Clone Sequence Records
BO06844.3prime Sequence
722 bp (721 high quality bases) assembled on 2005-12-03
> BO06844.3prime
ATGGTCTAGAAAGCTTGCCTTCTGACCCAGATGCAGCTTGCCCAACAGGG
CGTTGGCCTGCTGTCCGGCAGACTCCTGGGCCTGTCCGGCCGCATCCTGG
ACGGTCTTCTCGACGGACTGGCGCTTCTGGTCGACATACTGGTTGGCCTC
CTGCAGCTTCTGGTCCACCGTTTGACTGGTCTGCTTCAGTGCCCCATCGA
TGGCGCCCTCCGCCTGCTTCAGCTTCTGGTCCGCCACGTTCTCGGCGGCC
TTCACGCTCTTGTTGATGGCGTCGTTGGCCGCCTTCTTGGTCTGGTCCAC
CGCATTGGCGGCCGCTCGCTGGGAGGCCTCCGCCACATTGGCCGCCACCT
GCTTGGAGTTCTGGGCCACGGCCGCCGCCTGGGCCACCGTGTTGTCCACC
GCCTGCTTGCCTTGGTTGACGGCTCCGGCGGCACGGTTCACACCCTGGTC
AATCGCCTGTCCAGCCTTCTGAGCCTCCGCGGTGGCCAGAGCAGCGGCTT
CCTTGGCCGTGCTGGCGGCCAACTGCTCGGCCTCGCCCTTGGTCTGCTGT
ACGGACTGGCCCACCTTCTTGGCCTGCTCCTCGGCTAGCTTCTGGGCCTC
GGCAGCCTTCTCGTTGGCCAGCTTCTCGGCCTCATCCTTCTTCTTGCTGA
AGAGGTTGGCGGTCTTGTCACCGAAGTTCTTCAAGGAAGCTGAAATCGAG
CTGAACATGTCGACTGATAACT
BO06844.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1648-PA | 693 | CG1648-RA | 1..690 | 708..19 | 3450 | 100 | Minus |
CG1648-PB | 699 | CG1648-RB | 26..696 | 689..19 | 3355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1648-RC | 1392 | CG1648-RC | 196..885 | 708..19 | 3450 | 100 | Minus |
CG1648-RA | 1047 | CG1648-RA | 196..885 | 708..19 | 3450 | 100 | Minus |
CG1648-RB | 884 | CG1648-RB | 52..722 | 689..19 | 3355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9811481..9811969 | 19..507 | 2445 | 100 | Plus |
2R | 25286936 | 2R | 9812482..9812667 | 507..692 | 930 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 07:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2933..2997 | 246..182 | 109 | 63.1 | Minus |
BO06844.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:15 Download gff for
BO06844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-PA | 1..693 | 18..708 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:54 Download gff for
BO06844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-PA | 1..693 | 18..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:01 Download gff for
BO06844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 191..885 | 19..713 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:17 Download gff for
BO06844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 191..885 | 19..713 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:17 Download gff for
BO06844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9811481..9811968 | 19..506 | 100 | <- | Plus |
2R | 9812482..9812664 | 507..689 | 100 | <- | Plus |
2R | 9819840..9819863 | 690..713 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:01 Download gff for
BO06844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5698986..5699473 | 19..506 | 100 | <- | Plus |
arm_2R | 5699987..5700169 | 507..689 | 100 | <- | Plus |
arm_2R | 5707345..5707368 | 690..713 | 91 | | Plus |
BO06844.5prime Sequence
722 bp (721 high quality bases) assembled on 2005-12-03
> BO06844.5prime
GAAGTTATCAGTCGACATGTTCAGCTCGATTTCAGCTTCCTTGAAGAACT
TCGGTGACAAGACCGCCAACCTCTTCAGCAAGAAGAAGGATGAGGCCGAG
AAGCTGGCCAACGAGAAGGCTGCCGAGGCCCAGAAGCTAGCCGAGGAGCA
GGCCAAGAAGGTGGGCCAGTCCGTACAGCAGACCAAGGGCGAGGCCGAGC
AGTTGGCCGCCAGCACGGCCAAGGAAGCCGCTGCTCTGGCCACCGCGGAG
GCTCAGAAGGCTGGACAGGCGATTGACCAGGGTGTGAACCGTGCCGCCGG
AGCCGTCAACCAAGGCAAGCAGGCGGTGGACAACACGGTGGCCCAGGCGG
CGGCCGTGGCCCAGAACTCCAAGCAGGTGGCGGCCAATGTGGCGGAGGCC
TCCCAGCGAGCGGCCGCCAATGCGGTGGACCAGACCAAGAAGGCGGCCAA
CGACGCCATCAACAAGAGCGTGAAGGCCGCCGAGAACGTGGCGGACCAGA
AGCTGAAGCAGGCGGAGGGCGCCATCGATGGGGCACTGAAGCAGACCAGT
CAAACGGTGGACCAGAAGCTGCAGGAGGCCAACCAGTATGTCGACCAGAA
GCGCCAGTCCGTCGAGAAGACCGTCCAGGATGCGGCCGGACAGGCCCAGG
AGTCTGCCGGACAGCAGGCCAACGCCCTGTTGGGCAAGCTGCATCTGGGT
CAGAAGGCAAGCTTTCTAGACC
BO06844.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1648-PA | 693 | CG1648-RA | 1..690 | 17..706 | 3450 | 100 | Plus |
CG1648-PB | 699 | CG1648-RB | 26..696 | 36..706 | 3355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1648-RC | 1392 | CG1648-RC | 196..885 | 17..706 | 3450 | 100 | Plus |
CG1648-RA | 1047 | CG1648-RA | 196..885 | 17..706 | 3450 | 100 | Plus |
CG1648-RB | 884 | CG1648-RB | 52..722 | 36..706 | 3355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9811481..9811969 | 706..218 | 2445 | 100 | Minus |
2R | 25286936 | 2R | 9812482..9812667 | 218..33 | 930 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 16:10:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2933..2997 | 479..543 | 109 | 63.1 | Plus |
BO06844.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:16 Download gff for
BO06844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-PA | 1..693 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:55 Download gff for
