Clone Sequence Records
BO06845.5prime Sequence
752 bp (751 high quality bases) assembled on 2005-12-03
> BO06845.5prime
GAAGTTATCAGTCGACATGCCCACCAAGAAGTGTTACTGCCCCGTCACTC
ATGTCATCTTTGACTGCGATGGAACCTTGATAGATAGCGAAGGCATCTAC
CTCAAAACGGTTCAAGACTTGTTGGCTAAATATGGCAAAACGTACACCAA
AGTCGATCAGACGCAGCATATGGGAATGCCGGTCGGTACATTTTCCCAAC
ACATCGTCAAGGATCTAAAACTTCCGTTGTCACCTGCGGAATTTCAAAAG
GAATTCGAGGCAGCTGTTGATAAGAGCATGGGAAGTGTGGCTCTGCTGCC
AGGGGTCAGGGATCTGATTCTCCACTTGCACGAATACCGCATACCCTTCT
GCATAGCCACAAGTTCGTTTAGGAAACTGTTCAAAGTGAAGGCCGAGTCC
TTCAAGGATATATTCCTGGCCTTTCACCACGTTGTCTGTGGCGATGATCC
GGCACTTGGACCGGGAAGAGGAAAGCCCTACCCAGATATATATCTCCTGG
CCGCCTCGCGATTCAATCCGCCCGCAGATCCCAAAAAGTGTCTTATATTC
GAGGATGCTCCAGTGGGCCTCATAGGCGGAAAGGCAGCGGGATCCCAAGT
CATCTTTATTCCAACTGATAACGTTTCCAAGCAGCAGAAAAAGGGCGCCA
CCATGGTTCTAAAATCGATGGCGGACTTTAAGCCTGAGCTCTTTGGTCTA
CCACCCTTTGACACCTGCTCCAAATTCGAGTTTGGCGCAAGCTTTCTAGA
CC
BO06845.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5565-PA | 723 | CG5565-RA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5565-RA | 942 | CG5565-RA | 157..876 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1354977..1355631 | 736..82 | 3275 | 100 | Minus |
2L | 23513712 | 2L | 1355702..1355768 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:32:10 has no hits.
BO06845.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:18 Download gff for
BO06845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-PA | 1..723 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:58 Download gff for
BO06845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-PA | 1..723 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:42 Download gff for
BO06845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 148..879 | 7..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:24 Download gff for
BO06845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 148..879 | 7..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:24 Download gff for
BO06845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1354974..1355629 | 84..740 | 99 | <- | Minus |
2L | 1355702..1355777 | 7..83 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:42 Download gff for
BO06845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1354974..1355629 | 84..740 | 99 | <- | Minus |
arm_2L | 1355702..1355777 | 7..83 | 94 | | Minus |
BO06845.3prime Sequence
752 bp (751 high quality bases) assembled on 2005-12-03
> BO06845.3prime
ATGGTCTAGAAAGCTTGCGCCAAACTCGAATTTGGAGCAGGTGTCAAAGG
GTGGTAGACCAAAGAGCTCAGGCTTAAAGTCCGCCATCGATTTTAGAACC
ATGGTGGCGCCCTTTTTCTGCTGCTTGGAAACGTTATCAGTTGGAATAAA
GATGACTTGGGATCCCGCTGCCTTTCCGCCTATGAGGCCCACTGGAGCAT
CCTCGAATATAAGACACTTTTTGGGATCTGCGGGCGGATTGAATCGCGAG
GCGGCCAGGAGATATATATCTGGGTAGGGCTTTCCTCTTCCCGGTCCAAG
TGCCGGATCATCGCCACAGACAACGTGGTGAAAGGCCAGGAATATATCCT
TGAAGGACTCGGCCTTCACTTTGAACAGTTTCCTAAACGAACTTGTGGCT
ATGCAGAAGGGTATGCGGTATTCGTGCAAGTGGAGAATCAGATCCCTGAC
CCCTGGCAGCAGAGCCACACTTCCCATGCTCTTATCAACAGCTGCCTCGA
ATTCCTTTTGAAATTCCGCAGGTGACAACGGAAGTTTTAGATCCTTGACG
ATGTGTTGGGAAAATGTACCGACCGGCATTCCCATATGCTGCGTCTGATC
GACTTTGGTGTACGTTTTGCCATATTTAGCCAACAAGTCTTGAACCGTTT
TGAGGTAGATGCCTTCGCTATCTATCAAGGTTCCATCGCAGTCAAAGATG
ACATGAGTGACGGGGCAGTAACACTTCTTGGTGGGCATGTCGACTGATAA
CT
BO06845.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5565-PA | 723 | CG5565-RA | 1..720 | 738..19 | 3600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:24:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5565-RA | 942 | CG5565-RA | 157..876 | 738..19 | 3600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1354977..1355631 | 19..673 | 3275 | 100 | Plus |
2L | 23513712 | 2L | 1355702..1355768 | 672..738 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:24:06 has no hits.
