Clone BO06842 Report

Search the DGRC for BO06842

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG4691-RA
Protein status:BO06842.pep: validated full length
Sequenced Size:820

Clone Sequence Records

BO06842.3prime Sequence

818 bp (817 high quality bases) assembled on 2005-12-03

> BO06842.3prime
ATGGTCTAGAAAGCTTGCGCCAAATCGGCGGCGGTAGTGGCGCCACATAT
CGCAGATGGCCGGCTTGAGCAGGCAGTTGCACTCGATGGGTCGAGGATCC
GGGAAGGGATCGCGTCGACACTCGGAGAAACTTGGATACTTGGTCTTGGG
TCTCTGGCCACAACGTCTAAAGGGACGACGGCACTTGGGCGGATCGCGGG
CGGCCACACAGCAGTTGGGCATTCTGAAGCGCGGACATTTCGATGATTCC
TTAACGCAGGGTTTGATGAGGTTAAGCTCCAGTTTGCCCAATACACACAA
ATCCTCGGGGCAGCGGGGCTTTTTCGACTTGCGCTTGCGCCGCGGCATCG
GTGGCGGTACGGGGACGCAGTGGGCCTTCCGCTTCCGCCGCTTGACCACA
CATTCGAACCAGGTGCGCGGATACTTTCGTTTGCCCATGTCCGAGGGCTT
ATAGTGGGTGAGATCGATGGCCAACATCTCGGTGGCGCAGGGGTCTTCTA
AACAACTTTTGCGCGAATCGATAAAGGCGTGCATCTGAAACTCTGGATCC
GAACGGCACTTGTATTCGGTCCGCCGCGTCGTTTGCCAACAGGCATCGTA
TACCTTTGATCTGTCTTTCTTCTCCAACGGCTTTAGGTCCTTGCGCGGCA
GCAAGGGCGCCGGATAGCCACTCTCCCAGCCATCCTGGGAGTACAAATTG
CCCTCGGAGTTAAAGTGGCGAAACGAAGACGGAGGCAGAAAGCCTAAAAC
CTGCTTTTGCAGCAAGTGAGACATGCCAATCAGCGGTTTGCTTTTGGCAA
GCATGTCGACTGATAACT

BO06842.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4691-PA 789 CG4691-RA 1..786 804..19 3930 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4691-RA 1158 CG4691-RA 205..990 804..19 3930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14760971..14761756 804..19 3930 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:31:27 has no hits.

BO06842.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:11 Download gff for BO06842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4691-PA 1..789 15..804 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:49 Download gff for BO06842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4691-PA 1..789 15..804 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:40 Download gff for BO06842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4691-RA 205..993 15..804 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:47 Download gff for BO06842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4691-RA 205..993 15..804 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:47 Download gff for BO06842.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14760972..14761759 15..803 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:40 Download gff for BO06842.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14760972..14761759 15..803 99   Minus

BO06842.5prime Sequence

818 bp (817 high quality bases) assembled on 2005-12-03

> BO06842.5prime
GAAGTTATCAGTCGACATGCTTGCCAAAAGCAAACCGCTGATTGGCATGT
CTCACTTGCTGCAAAAGCAGGTTTTAGGCTTTCTGCCTCCGTCTTCGTTT
CGCCACTTTAACTCCGAGGGCAATTTGTACTCCCAGGATGGCTGGGAGAG
TGGCTATCCGGCGCCCTTGCTGCCGCGCAAGGACCTAAAGCCGTTGGAGA
AGAAAGACAGATCAAAGGTATACGATGCCTGTTGGCAAACGACGCGGCGG
ACCGAATACAAGTGCCGTTCGGATCCAGAGTTTCAGATGCACGCCTTTAT
CGATTCGCGCAAAAGTTGTTTAGAAGACCCCTGCGCCACCGAGATGTTGG
CCATCGATCTCACCCACTATAAGCCCTCGGACATGGGCAAACGAAAGTAT
CCGCGCACCTGGTTCGAATGTGTGGTCAAGCGGCGGAAGCGGAAGGCCCA
CTGCGTCCCCGTACCGCCACCGATGCCGCGGCGCAAGCGCAAGTCGAAAA
AGCCCCGCTGCCCCGAGGATTTGTGTGTATTGGGCAAACTGGAGCTTAAC
CTCATCAAACCCTGCGTTAAGGAATCATCGAAATGTCCGCGCTTCAGAAT
GCCCAACTGCTGTGTGGCCGCCCGCGATCCGCCCAAGTGCCGTCGTCCCT
TTAGACGTTGTGGCCAGAGACCCAAGACCAAGTATCCAAGTTTCTCCGAG
TGTCGACGCGATCCCTTCCCGGATCCTCGACCCATCGAGTGCAACTGCCT
GCTCAAGCCGGCCATCTGCGATATGTGGCGCCACTACCGCCGCCGATTTG
GCGCAAGCTTTCTAGACC

BO06842.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4691-PA 789 CG4691-RA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4691-RA 1158 CG4691-RA 205..990 17..802 3930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14760971..14761756 17..802 3930 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:04:54 has no hits.

