 881 | CG31439-PA | 357..544 | 53..237 | 180 | 27.7 | Plus |
Muc96D-PA | 881 | CG31439-PA | 138..252 | 56..175 | 178 | 37.5 | Plus |
Muc4B-PC | 496 | CG32774-PC | 224..383 | 58..215 | 178 | 33.3 | Plus |
Muc96D-PA | 881 | CG31439-PA | 353..517 | 56..220 | 177 | 31.3 | Plus |
Muc96D-PA | 881 | CG31439-PA | 281..481 | 56..256 | 175 | 26.3 | Plus |
Muc96D-PA | 881 | CG31439-PA | 112..310 | 56..256 | 174 | 26.4 | Plus |
Muc96D-PA | 881 | CG31439-PA | 336..495 | 56..215 | 174 | 29.4 | Plus |
Muc96D-PA | 881 | CG31439-PA | 462..587 | 53..175 | 173 | 35.7 | Plus |
Muc96D-PA | 881 | CG31439-PA | 475..634 | 56..215 | 173 | 30 | Plus |
Muc96D-PA | 881 | CG31439-PA | 502..661 | 56..215 | 172 | 29.4 | Plus |
Muc4B-PC | 496 | CG32774-PC | 183..321 | 61..175 | 168 | 38.8 | Plus |
Muc96D-PA | 881 | CG31439-PA | 646..783 | 56..205 | 167 | 34.7 | Plus |
Muc96D-PA | 881 | CG31439-PA | 689..803 | 56..165 | 164 | 36.5 | Plus |
Muc96D-PA | 881 | CG31439-PA | 667..786 | 56..178 | 161 | 35 | Plus |