Clone BO06846 Report

Search the DGRC for BO06846

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG30090-RA
Protein status:BO06846.pep: validated full length
Sequenced Size:907

Clone Sequence Records

BO06846.3prime Sequence

905 bp (834 high quality bases) assembled on 2005-12-03

> BO06846.3prime
ATGGTCTAGAAAGCTTGCAATGTTTGGCATTATGGGTGCGGGCACATGGG
TGTTCTGCTGCACCACGGTTGCGATCCAATCGGCGTAGCTGTACACATCC
GTATAGACACCGATTCCGGAGCACTCCCTGCTGCCGTAGCTGACGACTCC
GAATTGCACGGGACGCATTTTGTCCATGTGGCGCACAGTCTGGAAGAGCG
GACCGCCGGAGTCTCCGTTGCACGTATCGGATCCAAGGCGTCCGGCGCAA
ATTTGGTTCTGCTGCACTAACCTGCCAAGAGCTTGCATGCACTGGGATGA
ATTATAGCGCTGGAGCTGGGTGATCTGCAGAACACCTCGTGTCCTGTGTG
TTCTAGTCTCGCCCCAACCGGTGGCAACAAACCATTCTATGCTATCGACT
AATTCCCTCTTGGAGGTACCCAAAATGATGCAAATGGGCGAGATGTGAGC
TTTGAAAGTCACAAATTTGGCCAAGCGAAGGAGCGCGATGTCGTTCAGGT
TTTTGATCTCAGAGAACTTTCCATGCCGGAAGGCCATGTCCACATCGTGC
TCCTCAGCCCTTGGGATGCAGATCTTGCTGTTGCAGTCCTCTGTCGCAGT
ATCATCGTACTCACCGAGTCGCACCTTTACCGCACTTCCTTCGTTAACAC
AATGCGCTGCTGTTAGGACAAACCGCTGGGTAATGAGAGTTCCTCCGCAG
ATTAATTTGACGGAGGAATGGATGTAGGCCATCCACGGATTTGAGTTTAT
GATCGCATCTCTGCCACCAATTATTTTAAAAGCGATAGTATTTGCAGTTA
GCCCGCACCTCGGTTCCAAGTACTCTCCATTGCCCAGAGAACAGAGGACT
CCAATTGCCAGAGCTGTGATCGCTGCAATAGCGCCCCACATGTCGACTGA
TAACT

BO06846.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG30090-PA 876 CG30090-RA 1..873 891..19 4365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG30090-RA 999 CG30090-RA 23..895 891..19 4365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15690478..15690910 451..19 2165 100 Minus
2R 25286936 2R 15689848..15690065 891..674 1090 100 Minus
2R 25286936 2R 15690254..15690432 628..450 895 100 Minus
2R 25286936 2R 15690121..15690166 674..629 230 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:25:46 has no hits.

BO06846.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:19 Download gff for BO06846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30090-PA 1..876 15..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:00 Download gff for BO06846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30090-PA 1..876 15..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:25 Download gff for BO06846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30090-RA 14..902 11..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:36:06 Download gff for BO06846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30090-RA 14..902 11..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:36:06 Download gff for BO06846.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15689839..15690064 675..901 98 -> Minus
2R 15690121..15690166 629..674 100 -> Minus
2R 15690254..15690432 450..628 100 -> Minus
2R 15690480..15690917 11..449 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:25 Download gff for BO06846.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11577344..11577569 675..901 98 -> Minus
arm_2R 11577626..11577671 629..674 100 -> Minus
arm_2R 11577759..11577937 450..628 100 -> Minus
arm_2R 11577985..11578422 11..449 99   Minus

