Clone Sequence Records
BO06846.3prime Sequence
905 bp (834 high quality bases) assembled on 2005-12-03
> BO06846.3prime
ATGGTCTAGAAAGCTTGCAATGTTTGGCATTATGGGTGCGGGCACATGGG
TGTTCTGCTGCACCACGGTTGCGATCCAATCGGCGTAGCTGTACACATCC
GTATAGACACCGATTCCGGAGCACTCCCTGCTGCCGTAGCTGACGACTCC
GAATTGCACGGGACGCATTTTGTCCATGTGGCGCACAGTCTGGAAGAGCG
GACCGCCGGAGTCTCCGTTGCACGTATCGGATCCAAGGCGTCCGGCGCAA
ATTTGGTTCTGCTGCACTAACCTGCCAAGAGCTTGCATGCACTGGGATGA
ATTATAGCGCTGGAGCTGGGTGATCTGCAGAACACCTCGTGTCCTGTGTG
TTCTAGTCTCGCCCCAACCGGTGGCAACAAACCATTCTATGCTATCGACT
AATTCCCTCTTGGAGGTACCCAAAATGATGCAAATGGGCGAGATGTGAGC
TTTGAAAGTCACAAATTTGGCCAAGCGAAGGAGCGCGATGTCGTTCAGGT
TTTTGATCTCAGAGAACTTTCCATGCCGGAAGGCCATGTCCACATCGTGC
TCCTCAGCCCTTGGGATGCAGATCTTGCTGTTGCAGTCCTCTGTCGCAGT
ATCATCGTACTCACCGAGTCGCACCTTTACCGCACTTCCTTCGTTAACAC
AATGCGCTGCTGTTAGGACAAACCGCTGGGTAATGAGAGTTCCTCCGCAG
ATTAATTTGACGGAGGAATGGATGTAGGCCATCCACGGATTTGAGTTTAT
GATCGCATCTCTGCCACCAATTATTTTAAAAGCGATAGTATTTGCAGTTA
GCCCGCACCTCGGTTCCAAGTACTCTCCATTGCCCAGAGAACAGAGGACT
CCAATTGCCAGAGCTGTGATCGCTGCAATAGCGCCCCACATGTCGACTGA
TAACT
BO06846.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30090-PA | 876 | CG30090-RA | 1..873 | 891..19 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30090-RA | 999 | CG30090-RA | 23..895 | 891..19 | 4365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:25:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15690478..15690910 | 451..19 | 2165 | 100 | Minus |
2R | 25286936 | 2R | 15689848..15690065 | 891..674 | 1090 | 100 | Minus |
2R | 25286936 | 2R | 15690254..15690432 | 628..450 | 895 | 100 | Minus |
2R | 25286936 | 2R | 15690121..15690166 | 674..629 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:25:46 has no hits.
BO06846.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:19 Download gff for
BO06846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-PA | 1..876 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:00 Download gff for
BO06846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-PA | 1..876 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:25 Download gff for
BO06846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 14..902 | 11..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:36:06 Download gff for
BO06846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 14..902 | 11..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:36:06 Download gff for
BO06846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15689839..15690064 | 675..901 | 98 | -> | Minus |
2R | 15690121..15690166 | 629..674 | 100 | -> | Minus |
2R | 15690254..15690432 | 450..628 | 100 | -> | Minus |
2R | 15690480..15690917 | 11..449 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:25 Download gff for
BO06846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11577344..11577569 | 675..901 | 98 | -> | Minus |
arm_2R | 11577626..11577671 | 629..674 | 100 | -> | Minus |
arm_2R | 11577759..11577937 | 450..628 | 100 | -> | Minus |
arm_2R | 11577985..11578422 | 11..449 | 99 | | Minus |
BO06846.5prime Sequence
905 bp (850 high quality bases) assembled on 2005-12-03
> BO06846.5prime
GAAGTTATCAGTCGACATGTGGGGCGCTATTGCAGCGATCACAGCTCTGG
CAATTGGAGTCCTCTGTTCTCTGGGCAATGGAGAGTACTTGGAACCGAGG
TGCGGGCTAACTGCAAATACTATCGCTTTTAAAATAATTGGTGGCAGAGA
