Clone BO06843 Report

Search the DGRC for BO06843

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptRho1-RB
Protein status:BO06843.pep: validated full length
Sequenced Size:610

Clone Sequence Records

BO06843.3prime Sequence

608 bp (607 high quality bases) assembled on 2005-12-03

> BO06843.3prime
ATGGTCTAGAAAGCTTGCGAGCAAAAGGCATCTGGTCTTCTTCCTCTTTT
TGACTTGCAGCGCGGCCCTAGTTGCCGTCTCGAAAACATCTCGCACACCC
TCCTTGGACTTAGCCGAACACTCCAAATAGGCAAAGGCATTAATCTTCTC
GGCCATGGCGCGACCCTCCTGCGGCTTCACCGGCTCCTGCTTCATTTTTG
CTAGATCCCGAATTGTGTTGGGATCATTTCGCAAATCTTTCTTATTTCCT
ACCAAAATGATTGGAACATTTGGACAAAAGTGTTTGACCTCTGGGGTCCA
TTTTTCAGGAATATTTTCTAGCGAATCGGGTGAATCCACTGAGAAACACA
TCAGTATGACGTCAGTGTCGGGATAGCTCAGCGGTCGTAGTCTGTCGTAG
TCCTCCTGCCCGGCCGTATCCCACAAGGCCAGCTCCACCTGTTTGCCATC
CACCTCGATGTCGGCCACATAATTCTCGAATACGGTGGGCACATAGACCT
CGGGGAACTGATCTTTGCTGAAGACAATCAGAAGGCAAGTTTTACCGCAG
GCACCGTCGCCGACAATTACCAATTTCTTGCGAATCGTCGTCATGTCGAC
TGATAACT

BO06843.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8416-PB 579 Rho1-RB 1..576 594..19 2880 100 Minus
CG8416-PC 579 Rho1-RC 1..576 594..19 2880 100 Minus
CG8416-PD 579 Rho1-RD 1..576 594..19 2880 100 Minus
CG8416-PE 579 Rho1-RE 1..576 594..19 2880 100 Minus
CG8416-PF 579 Rho1-RF 1..576 594..19 2880 100 Minus
CG8416-PG 579 Rho1-RG 1..576 594..19 2880 100 Minus
CG8416-PA 579 Rho1-RA 1..576 594..19 2880 100 Minus
CG2248-PA 579 Rac1-RA 164..195 425..394 160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Rho1-RA 1288 CG8416-RA 272..847 594..19 2880 100 Minus
Rho1-RG 1977 CG8416-RG 221..796 594..19 2880 100 Minus
Rho1-RF 1971 CG8416-RF 215..790 594..19 2880 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16105859..16106048 208..19 950 100 Minus
2R 25286936 2R 16103619..16103776 594..437 790 100 Minus
2R 25286936 2R 16105030..16105184 441..287 775 100 Minus
2R 25286936 2R 16105715..16105798 290..207 420 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:12:58 has no hits.

BO06843.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:13 Download gff for BO06843.3prime
Subject Subject Range Query Range Percent Splice Strand
Rho1-PG 1..579 15..594 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:51 Download gff for BO06843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8416-PB 1..579 15..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:16 Download gff for BO06843.3prime
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 211..793 15..599 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:48 Download gff for BO06843.3prime
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 211..793 15..599 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:48 Download gff for BO06843.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16105717..16105797 208..288 100 -> Minus
2R 16103615..16103774 439..599 98 -> Minus
2R 16105033..16105182 289..438 100 -> Minus
2R 16105860..16106051 15..207 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:16 Download gff for BO06843.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11993222..11993302 208..288 100 -> Minus
arm_2R 11991120..11991279 439..599 98 -> Minus
arm_2R 11992538..11992687 289..438 100 -> Minus
arm_2R 11993365..11993556 15..207 98   Minus

BO06843.5prime Sequence

608 bp (607 high quality bases) assembled on 2005-12-03

> BO06843.5prime
GAAGTTATCAGTCGACATGACGACGATTCGCAAGAAATTGGTAATTGTCG
GCGACGGTGCCTGCGGTAAAACTTGCCTTCTGATTGTCTTCAGCAAAGAT
CAGTTCCCCGAGGTCTATGTGCCCACCGTATTCGAGAATTATGTGGCCGA
CATCGAGGTGGATGGCAAACAGGTGGAGCTGGCCTTGTGGGATACGGCCG
GGCAGGAGGACTACGACAGACTACGACCGCTGAGCTATCCCGACACTGAC
GTCATACTGATGTGTTTCTCAGTGGATTCACCCGATTCGCTAGAAAATAT
TCCTGAAAAATGGACCCCAGAGGTCAAACACTTTTGTCCAAATGTTCCAA
TCATTTTGGTAGGAAATAAGAAAGATTTGCGAAATGATCCCAACACAATT
CGGGATCTAGCAAAAATGAAGCAGGAGCCGGTGAAGCCGCAGGAGGGTCG
CGCCATGGCCGAGAAGATTAATGCCTTTGCCTATTTGGAGTGTTCGGCTA
AGTCCAAGGAGGGTGTGCGAGATGTTTTCGAGACGGCAACTAGGGCCGCG
CTGCAAGTCAAAAAGAGGAAGAAGACCAGATGCCTTTTGCTCGCAAGCTT
TCTAGACC