BO06845.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:17 Download gff for
BO06845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-PA | 1..723 | 15..738 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:57 Download gff for
BO06845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-PA | 1..723 | 15..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:54:11 Download gff for
BO06845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 148..879 | 15..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:42:36 Download gff for
BO06845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 148..879 | 15..748 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:42:36 Download gff for
BO06845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1354974..1355629 | 15..671 | 99 | <- | Plus |
2L | 1355702..1355777 | 672..748 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:54:11 Download gff for
BO06845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1354974..1355629 | 15..671 | 99 | <- | Plus |
arm_2L | 1355702..1355777 | 672..748 | 94 | | Plus |
BO06845.complete Sequence
754 bp (754 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630560
> BO06845.complete
GAAGTTATCAGTCGACATGCCCACCAAGAAGTGTTACTGCCCCGTCACTC
ATGTCATCTTTGACTGCGATGGAACCTTGATAGATAGCGAAGGCATCTAC
CTCAAAACGGTTCAAGACTTGTTGGCTAAATATGGCAAAACGTACACCAA
AGTCGATCAGACGCAGCATATGGGAATGCCGGTCGGTACATTTTCCCAAC
ACATCGTCAAGGATCTAAAACTTCCGTTGTCACCTGCGGAATTTCAAAAG
GAATTCGAGGCAGCTGTTGATAAGAGCATGGGAAGTGTGGCTCTGCTGCC
AGGGGTCAGGGATCTGATTCTCCACTTGCACGAATACCGCATACCCTTCT
GCATAGCCACAAGTTCGTTTAGGAAACTGTTCAAAGTGAAGGCCGAGTCC
TTCAAGGATATATTCCTGGCCTTTCACCACGTTGTCTGTGGCGATGATCC
GGCACTTGGACCGGGAAGAGGAAAGCCCTACCCAGATATATATCTCCTGG
CCGCCTCGCGATTCAATCCGCCCGCAGATCCCAAAAAGTGTCTTATATTC
GAGGATGCTCCAGTGGGCCTCATAGGCGGAAAGGCAGCGGGATCCCAAGT
CATCTTTATTCCAACTGATAACGTTTCCAAGCAGCAGAAAAAGGGCGCCA
CCATGGTTCTAAAATCGATGGCGGACTTTAAGCCTGAGCTCTTTGGTCTA
CCACCCTTTGACACCTGCTCCAAATTCGAGTTTGGCGCAAGCTTTCTAGA
CCAT
BO06845.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5565-RA | 723 | CG5565-PA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5565-RA | 942 | CG5565-RA | 157..876 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1354977..1355631 | 736..82 | 3275 | 100 | Minus |
2L | 23513712 | 2L | 1355702..1355768 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:42:14 has no hits.
BO06845.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:48 Download gff for
BO06845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 1..723 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:39 Download gff for
BO06845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 148..879 | 7..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:51 Download gff for
BO06845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 157..876 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:49 Download gff for
BO06845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 148..879 | 7..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:08 Download gff for
BO06845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5565-RA | 157..876 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:08 Download gff for
BO06845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1354975..1355629 | 84..738 | 99 | <- | Minus |
2L | 1355702..1355768 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:51 Download gff for
BO06845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1354975..1355629 | 84..738 | 99 | <- | Minus |
arm_2L | 1355702..1355768 | 17..83 | 100 | | Minus |
BO06845.pep Sequence
Translation from 16 to 754
> BO06845.pep
MPTKKCYCPVTHVIFDCDGTLIDSEGIYLKTVQDLLAKYGKTYTKVDQTQ
HMGMPVGTFSQHIVKDLKLPLSPAEFQKEFEAAVDKSMGSVALLPGVRDL
ILHLHEYRIPFCIATSSFRKLFKVKAESFKDIFLAFHHVVCGDDPALGPG
RGKPYPDIYLLAASRFNPPADPKKCLIFEDAPVGLIGGKAAGSQVIFIPT
DNVSKQQKKGATMVLKSMADFKPELFGLPPFDTCSKFEFGASFLDH
BO06845.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5565-PA | 240 | CG5565-PA | 1..240 | 1..240 | 1275 | 100 | Plus |
Gs1l-PA | 231 | CG15441-PA | 9..229 | 10..231 | 461 | 40.5 | Plus |
Gs1l-PB | 231 | CG15441-PB | 9..229 | 10..231 | 436 | 37.8 | Plus |
CG31924-PB | 236 | CG31924-PB | 8..235 | 3..230 | 424 | 41.3 | Plus |
CG5561-PA | 305 | CG5561-PA | 21..245 | 5..231 | 253 | 28.5 | Plus |