TGCGATCATAAACTCAAATCCGTGGATGGCCTACATCCATTCCTCCGTCA
AATTAATCTGCGGAGGAACTCTCATTACCCAGCGGTTTGTCCTAACAGCA
GCGCATTGTGTTAACGAAGGAAGTGCGGTAAAGGTGCGACTCGGTGAGTA
CGATGATACTGCGACAGAGGACTGCAACAGCAAGATCTGCATCCCAAGGG
CTGAGGAGCACGATGTGGACATGGCCTTCCGGCATGGAAAGTTCTCTGAG
ATCAAAAACCTGAACGACATCGCGCTCCTTCGCTTGGCCAAATTTGTGAC
TTTCAAAGCTCACATCTCGCCCATTTGCATCATTTTGGGTACCTCCAAGA
GGGAATTAGTCGATAGCATAGAATGGTTTGTTGCCACCGGTTGGGGCGAG
ACTAGAACACACAGGACACGAGGTGTTCTGCAGATCACCCAGCTCCAGCG
CTATAATTCATCCCAGTGCATGCAAGCTCTTGGCAGGTTAGTGCAGCAGA
ACCAAATTTGCGCCGGACGCCTTGGATCCGATACGTGCAACGGAGACTCC
GGCGGTCCGCTCTTCCAGACTGTGCGCCACATGGACAAAATGCGTCCCGT
GCAATTCGGAGTCGTCAGCTACGGCAGCAGGGAGTGCTCCGGAATCGGTG
TCTATACNGATGTGTACAGCTACGCCGATTGGATCGCAACCGTGGTGCAG
CAGAACACCCATGTGCCCGCACCCATAATGCCAAACATTGCAAGCTTTCT
AGACC
BO06846.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30090-PA | 876 | CG30090-RA | 1..873 | 17..889 | 4346 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30090-RA | 999 | CG30090-RA | 23..895 | 17..889 | 4354 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15690478..15690910 | 457..889 | 2154 | 99.8 | Plus |
2R | 25286936 | 2R | 15689848..15690065 | 17..234 | 1090 | 100 | Plus |
2R | 25286936 | 2R | 15690254..15690432 | 280..458 | 895 | 100 | Plus |
2R | 25286936 | 2R | 15690121..15690166 | 234..279 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:33:29 has no hits.
BO06846.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:20 Download gff for
BO06846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-PA | 1..876 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:01 Download gff for
BO06846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-PA | 1..876 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:02:33 Download gff for
BO06846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 14..902 | 7..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:10 Download gff for
BO06846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 14..902 | 7..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:10 Download gff for
BO06846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15689839..15690064 | 7..233 | 98 | -> | Plus |
2R | 15690121..15690166 | 234..279 | 100 | -> | Plus |
2R | 15690254..15690432 | 280..458 | 100 | -> | Plus |
2R | 15690480..15690917 | 459..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:02:33 Download gff for
BO06846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11577344..11577569 | 7..233 | 98 | -> | Plus |
arm_2R | 11577626..11577671 | 234..279 | 100 | -> | Plus |
arm_2R | 11577759..11577937 | 280..458 | 100 | -> | Plus |
arm_2R | 11577985..11578422 | 459..897 | 99 | | Plus |
BO06846.complete Sequence
907 bp (907 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630561
> BO06846.complete
GAAGTTATCAGTCGACATGTGGGGCGCTATTGCAGCGATCACAGCTCTGG
CAATTGGAGTCCTCTGTTCTCTGGGCAATGGAGAGTACTTGGAACCGAGG
TGCGGGCTAACTGCAAATACTATCGCTTTTAAAATAATTGGTGGCAGAGA
TGCGATCATAAACTCAAATCCGTGGATGGCCTACATCCATTCCTCCGTCA
AATTAATCTGCGGAGGAACTCTCATTACCCAGCGGTTTGTCCTAACAGCA
GCGCATTGTGTTAACGAAGGAAGTGCGGTAAAGGTGCGACTCGGTGAGTA
CGATGATACTGCGACAGAGGACTGCAACAGCAAGATCTGCATCCCAAGGG
CTGAGGAGCACGATGTGGACATGGCCTTCCGGCATGGAAAGTTCTCTGAG
ATCAAAAACCTGAACGACATCGCGCTCCTTCGCTTGGCCAAATTTGTGAC