BO06843.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8416-PB 579 Rho1-RB 1..576 17..592 2880 100 Plus
CG8416-PC 579 Rho1-RC 1..576 17..592 2880 100 Plus
CG8416-PD 579 Rho1-RD 1..576 17..592 2880 100 Plus
CG8416-PE 579 Rho1-RE 1..576 17..592 2880 100 Plus
CG8416-PF 579 Rho1-RF 1..576 17..592 2880 100 Plus
CG8416-PG 579 Rho1-RG 1..576 17..592 2880 100 Plus
CG8416-PA 579 Rho1-RA 1..576 17..592 2880 100 Plus
CG2248-PA 579 Rac1-RA 164..195 186..217 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rho1-RA 1288 CG8416-RA 272..847 17..592 2880 100 Plus
Rho1-RG 1977 CG8416-RG 221..796 17..592 2880 100 Plus
Rho1-RF 1971 CG8416-RF 215..790 17..592 2880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16105859..16106048 403..592 950 100 Plus
2R 25286936 2R 16103619..16103776 17..174 790 100 Plus
2R 25286936 2R 16105030..16105184 170..324 775 100 Plus
2R 25286936 2R 16105715..16105798 321..404 420 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:46:37 has no hits.

BO06843.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:14 Download gff for BO06843.5prime
Subject Subject Range Query Range Percent Splice Strand
Rho1-PG 1..579 17..596 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:53 Download gff for BO06843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8416-PB 1..579 17..596 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:40:54 Download gff for BO06843.5prime
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 211..793 12..596 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:46:44 Download gff for BO06843.5prime
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 211..793 12..596 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:46:44 Download gff for BO06843.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16103615..16103774 12..172 98 -> Plus
2R 16105033..16105182 173..322 100 -> Plus
2R 16105717..16105797 323..403 100 -> Plus
2R 16105860..16106051 404..596 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:40:54 Download gff for BO06843.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11991120..11991279 12..172 98 -> Plus
arm_2R 11992538..11992687 173..322 100 -> Plus
arm_2R 11993222..11993302 323..403 100 -> Plus
arm_2R 11993365..11993556 404..596 98   Plus

BO06843.complete Sequence

610 bp (610 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630558

> BO06843.complete
GAAGTTATCAGTCGACATGACGACGATTCGCAAGAAATTGGTAATTGTCG
GCGACGGTGCCTGCGGTAAAACTTGCCTTCTGATTGTCTTCAGCAAAGAT
CAGTTCCCCGAGGTCTATGTGCCCACCGTATTCGAGAATTATGTGGCCGA
CATCGAGGTGGATGGCAAACAGGTGGAGCTGGCCTTGTGGGATACGGCCG
GGCAGGAGGACTACGACAGACTACGACCGCTGAGCTATCCCGACACTGAC
GTCATACTGATGTGTTTCTCAGTGGATTCACCCGATTCGCTAGAAAATAT
TCCTGAAAAATGGACCCCAGAGGTCAAACACTTTTGTCCAAATGTTCCAA
TCATTTTGGTAGGAAATAAGAAAGATTTGCGAAATGATCCCAACACAATT
CGGGATCTAGCAAAAATGAAGCAGGAGCCGGTGAAGCCGCAGGAGGGTCG
CGCCATGGCCGAGAAGATTAATGCCTTTGCCTATTTGGAGTGTTCGGCTA
AGTCCAAGGAGGGTGTGCGAGATGTTTTCGAGACGGCAACTAGGGCCGCG
CTGCAAGTCAAAAAGAGGAAGAAGACCAGATGCCTTTTGCTCGCAAGCTT
TCTAGACCAT

BO06843.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Rho1-RA 579 CG8416-PA 1..576 17..592 2880 100 Plus
Rho1-RG 579 CG8416-PG 1..576 17..592 2880 100 Plus
Rho1-RF 579 CG8416-PF 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
Rho1-RA 1288 CG8416-RA 272..847 17..592 2880 100 Plus
Rho1-RG 1977 CG8416-RG 221..796 17..592 2880 100 Plus
Rho1-RF 1971 CG8416-RF 215..790 17..592 2880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16105859..16106048 403..592 950 100 Plus
2R 25286936 2R 16103619..16103776 17..174 790 100 Plus
2R 25286936 2R 16105030..16105184 170..324 775 100 Plus
2R 25286936 2R 16105715..16105798 321..404 420 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:10:01 has no hits.

BO06843.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:34 Download gff for BO06843.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RD 1..579 17..596 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:40 Download gff for BO06843.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RD 223..805 12..596 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:24 Download gff for BO06843.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 215..790 17..594 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:34 Download gff for BO06843.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RD 223..805 12..596 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:54 Download gff for BO06843.complete
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 215..790 17..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:54 Download gff for BO06843.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16103619..16103774 17..172 100 -> Plus
2R 16105033..16105182 173..322 100 -> Plus
2R 16105717..16105797 323..403 100 -> Plus
2R 16105860..16106048 404..594 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:24 Download gff for BO06843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11991124..11991279 17..172 100 -> Plus
arm_2R 11992538..11992687 173..322 100 -> Plus
arm_2R 11993222..11993302 323..403 100 -> Plus
arm_2R 11993365..11993553 404..594 98   Plus

BO06843.pep Sequence

Translation from 16 to 610

> BO06843.pep
MTTIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG
KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWT
PEVKHFCPNVPIILVGNKKDLRNDPNTIRDLAKMKQEPVKPQEGRAMAEK
INAFAYLECSAKSKEGVRDVFETATRAALQVKKRKKTRCLLLASFLDH

BO06843.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
Rho1-PA 192 CG8416-PA 1..192 1..192 1005 100 Plus
Rho1-PG 192 CG8416-PG 1..192 1..192 1005 100 Plus
Rho1-PF 192 CG8416-PF 1..192 1..192 1005 100 Plus
Rho1-PD 192 CG8416-PD 1..192 1..192 1005 100 Plus
Rho1-PC 192 CG8416-PC 1..192 1..192 1005 100 Plus