BO06846.5prime Sequence

905 bp (850 high quality bases) assembled on 2005-12-03

> BO06846.5prime
GAAGTTATCAGTCGACATGTGGGGCGCTATTGCAGCGATCACAGCTCTGG
CAATTGGAGTCCTCTGTTCTCTGGGCAATGGAGAGTACTTGGAACCGAGG
TGCGGGCTAACTGCAAATACTATCGCTTTTAAAATAATTGGTGGCAGAGA
TGCGATCATAAACTCAAATCCGTGGATGGCCTACATCCATTCCTCCGTCA
AATTAATCTGCGGAGGAACTCTCATTACCCAGCGGTTTGTCCTAACAGCA
GCGCATTGTGTTAACGAAGGAAGTGCGGTAAAGGTGCGACTCGGTGAGTA
CGATGATACTGCGACAGAGGACTGCAACAGCAAGATCTGCATCCCAAGGG
CTGAGGAGCACGATGTGGACATGGCCTTCCGGCATGGAAAGTTCTCTGAG
ATCAAAAACCTGAACGACATCGCGCTCCTTCGCTTGGCCAAATTTGTGAC
TTTCAAAGCTCACATCTCGCCCATTTGCATCATTTTGGGTACCTCCAAGA
GGGAATTAGTCGATAGCATAGAATGGTTTGTTGCCACCGGTTGGGGCGAG
ACTAGAACACACAGGACACGAGGTGTTCTGCAGATCACCCAGCTCCAGCG
CTATAATTCATCCCAGTGCATGCAAGCTCTTGGCAGGTTAGTGCAGCAGA
ACCAAATTTGCGCCGGACGCCTTGGATCCGATACGTGCAACGGAGACTCC
GGCGGTCCGCTCTTCCAGACTGTGCGCCACATGGACAAAATGCGTCCCGT
GCAATTCGGAGTCGTCAGCTACGGCAGCAGGGAGTGCTCCGGAATCGGTG
TCTATACNGATGTGTACAGCTACGCCGATTGGATCGCAACCGTGGTGCAG
CAGAACACCCATGTGCCCGCACCCATAATGCCAAACATTGCAAGCTTTCT
AGACC

BO06846.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG30090-PA 876 CG30090-RA 1..873 17..889 4346 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30090-RA 999 CG30090-RA 23..895 17..889 4354 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15690478..15690910 457..889 2154 99.8 Plus
2R 25286936 2R 15689848..15690065 17..234 1090 100 Plus
2R 25286936 2R 15690254..15690432 280..458 895 100 Plus
2R 25286936 2R 15690121..15690166 234..279 230 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:33:29 has no hits.

BO06846.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:20 Download gff for BO06846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30090-PA 1..876 17..893 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:01 Download gff for BO06846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30090-PA 1..876 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:02:33 Download gff for BO06846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30090-RA 14..902 7..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:10 Download gff for BO06846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30090-RA 14..902 7..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:10 Download gff for BO06846.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15689839..15690064 7..233 98 -> Plus
2R 15690121..15690166 234..279 100 -> Plus
2R 15690254..15690432 280..458 100 -> Plus
2R 15690480..15690917 459..897 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:02:33 Download gff for BO06846.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11577344..11577569 7..233 98 -> Plus
arm_2R 11577626..11577671 234..279 100 -> Plus
arm_2R 11577759..11577937 280..458 100 -> Plus
arm_2R 11577985..11578422 459..897 99   Plus