TTTCAAAGCTCACATCTCGCCCATTTGCATCATTTTGGGTACCTCCAAGA
GGGAATTAGTCGATAGCATAGAATGGTTTGTTGCCACCGGTTGGGGCGAG
ACTAGAACACACAGGACACGAGGTGTTCTGCAGATCACCCAGCTCCAGCG
CTATAATTCATCCCAGTGCATGCAAGCTCTTGGCAGGTTAGTGCAGCAGA
ACCAAATTTGCGCCGGACGCCTTGGATCCGATACGTGCAACGGAGACTCC
GGCGGTCCGCTCTTCCAGACTGTGCGCCACATGGACAAAATGCGTCCCGT
GCAATTCGGAGTCGTCAGCTACGGCAGCAGGGAGTGCTCCGGAATCGGTG
TCTATACGGATGTGTACAGCTACGCCGATTGGATCGCAACCGTGGTGCAG
CAGAACACCCATGTGCCCGCACCCATAATGCCAAACATTGCAAGCTTTCT
AGACCAT
BO06846.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30090-RA | 876 | CG30090-PA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30090-RA | 999 | CG30090-RA | 23..895 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15690478..15690910 | 457..889 | 2165 | 100 | Plus |
2R | 25286936 | 2R | 15689848..15690065 | 17..234 | 1090 | 100 | Plus |
2R | 25286936 | 2R | 15690254..15690432 | 280..458 | 895 | 100 | Plus |
2R | 25286936 | 2R | 15690121..15690166 | 234..279 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:58:06 has no hits.
BO06846.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:35 Download gff for
BO06846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 1..876 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:42 Download gff for
BO06846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 2..885 | 15..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:58 Download gff for
BO06846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 23..895 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:36 Download gff for
BO06846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 2..885 | 15..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:18 Download gff for
BO06846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30090-RA | 23..895 | 17..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:18 Download gff for
BO06846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15689848..15690064 | 17..233 | 100 | -> | Plus |
2R | 15690121..15690166 | 234..279 | 100 | -> | Plus |
2R | 15690254..15690432 | 280..458 | 100 | -> | Plus |
2R | 15690480..15690910 | 459..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:58 Download gff for
BO06846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11577353..11577569 | 17..233 | 100 | -> | Plus |
arm_2R | 11577626..11577671 | 234..279 | 100 | -> | Plus |
arm_2R | 11577759..11577937 | 280..458 | 100 | -> | Plus |
arm_2R | 11577985..11578415 | 459..891 | 99 | | Plus |
BO06846.pep Sequence
Translation from 16 to 907
> BO06846.pep
MWGAIAAITALAIGVLCSLGNGEYLEPRCGLTANTIAFKIIGGRDAIINS
NPWMAYIHSSVKLICGGTLITQRFVLTAAHCVNEGSAVKVRLGEYDDTAT
EDCNSKICIPRAEEHDVDMAFRHGKFSEIKNLNDIALLRLAKFVTFKAHI
SPICIILGTSKRELVDSIEWFVATGWGETRTHRTRGVLQITQLQRYNSSQ
CMQALGRLVQQNQICAGRLGSDTCNGDSGGPLFQTVRHMDKMRPVQFGVV
SYGSRECSGIGVYTDVYSYADWIATVVQQNTHVPAPIMPNIASFLDH
BO06846.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30090-PA | 291 | CG30090-PA | 1..291 | 1..291 | 1538 | 100 | Plus |
CG30286-PB | 277 | CG30286-PB | 20..277 | 23..283 | 547 | 39.5 | Plus |
CG30088-PB | 281 | CG30088-PB | 28..279 | 24..280 | 546 | 42.6 | Plus |
CG18636-PA | 349 | CG18636-PA | 24..281 | 20..276 | 544 | 41.3 | Plus |
CG30082-PB | 280 | CR30082-PB | 22..276 | 23..278 | 528 | 43 | Plus |