BO06842.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:12 Download gff for BO06842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4691-PA 1..789 17..806 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:50 Download gff for BO06842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4691-PA 1..789 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:59 Download gff for BO06842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4691-RA 205..993 17..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:51 Download gff for BO06842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4691-RA 205..993 17..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:51 Download gff for BO06842.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14760972..14761759 18..806 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:59 Download gff for BO06842.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14760972..14761759 18..806 99   Plus

BO06842.complete Sequence

820 bp (820 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630557

> BO06842.complete
GAAGTTATCAGTCGACATGCTTGCCAAAAGCAAACCGCTGATTGGCATGT
CTCACTTGCTGCAAAAGCAGGTTTTAGGCTTTCTGCCTCCGTCTTCGTTT
CGCCACTTTAACTCCGAGGGCAATTTGTACTCCCAGGATGGCTGGGAGAG
TGGCTATCCGGCGCCCTTGCTGCCGCGCAAGGACCTAAAGCCGTTGGAGA
AGAAAGACAGATCAAAGGTATACGATGCCTGTTGGCAAACGACGCGGCGG
ACCGAATACAAGTGCCGTTCGGATCCAGAGTTTCAGATGCACGCCTTTAT
CGATTCGCGCAAAAGTTGTTTAGAAGACCCCTGCGCCACCGAGATGTTGG
CCATCGATCTCACCCACTATAAGCCCTCGGACATGGGCAAACGAAAGTAT
CCGCGCACCTGGTTCGAATGTGTGGTCAAGCGGCGGAAGCGGAAGGCCCA
CTGCGTCCCCGTACCGCCACCGATGCCGCGGCGCAAGCGCAAGTCGAAAA
AGCCCCGCTGCCCCGAGGATTTGTGTGTATTGGGCAAACTGGAGCTTAAC
CTCATCAAACCCTGCGTTAAGGAATCATCGAAATGTCCGCGCTTCAGAAT
GCCCAACTGCTGTGTGGCCGCCCGCGATCCGCCCAAGTGCCGTCGTCCCT
TTAGACGTTGTGGCCAGAGACCCAAGACCAAGTATCCAAGTTTCTCCGAG
TGTCGACGCGATCCCTTCCCGGATCCTCGACCCATCGAGTGCAACTGCCT
GCTCAAGCCGGCCATCTGCGATATGTGGCGCCACTACCGCCGCCGATTTG
GCGCAAGCTTTCTAGACCAT

BO06842.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4691-RA 789 CG4691-PA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4691-RA 1158 CG4691-RA 205..990 17..802 3930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14760971..14761756 17..802 3930 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:21:29 has no hits.

BO06842.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:33 Download gff for BO06842.complete
Subject Subject Range Query Range Percent Splice Strand
CG4691-RA 1..789 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:38 Download gff for BO06842.complete
Subject Subject Range Query Range Percent Splice Strand
CG4691-RA 205..993 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:07 Download gff for BO06842.complete
Subject Subject Range Query Range Percent Splice Strand
CG4691-RA 205..990 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:33 Download gff for BO06842.complete
Subject Subject Range Query Range Percent Splice Strand
CG4691-RA 205..993 17..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:35 Download gff for BO06842.complete
Subject Subject Range Query Range Percent Splice Strand
CG4691-RA 205..990 17..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:35 Download gff for BO06842.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14760971..14761756 17..804 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:07 Download gff for BO06842.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14760971..14761756 17..804 99   Plus

BO06842.pep Sequence

Translation from 16 to 820

> BO06842.pep
MLAKSKPLIGMSHLLQKQVLGFLPPSSFRHFNSEGNLYSQDGWESGYPAP
LLPRKDLKPLEKKDRSKVYDACWQTTRRTEYKCRSDPEFQMHAFIDSRKS
CLEDPCATEMLAIDLTHYKPSDMGKRKYPRTWFECVVKRRKRKAHCVPVP
PPMPRRKRKSKKPRCPEDLCVLGKLELNLIKPCVKESSKCPRFRMPNCCV
AARDPPKCRRPFRRCGQRPKTKYPSFSECRRDPFPDPRPIECNCLLKPAI
CDMWRHYRRRFGASFLDH

BO06842.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4691-PA 262 CG4691-PA 1..262 1..262 1478 100 Plus
boly-PA 255 CG30362-PA 33..253 41..260 487 47.3 Plus
CG8701-PA 246 CG8701-PA 64..231 84..259 272 35.7 Plus
CG2127-PB 289 CG2127-PB 130..275 114..260 252 39.5 Plus
CG2127-PA 305 CG2127-PA 146..291 114..260 252 39.5 Plus