Clone Sequence Records
BO06843.3prime Sequence
608 bp (607 high quality bases) assembled on 2005-12-03
> BO06843.3prime
ATGGTCTAGAAAGCTTGCGAGCAAAAGGCATCTGGTCTTCTTCCTCTTTT
TGACTTGCAGCGCGGCCCTAGTTGCCGTCTCGAAAACATCTCGCACACCC
TCCTTGGACTTAGCCGAACACTCCAAATAGGCAAAGGCATTAATCTTCTC
GGCCATGGCGCGACCCTCCTGCGGCTTCACCGGCTCCTGCTTCATTTTTG
CTAGATCCCGAATTGTGTTGGGATCATTTCGCAAATCTTTCTTATTTCCT
ACCAAAATGATTGGAACATTTGGACAAAAGTGTTTGACCTCTGGGGTCCA
TTTTTCAGGAATATTTTCTAGCGAATCGGGTGAATCCACTGAGAAACACA
TCAGTATGACGTCAGTGTCGGGATAGCTCAGCGGTCGTAGTCTGTCGTAG
TCCTCCTGCCCGGCCGTATCCCACAAGGCCAGCTCCACCTGTTTGCCATC
CACCTCGATGTCGGCCACATAATTCTCGAATACGGTGGGCACATAGACCT
CGGGGAACTGATCTTTGCTGAAGACAATCAGAAGGCAAGTTTTACCGCAG
GCACCGTCGCCGACAATTACCAATTTCTTGCGAATCGTCGTCATGTCGAC
TGATAACT
BO06843.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8416-PB | 579 | Rho1-RB | 1..576 | 594..19 | 2880 | 100 | Minus |
CG8416-PC | 579 | Rho1-RC | 1..576 | 594..19 | 2880 | 100 | Minus |
CG8416-PD | 579 | Rho1-RD | 1..576 | 594..19 | 2880 | 100 | Minus |
CG8416-PE | 579 | Rho1-RE | 1..576 | 594..19 | 2880 | 100 | Minus |
CG8416-PF | 579 | Rho1-RF | 1..576 | 594..19 | 2880 | 100 | Minus |
CG8416-PG | 579 | Rho1-RG | 1..576 | 594..19 | 2880 | 100 | Minus |
CG8416-PA | 579 | Rho1-RA | 1..576 | 594..19 | 2880 | 100 | Minus |
CG2248-PA | 579 | Rac1-RA | 164..195 | 425..394 | 160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rho1-RA | 1288 | CG8416-RA | 272..847 | 594..19 | 2880 | 100 | Minus |
Rho1-RG | 1977 | CG8416-RG | 221..796 | 594..19 | 2880 | 100 | Minus |
Rho1-RF | 1971 | CG8416-RF | 215..790 | 594..19 | 2880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16105859..16106048 | 208..19 | 950 | 100 | Minus |
2R | 25286936 | 2R | 16103619..16103776 | 594..437 | 790 | 100 | Minus |
2R | 25286936 | 2R | 16105030..16105184 | 441..287 | 775 | 100 | Minus |
2R | 25286936 | 2R | 16105715..16105798 | 290..207 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:12:58 has no hits.
