Clone BO06845 Report

Search the DGRC for BO06845

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG5565-RA
Protein status:BO06845.pep: validated full length
Sequenced Size:754

Clone Sequence Records

BO06845.5prime Sequence

752 bp (751 high quality bases) assembled on 2005-12-03

> BO06845.5prime
GAAGTTATCAGTCGACATGCCCACCAAGAAGTGTTACTGCCCCGTCACTC
ATGTCATCTTTGACTGCGATGGAACCTTGATAGATAGCGAAGGCATCTAC
CTCAAAACGGTTCAAGACTTGTTGGCTAAATATGGCAAAACGTACACCAA
AGTCGATCAGACGCAGCATATGGGAATGCCGGTCGGTACATTTTCCCAAC
ACATCGTCAAGGATCTAAAACTTCCGTTGTCACCTGCGGAATTTCAAAAG
GAATTCGAGGCAGCTGTTGATAAGAGCATGGGAAGTGTGGCTCTGCTGCC
AGGGGTCAGGGATCTGATTCTCCACTTGCACGAATACCGCATACCCTTCT
GCATAGCCACAAGTTCGTTTAGGAAACTGTTCAAAGTGAAGGCCGAGTCC
TTCAAGGATATATTCCTGGCCTTTCACCACGTTGTCTGTGGCGATGATCC
GGCACTTGGACCGGGAAGAGGAAAGCCCTACCCAGATATATATCTCCTGG
CCGCCTCGCGATTCAATCCGCCCGCAGATCCCAAAAAGTGTCTTATATTC
GAGGATGCTCCAGTGGGCCTCATAGGCGGAAAGGCAGCGGGATCCCAAGT
CATCTTTATTCCAACTGATAACGTTTCCAAGCAGCAGAAAAAGGGCGCCA
CCATGGTTCTAAAATCGATGGCGGACTTTAAGCCTGAGCTCTTTGGTCTA
CCACCCTTTGACACCTGCTCCAAATTCGAGTTTGGCGCAAGCTTTCTAGA
CC

BO06845.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5565-PA 723 CG5565-RA 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5565-RA 942 CG5565-RA 157..876 17..736 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1354977..1355631 736..82 3275 100 Minus
2L 23513712 2L 1355702..1355768 83..17 335 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:32:10 has no hits.

BO06845.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:18 Download gff for BO06845.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-PA 1..723 17..740 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:58 Download gff for BO06845.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-PA 1..723 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:42 Download gff for BO06845.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 148..879 7..740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:24 Download gff for BO06845.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 148..879 7..740 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:24 Download gff for BO06845.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1354974..1355629 84..740 99 <- Minus
2L 1355702..1355777 7..83 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:42 Download gff for BO06845.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1354974..1355629 84..740 99 <- Minus
arm_2L 1355702..1355777 7..83 94   Minus

BO06845.3prime Sequence

752 bp (751 high quality bases) assembled on 2005-12-03

> BO06845.3prime
ATGGTCTAGAAAGCTTGCGCCAAACTCGAATTTGGAGCAGGTGTCAAAGG
GTGGTAGACCAAAGAGCTCAGGCTTAAAGTCCGCCATCGATTTTAGAACC
ATGGTGGCGCCCTTTTTCTGCTGCTTGGAAACGTTATCAGTTGGAATAAA
GATGACTTGGGATCCCGCTGCCTTTCCGCCTATGAGGCCCACTGGAGCAT
CCTCGAATATAAGACACTTTTTGGGATCTGCGGGCGGATTGAATCGCGAG
GCGGCCAGGAGATATATATCTGGGTAGGGCTTTCCTCTTCCCGGTCCAAG
TGCCGGATCATCGCCACAGACAACGTGGTGAAAGGCCAGGAATATATCCT
TGAAGGACTCGGCCTTCACTTTGAACAGTTTCCTAAACGAACTTGTGGCT
ATGCAGAAGGGTATGCGGTATTCGTGCAAGTGGAGAATCAGATCCCTGAC
CCCTGGCAGCAGAGCCACACTTCCCATGCTCTTATCAACAGCTGCCTCGA
ATTCCTTTTGAAATTCCGCAGGTGACAACGGAAGTTTTAGATCCTTGACG
ATGTGTTGGGAAAATGTACCGACCGGCATTCCCATATGCTGCGTCTGATC
GACTTTGGTGTACGTTTTGCCATATTTAGCCAACAAGTCTTGAACCGTTT
TGAGGTAGATGCCTTCGCTATCTATCAAGGTTCCATCGCAGTCAAAGATG
ACATGAGTGACGGGGCAGTAACACTTCTTGGTGGGCATGTCGACTGATAA
CT

BO06845.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5565-PA 723 CG5565-RA 1..720 738..19 3600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5565-RA 942 CG5565-RA 157..876 738..19 3600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1354977..1355631 19..673 3275 100 Plus
2L 23513712 2L 1355702..1355768 672..738 335 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:24:06 has no hits.