BO06846.complete Sequence

907 bp (907 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630561

> BO06846.complete
GAAGTTATCAGTCGACATGTGGGGCGCTATTGCAGCGATCACAGCTCTGG
CAATTGGAGTCCTCTGTTCTCTGGGCAATGGAGAGTACTTGGAACCGAGG
TGCGGGCTAACTGCAAATACTATCGCTTTTAAAATAATTGGTGGCAGAGA
TGCGATCATAAACTCAAATCCGTGGATGGCCTACATCCATTCCTCCGTCA
AATTAATCTGCGGAGGAACTCTCATTACCCAGCGGTTTGTCCTAACAGCA
GCGCATTGTGTTAACGAAGGAAGTGCGGTAAAGGTGCGACTCGGTGAGTA
CGATGATACTGCGACAGAGGACTGCAACAGCAAGATCTGCATCCCAAGGG
CTGAGGAGCACGATGTGGACATGGCCTTCCGGCATGGAAAGTTCTCTGAG
ATCAAAAACCTGAACGACATCGCGCTCCTTCGCTTGGCCAAATTTGTGAC
TTTCAAAGCTCACATCTCGCCCATTTGCATCATTTTGGGTACCTCCAAGA
GGGAATTAGTCGATAGCATAGAATGGTTTGTTGCCACCGGTTGGGGCGAG
ACTAGAACACACAGGACACGAGGTGTTCTGCAGATCACCCAGCTCCAGCG
CTATAATTCATCCCAGTGCATGCAAGCTCTTGGCAGGTTAGTGCAGCAGA
ACCAAATTTGCGCCGGACGCCTTGGATCCGATACGTGCAACGGAGACTCC
GGCGGTCCGCTCTTCCAGACTGTGCGCCACATGGACAAAATGCGTCCCGT
GCAATTCGGAGTCGTCAGCTACGGCAGCAGGGAGTGCTCCGGAATCGGTG
TCTATACGGATGTGTACAGCTACGCCGATTGGATCGCAACCGTGGTGCAG
CAGAACACCCATGTGCCCGCACCCATAATGCCAAACATTGCAAGCTTTCT
AGACCAT

BO06846.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG30090-RA 876 CG30090-PA 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG30090-RA 999 CG30090-RA 23..895 17..889 4365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15690478..15690910 457..889 2165 100 Plus
2R 25286936 2R 15689848..15690065 17..234 1090 100 Plus
2R 25286936 2R 15690254..15690432 280..458 895 100 Plus
2R 25286936 2R 15690121..15690166 234..279 230 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:58:06 has no hits.

BO06846.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:35 Download gff for BO06846.complete
Subject Subject Range Query Range Percent Splice Strand
CG30090-RA 1..876 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:42 Download gff for BO06846.complete
Subject Subject Range Query Range Percent Splice Strand
CG30090-RA 2..885 15..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:58 Download gff for BO06846.complete
Subject Subject Range Query Range Percent Splice Strand
CG30090-RA 23..895 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:36 Download gff for BO06846.complete
Subject Subject Range Query Range Percent Splice Strand
CG30090-RA 2..885 15..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:18 Download gff for BO06846.complete
Subject Subject Range Query Range Percent Splice Strand
CG30090-RA 23..895 17..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:18 Download gff for BO06846.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15689848..15690064 17..233 100 -> Plus
2R 15690121..15690166 234..279 100 -> Plus
2R 15690254..15690432 280..458 100 -> Plus
2R 15690480..15690910 459..891 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:58 Download gff for BO06846.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11577353..11577569 17..233 100 -> Plus
arm_2R 11577626..11577671 234..279 100 -> Plus
arm_2R 11577759..11577937 280..458 100 -> Plus
arm_2R 11577985..11578415 459..891 99   Plus

BO06846.pep Sequence

Translation from 16 to 907

> BO06846.pep
MWGAIAAITALAIGVLCSLGNGEYLEPRCGLTANTIAFKIIGGRDAIINS
NPWMAYIHSSVKLICGGTLITQRFVLTAAHCVNEGSAVKVRLGEYDDTAT
EDCNSKICIPRAEEHDVDMAFRHGKFSEIKNLNDIALLRLAKFVTFKAHI
SPICIILGTSKRELVDSIEWFVATGWGETRTHRTRGVLQITQLQRYNSSQ
CMQALGRLVQQNQICAGRLGSDTCNGDSGGPLFQTVRHMDKMRPVQFGVV
SYGSRECSGIGVYTDVYSYADWIATVVQQNTHVPAPIMPNIASFLDH

BO06846.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG30090-PA 291 CG30090-PA 1..291 1..291 1538 100 Plus
CG30286-PB 277 CG30286-PB 20..277 23..283 547 39.5 Plus
CG30088-PB 281 CG30088-PB 28..279 24..280 546 42.6 Plus
CG18636-PA 349 CG18636-PA 24..281 20..276 544 41.3 Plus
CG30082-PB 280 CR30082-PB 22..276 23..278 528 43 Plus