Clone Sequence Records
BO06842.3prime Sequence
818 bp (817 high quality bases) assembled on 2005-12-03
> BO06842.3prime
ATGGTCTAGAAAGCTTGCGCCAAATCGGCGGCGGTAGTGGCGCCACATAT
CGCAGATGGCCGGCTTGAGCAGGCAGTTGCACTCGATGGGTCGAGGATCC
GGGAAGGGATCGCGTCGACACTCGGAGAAACTTGGATACTTGGTCTTGGG
TCTCTGGCCACAACGTCTAAAGGGACGACGGCACTTGGGCGGATCGCGGG
CGGCCACACAGCAGTTGGGCATTCTGAAGCGCGGACATTTCGATGATTCC
TTAACGCAGGGTTTGATGAGGTTAAGCTCCAGTTTGCCCAATACACACAA
ATCCTCGGGGCAGCGGGGCTTTTTCGACTTGCGCTTGCGCCGCGGCATCG
GTGGCGGTACGGGGACGCAGTGGGCCTTCCGCTTCCGCCGCTTGACCACA
CATTCGAACCAGGTGCGCGGATACTTTCGTTTGCCCATGTCCGAGGGCTT
ATAGTGGGTGAGATCGATGGCCAACATCTCGGTGGCGCAGGGGTCTTCTA
AACAACTTTTGCGCGAATCGATAAAGGCGTGCATCTGAAACTCTGGATCC
GAACGGCACTTGTATTCGGTCCGCCGCGTCGTTTGCCAACAGGCATCGTA
TACCTTTGATCTGTCTTTCTTCTCCAACGGCTTTAGGTCCTTGCGCGGCA
GCAAGGGCGCCGGATAGCCACTCTCCCAGCCATCCTGGGAGTACAAATTG
CCCTCGGAGTTAAAGTGGCGAAACGAAGACGGAGGCAGAAAGCCTAAAAC
CTGCTTTTGCAGCAAGTGAGACATGCCAATCAGCGGTTTGCTTTTGGCAA
GCATGTCGACTGATAACT
BO06842.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4691-PA | 789 | CG4691-RA | 1..786 | 804..19 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4691-RA | 1158 | CG4691-RA | 205..990 | 804..19 | 3930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14760971..14761756 | 804..19 | 3930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:31:27 has no hits.
BO06842.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:11 Download gff for
BO06842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4691-PA | 1..789 | 15..804 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:49 Download gff for
BO06842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4691-PA | 1..789 | 15..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:40 Download gff for
BO06842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4691-RA | 205..993 | 15..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:47 Download gff for
BO06842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4691-RA | 205..993 | 15..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:47 Download gff for
BO06842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14760972..14761759 | 15..803 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:40 Download gff for
BO06842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14760972..14761759 | 15..803 | 99 | | Minus |
BO06842.5prime Sequence
818 bp (817 high quality bases) assembled on 2005-12-03
> BO06842.5prime
GAAGTTATCAGTCGACATGCTTGCCAAAAGCAAACCGCTGATTGGCATGT
CTCACTTGCTGCAAAAGCAGGTTTTAGGCTTTCTGCCTCCGTCTTCGTTT
CGCCACTTTAACTCCGAGGGCAATTTGTACTCCCAGGATGGCTGGGAGAG
TGGCTATCCGGCGCCCTTGCTGCCGCGCAAGGACCTAAAGCCGTTGGAGA
AGAAAGACAGATCAAAGGTATACGATGCCTGTTGGCAAACGACGCGGCGG
ACCGAATACAAGTGCCGTTCGGATCCAGAGTTTCAGATGCACGCCTTTAT
CGATTCGCGCAAAAGTTGTTTAGAAGACCCCTGCGCCACCGAGATGTTGG
CCATCGATCTCACCCACTATAAGCCCTCGGACATGGGCAAACGAAAGTAT
CCGCGCACCTGGTTCGAATGTGTGGTCAAGCGGCGGAAGCGGAAGGCCCA
CTGCGTCCCCGTACCGCCACCGATGCCGCGGCGCAAGCGCAAGTCGAAAA
AGCCCCGCTGCCCCGAGGATTTGTGTGTATTGGGCAAACTGGAGCTTAAC
CTCATCAAACCCTGCGTTAAGGAATCATCGAAATGTCCGCGCTTCAGAAT
GCCCAACTGCTGTGTGGCCGCCCGCGATCCGCCCAAGTGCCGTCGTCCCT
TTAGACGTTGTGGCCAGAGACCCAAGACCAAGTATCCAAGTTTCTCCGAG
TGTCGACGCGATCCCTTCCCGGATCCTCGACCCATCGAGTGCAACTGCCT
GCTCAAGCCGGCCATCTGCGATATGTGGCGCCACTACCGCCGCCGATTTG
GCGCAAGCTTTCTAGACC
BO06842.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4691-PA | 789 | CG4691-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4691-RA | 1158 | CG4691-RA | 205..990 | 17..802 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14760971..14761756 | 17..802 | 3930 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:04:54 has no hits.