BO06843.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:13 Download gff for
BO06843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-PG | 1..579 | 15..594 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:51 Download gff for
BO06843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8416-PB | 1..579 | 15..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:16 Download gff for
BO06843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RF | 211..793 | 15..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:48 Download gff for
BO06843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RF | 211..793 | 15..599 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:48 Download gff for
BO06843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16105717..16105797 | 208..288 | 100 | -> | Minus |
2R | 16103615..16103774 | 439..599 | 98 | -> | Minus |
2R | 16105033..16105182 | 289..438 | 100 | -> | Minus |
2R | 16105860..16106051 | 15..207 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:16 Download gff for
BO06843.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11993222..11993302 | 208..288 | 100 | -> | Minus |
arm_2R | 11991120..11991279 | 439..599 | 98 | -> | Minus |
arm_2R | 11992538..11992687 | 289..438 | 100 | -> | Minus |
arm_2R | 11993365..11993556 | 15..207 | 98 | | Minus |
BO06843.5prime Sequence
608 bp (607 high quality bases) assembled on 2005-12-03
> BO06843.5prime
GAAGTTATCAGTCGACATGACGACGATTCGCAAGAAATTGGTAATTGTCG
GCGACGGTGCCTGCGGTAAAACTTGCCTTCTGATTGTCTTCAGCAAAGAT
CAGTTCCCCGAGGTCTATGTGCCCACCGTATTCGAGAATTATGTGGCCGA
CATCGAGGTGGATGGCAAACAGGTGGAGCTGGCCTTGTGGGATACGGCCG
GGCAGGAGGACTACGACAGACTACGACCGCTGAGCTATCCCGACACTGAC
GTCATACTGATGTGTTTCTCAGTGGATTCACCCGATTCGCTAGAAAATAT
TCCTGAAAAATGGACCCCAGAGGTCAAACACTTTTGTCCAAATGTTCCAA
TCATTTTGGTAGGAAATAAGAAAGATTTGCGAAATGATCCCAACACAATT
CGGGATCTAGCAAAAATGAAGCAGGAGCCGGTGAAGCCGCAGGAGGGTCG
CGCCATGGCCGAGAAGATTAATGCCTTTGCCTATTTGGAGTGTTCGGCTA
AGTCCAAGGAGGGTGTGCGAGATGTTTTCGAGACGGCAACTAGGGCCGCG
CTGCAAGTCAAAAAGAGGAAGAAGACCAGATGCCTTTTGCTCGCAAGCTT
TCTAGACC
BO06843.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8416-PB | 579 | Rho1-RB | 1..576 | 17..592 | 2880 | 100 | Plus |
CG8416-PC | 579 | Rho1-RC | 1..576 | 17..592 | 2880 | 100 | Plus |
CG8416-PD | 579 | Rho1-RD | 1..576 | 17..592 | 2880 | 100 | Plus |
CG8416-PE | 579 | Rho1-RE | 1..576 | 17..592 | 2880 | 100 | Plus |
CG8416-PF | 579 | Rho1-RF | 1..576 | 17..592 | 2880 | 100 | Plus |
CG8416-PG | 579 | Rho1-RG | 1..576 | 17..592 | 2880 | 100 | Plus |
CG8416-PA | 579 | Rho1-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
CG2248-PA | 579 | Rac1-RA | 164..195 | 186..217 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rho1-RA | 1288 | CG8416-RA | 272..847 | 17..592 | 2880 | 100 | Plus |
Rho1-RG | 1977 | CG8416-RG | 221..796 | 17..592 | 2880 | 100 | Plus |
Rho1-RF | 1971 | CG8416-RF | 215..790 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16105859..16106048 | 403..592 | 950 | 100 | Plus |
2R | 25286936 | 2R | 16103619..16103776 | 17..174 | 790 | 100 | Plus |
2R | 25286936 | 2R | 16105030..16105184 | 170..324 | 775 | 100 | Plus |
2R | 25286936 | 2R | 16105715..16105798 | 321..404 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:46:37 has no hits.