BO06845.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:17 Download gff for BO06845.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-PA 1..723 15..738 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:57 Download gff for BO06845.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-PA 1..723 15..738 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:54:11 Download gff for BO06845.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 148..879 15..748 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:42:36 Download gff for BO06845.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 148..879 15..748 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:42:36 Download gff for BO06845.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1354974..1355629 15..671 99 <- Plus
2L 1355702..1355777 672..748 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:54:11 Download gff for BO06845.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1354974..1355629 15..671 99 <- Plus
arm_2L 1355702..1355777 672..748 94   Plus

BO06845.complete Sequence

754 bp (754 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630560

> BO06845.complete
GAAGTTATCAGTCGACATGCCCACCAAGAAGTGTTACTGCCCCGTCACTC
ATGTCATCTTTGACTGCGATGGAACCTTGATAGATAGCGAAGGCATCTAC
CTCAAAACGGTTCAAGACTTGTTGGCTAAATATGGCAAAACGTACACCAA
AGTCGATCAGACGCAGCATATGGGAATGCCGGTCGGTACATTTTCCCAAC
ACATCGTCAAGGATCTAAAACTTCCGTTGTCACCTGCGGAATTTCAAAAG
GAATTCGAGGCAGCTGTTGATAAGAGCATGGGAAGTGTGGCTCTGCTGCC
AGGGGTCAGGGATCTGATTCTCCACTTGCACGAATACCGCATACCCTTCT
GCATAGCCACAAGTTCGTTTAGGAAACTGTTCAAAGTGAAGGCCGAGTCC
TTCAAGGATATATTCCTGGCCTTTCACCACGTTGTCTGTGGCGATGATCC
GGCACTTGGACCGGGAAGAGGAAAGCCCTACCCAGATATATATCTCCTGG
CCGCCTCGCGATTCAATCCGCCCGCAGATCCCAAAAAGTGTCTTATATTC
GAGGATGCTCCAGTGGGCCTCATAGGCGGAAAGGCAGCGGGATCCCAAGT
CATCTTTATTCCAACTGATAACGTTTCCAAGCAGCAGAAAAAGGGCGCCA
CCATGGTTCTAAAATCGATGGCGGACTTTAAGCCTGAGCTCTTTGGTCTA
CCACCCTTTGACACCTGCTCCAAATTCGAGTTTGGCGCAAGCTTTCTAGA
CCAT

BO06845.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5565-RA 723 CG5565-PA 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5565-RA 942 CG5565-RA 157..876 17..736 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1354977..1355631 736..82 3275 100 Minus
2L 23513712 2L 1355702..1355768 83..17 335 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:42:14 has no hits.

BO06845.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:48 Download gff for BO06845.complete
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 1..723 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:39 Download gff for BO06845.complete
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 148..879 7..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:51 Download gff for BO06845.complete
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 157..876 17..738 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:49 Download gff for BO06845.complete
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 148..879 7..740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:08 Download gff for BO06845.complete
Subject Subject Range Query Range Percent Splice Strand
CG5565-RA 157..876 17..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:08 Download gff for BO06845.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1354975..1355629 84..738 99 <- Minus
2L 1355702..1355768 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:51 Download gff for BO06845.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1354975..1355629 84..738 99 <- Minus
arm_2L 1355702..1355768 17..83 100   Minus

BO06845.pep Sequence

Translation from 16 to 754

> BO06845.pep
MPTKKCYCPVTHVIFDCDGTLIDSEGIYLKTVQDLLAKYGKTYTKVDQTQ
HMGMPVGTFSQHIVKDLKLPLSPAEFQKEFEAAVDKSMGSVALLPGVRDL
ILHLHEYRIPFCIATSSFRKLFKVKAESFKDIFLAFHHVVCGDDPALGPG
RGKPYPDIYLLAASRFNPPADPKKCLIFEDAPVGLIGGKAAGSQVIFIPT
DNVSKQQKKGATMVLKSMADFKPELFGLPPFDTCSKFEFGASFLDH

BO06845.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5565-PA 240 CG5565-PA 1..240 1..240 1275 100 Plus
Gs1l-PA 231 CG15441-PA 9..229 10..231 461 40.5 Plus
Gs1l-PB 231 CG15441-PB 9..229 10..231 436 37.8 Plus
CG31924-PB 236 CG31924-PB 8..235 3..230 424 41.3 Plus
CG5561-PA 305 CG5561-PA 21..245 5..231 253 28.5 Plus