BO06844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-PA | 1..693 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:26 Download gff for
BO06844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 191..885 | 12..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:39:17 Download gff for
BO06844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 191..885 | 12..706 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:39:17 Download gff for
BO06844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9812482..9812664 | 36..218 | 100 | <- | Minus |
2R | 9819840..9819863 | 12..35 | 91 | | Minus |
2R | 9811481..9811968 | 219..706 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:26 Download gff for
BO06844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5698986..5699473 | 219..706 | 100 | <- | Minus |
arm_2R | 5699987..5700169 | 36..218 | 100 | <- | Minus |
arm_2R | 5707345..5707368 | 12..35 | 91 | | Minus |
BO06844.complete Sequence
724 bp (724 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630559
> BO06844.complete
GAAGTTATCAGTCGACATGTTCAGCTCGATTTCAGCTTCCTTGAAGAACT
TCGGTGACAAGACCGCCAACCTCTTCAGCAAGAAGAAGGATGAGGCCGAG
AAGCTGGCCAACGAGAAGGCTGCCGAGGCCCAGAAGCTAGCCGAGGAGCA
GGCCAAGAAGGTGGGCCAGTCCGTACAGCAGACCAAGGGCGAGGCCGAGC
AGTTGGCCGCCAGCACGGCCAAGGAAGCCGCTGCTCTGGCCACCGCGGAG
GCTCAGAAGGCTGGACAGGCGATTGACCAGGGTGTGAACCGTGCCGCCGG
AGCCGTCAACCAAGGCAAGCAGGCGGTGGACAACACGGTGGCCCAGGCGG
CGGCCGTGGCCCAGAACTCCAAGCAGGTGGCGGCCAATGTGGCGGAGGCC
TCCCAGCGAGCGGCCGCCAATGCGGTGGACCAGACCAAGAAGGCGGCCAA
CGACGCCATCAACAAGAGCGTGAAGGCCGCCGAGAACGTGGCGGACCAGA
AGCTGAAGCAGGCGGAGGGCGCCATCGATGGGGCACTGAAGCAGACCAGT
CAAACGGTGGACCAGAAGCTGCAGGAGGCCAACCAGTATGTCGACCAGAA
GCGCCAGTCCGTCGAGAAGACCGTCCAGGATGCGGCCGGACAGGCCCAGG
AGTCTGCCGGACAGCAGGCCAACGCCCTGTTGGGCAAGCTGCATCTGGGT
CAGAAGGCAAGCTTTCTAGACCAT
BO06844.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1648-RC | 693 | CG1648-PC | 1..690 | 17..706 | 3450 | 100 | Plus |
CG1648-RA | 693 | CG1648-PA | 1..690 | 17..706 | 3450 | 100 | Plus |
CG1648-RB | 699 | CG1648-PB | 26..696 | 36..706 | 3355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1648-RC | 1392 | CG1648-RC | 196..885 | 17..706 | 3450 | 100 | Plus |
CG1648-RA | 1047 | CG1648-RA | 196..885 | 17..706 | 3450 | 100 | Plus |
CG1648-RB | 884 | CG1648-RB | 52..722 | 36..706 | 3355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9811481..9811969 | 706..218 | 2445 | 100 | Minus |
2R | 25286936 | 2R | 9812482..9812667 | 218..33 | 930 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:43:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2933..2997 | 479..543 | 109 | 63.1 | Plus |
BO06844.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:52 Download gff for
BO06844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 1..693 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:13 Download gff for
BO06844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 189..883 | 12..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:49 Download gff for
BO06844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 201..885 | 22..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:52 Download gff for
BO06844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 189..883 | 12..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:42 Download gff for
BO06844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1648-RA | 201..885 | 22..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:42 Download gff for
BO06844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9811479..9811968 | 219..708 | 99 | <- | Minus |
2R | 9812482..9812675 | 26..218 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:49 Download gff for
BO06844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5698984..5699473 | 219..708 | 99 | <- | Minus |
arm_2R | 5699987..5700180 | 26..218 | 97 | | Minus |
BO06844.pep Sequence
Translation from 16 to 724
> BO06844.pep
MFSSISASLKNFGDKTANLFSKKKDEAEKLANEKAAEAQKLAEEQAKKVG
QSVQQTKGEAEQLAASTAKEAAALATAEAQKAGQAIDQGVNRAAGAVNQG
KQAVDNTVAQAAAVAQNSKQVAANVAEASQRAAANAVDQTKKAANDAINK
SVKAAENVADQKLKQAEGAIDGALKQTSQTVDQKLQEANQYVDQKRQSVE
KTVQDAAGQAQESAGQQANALLGKLHLGQKASFLDH
BO06844.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1648-PC | 230 | CG1648-PC | 1..230 | 1..230 | 1096 | 100 | Plus |
CG1648-PA | 230 | CG1648-PA | 1..230 | 1..230 | 1096 | 100 | Plus |
CG1648-PB | 232 | CG1648-PB | 10..232 | 8..230 | 1065 | 100 | Plus |
CG45076-PH | 619 | CG45076-PH | 331..545 | 23..218 | 154 | 26 | Plus |
CG45076-PA | 619 | CG45076-PA | 331..545 | 23..218 | 154 | 26 | Plus |
CG45076-PH | 619 | CG45076-PH | 356..562 | 19..221 | 151 | 28.8 | Plus |