BO06843.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:14 Download gff for
BO06843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-PG | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:53 Download gff for
BO06843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8416-PB | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:54 Download gff for
BO06843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RF | 211..793 | 12..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:46:44 Download gff for
BO06843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RF | 211..793 | 12..596 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:46:44 Download gff for
BO06843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16103615..16103774 | 12..172 | 98 | -> | Plus |
2R | 16105033..16105182 | 173..322 | 100 | -> | Plus |
2R | 16105717..16105797 | 323..403 | 100 | -> | Plus |
2R | 16105860..16106051 | 404..596 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:54 Download gff for
BO06843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11991120..11991279 | 12..172 | 98 | -> | Plus |
arm_2R | 11992538..11992687 | 173..322 | 100 | -> | Plus |
arm_2R | 11993222..11993302 | 323..403 | 100 | -> | Plus |
arm_2R | 11993365..11993556 | 404..596 | 98 | | Plus |
BO06843.complete Sequence
610 bp (610 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630558
> BO06843.complete
GAAGTTATCAGTCGACATGACGACGATTCGCAAGAAATTGGTAATTGTCG
GCGACGGTGCCTGCGGTAAAACTTGCCTTCTGATTGTCTTCAGCAAAGAT
CAGTTCCCCGAGGTCTATGTGCCCACCGTATTCGAGAATTATGTGGCCGA
CATCGAGGTGGATGGCAAACAGGTGGAGCTGGCCTTGTGGGATACGGCCG
GGCAGGAGGACTACGACAGACTACGACCGCTGAGCTATCCCGACACTGAC
GTCATACTGATGTGTTTCTCAGTGGATTCACCCGATTCGCTAGAAAATAT
TCCTGAAAAATGGACCCCAGAGGTCAAACACTTTTGTCCAAATGTTCCAA
TCATTTTGGTAGGAAATAAGAAAGATTTGCGAAATGATCCCAACACAATT
CGGGATCTAGCAAAAATGAAGCAGGAGCCGGTGAAGCCGCAGGAGGGTCG
CGCCATGGCCGAGAAGATTAATGCCTTTGCCTATTTGGAGTGTTCGGCTA
AGTCCAAGGAGGGTGTGCGAGATGTTTTCGAGACGGCAACTAGGGCCGCG
CTGCAAGTCAAAAAGAGGAAGAAGACCAGATGCCTTTTGCTCGCAAGCTT
TCTAGACCAT
BO06843.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rho1-RA | 579 | CG8416-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Rho1-RG | 579 | CG8416-PG | 1..576 | 17..592 | 2880 | 100 | Plus |
Rho1-RF | 579 | CG8416-PF | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rho1-RA | 1288 | CG8416-RA | 272..847 | 17..592 | 2880 | 100 | Plus |
Rho1-RG | 1977 | CG8416-RG | 221..796 | 17..592 | 2880 | 100 | Plus |
Rho1-RF | 1971 | CG8416-RF | 215..790 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16105859..16106048 | 403..592 | 950 | 100 | Plus |
2R | 25286936 | 2R | 16103619..16103776 | 17..174 | 790 | 100 | Plus |
2R | 25286936 | 2R | 16105030..16105184 | 170..324 | 775 | 100 | Plus |
2R | 25286936 | 2R | 16105715..16105798 | 321..404 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:10:01 has no hits.
BO06843.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:34 Download gff for
BO06843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RD | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:40 Download gff for
BO06843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RD | 223..805 | 12..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:24 Download gff for
BO06843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RF | 215..790 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:34 Download gff for
BO06843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RD | 223..805 | 12..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:54 Download gff for
BO06843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RF | 215..790 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:54 Download gff for
BO06843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16103619..16103774 | 17..172 | 100 | -> | Plus |
2R | 16105033..16105182 | 173..322 | 100 | -> | Plus |
2R | 16105717..16105797 | 323..403 | 100 | -> | Plus |
2R | 16105860..16106048 | 404..594 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:24 Download gff for
BO06843.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11991124..11991279 | 17..172 | 100 | -> | Plus |
arm_2R | 11992538..11992687 | 173..322 | 100 | -> | Plus |
arm_2R | 11993222..11993302 | 323..403 | 100 | -> | Plus |
arm_2R | 11993365..11993553 | 404..594 | 98 | | Plus |
BO06843.pep Sequence
Translation from 16 to 610
> BO06843.pep
MTTIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG
KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDPNTIRDLAKMKQEPVKPQEGRAMAEK
INAFAYLECSAKSKEGVRDVFETATRAALQVKKRKKTRCLLLASFLDH
BO06843.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rho1-PA | 192 | CG8416-PA | 1..192 | 1..192 | 1005 | 100 | Plus |
Rho1-PG | 192 | CG8416-PG | 1..192 | 1..192 | 1005 | 100 | Plus |
Rho1-PF | 192 | CG8416-PF | 1..192 | 1..192 | 1005 | 100 | Plus |
Rho1-PD | 192 | CG8416-PD | 1..192 | 1..192 | 1005 | 100 | Plus |
Rho1-PC | 192 | CG8416-PC | 1..192 | 1..192 | 1005 | 100 | Plus |