BO06842.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:12 Download gff for
BO06842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4691-PA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:50 Download gff for
BO06842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4691-PA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:59 Download gff for
BO06842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4691-RA | 205..993 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:51 Download gff for
BO06842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4691-RA | 205..993 | 17..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:51 Download gff for
BO06842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14760972..14761759 | 18..806 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:59 Download gff for
BO06842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14760972..14761759 | 18..806 | 99 | | Plus |
BO06842.complete Sequence
820 bp (820 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630557
> BO06842.complete
GAAGTTATCAGTCGACATGCTTGCCAAAAGCAAACCGCTGATTGGCATGT
CTCACTTGCTGCAAAAGCAGGTTTTAGGCTTTCTGCCTCCGTCTTCGTTT
CGCCACTTTAACTCCGAGGGCAATTTGTACTCCCAGGATGGCTGGGAGAG
TGGCTATCCGGCGCCCTTGCTGCCGCGCAAGGACCTAAAGCCGTTGGAGA
AGAAAGACAGATCAAAGGTATACGATGCCTGTTGGCAAACGACGCGGCGG
ACCGAATACAAGTGCCGTTCGGATCCAGAGTTTCAGATGCACGCCTTTAT
CGATTCGCGCAAAAGTTGTTTAGAAGACCCCTGCGCCACCGAGATGTTGG
CCATCGATCTCACCCACTATAAGCCCTCGGACATGGGCAAACGAAAGTAT
CCGCGCACCTGGTTCGAATGTGTGGTCAAGCGGCGGAAGCGGAAGGCCCA
CTGCGTCCCCGTACCGCCACCGATGCCGCGGCGCAAGCGCAAGTCGAAAA
AGCCCCGCTGCCCCGAGGATTTGTGTGTATTGGGCAAACTGGAGCTTAAC
CTCATCAAACCCTGCGTTAAGGAATCATCGAAATGTCCGCGCTTCAGAAT
GCCCAACTGCTGTGTGGCCGCCCGCGATCCGCCCAAGTGCCGTCGTCCCT
TTAGACGTTGTGGCCAGAGACCCAAGACCAAGTATCCAAGTTTCTCCGAG
TGTCGACGCGATCCCTTCCCGGATCCTCGACCCATCGAGTGCAACTGCCT
GCTCAAGCCGGCCATCTGCGATATGTGGCGCCACTACCGCCGCCGATTTG
GCGCAAGCTTTCTAGACCAT
BO06842.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4691-RA | 789 | CG4691-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4691-RA | 1158 | CG4691-RA | 205..990 | 17..802 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14760971..14761756 | 17..802 | 3930 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:21:29 has no hits.
BO06842.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:33 Download gff for
BO06842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4691-RA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:38 Download gff for
BO06842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4691-RA | 205..993 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:07 Download gff for
BO06842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4691-RA | 205..990 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:33 Download gff for
BO06842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4691-RA | 205..993 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:35 Download gff for
BO06842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4691-RA | 205..990 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:35 Download gff for
BO06842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14760971..14761756 | 17..804 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:07 Download gff for
BO06842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14760971..14761756 | 17..804 | 99 | | Plus |
BO06842.pep Sequence
Translation from 16 to 820
> BO06842.pep
MLAKSKPLIGMSHLLQKQVLGFLPPSSFRHFNSEGNLYSQDGWESGYPAP
LLPRKDLKPLEKKDRSKVYDACWQTTRRTEYKCRSDPEFQMHAFIDSRKS
CLEDPCATEMLAIDLTHYKPSDMGKRKYPRTWFECVVKRRKRKAHCVPVP
PPMPRRKRKSKKPRCPEDLCVLGKLELNLIKPCVKESSKCPRFRMPNCCV
AARDPPKCRRPFRRCGQRPKTKYPSFSECRRDPFPDPRPIECNCLLKPAI
CDMWRHYRRRFGASFLDH
BO06842.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4691-PA | 262 | CG4691-PA | 1..262 | 1..262 | 1478 | 100 | Plus |
boly-PA | 255 | CG30362-PA | 33..253 | 41..260 | 487 | 47.3 | Plus |
CG8701-PA | 246 | CG8701-PA | 64..231 | 84..259 | 272 | 35.7 | Plus |
CG2127-PB | 289 | CG2127-PB | 130..275 | 114..260 | 252 | 39.5 | Plus |
CG2127-PA | 305 | CG2127-PA | 146..291 | 114..260 | 252 | 39.5 | Plus |