Clone BO06848 Report

Search the DGRC for BO06848

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG32450-RA
Protein status:BO06848.pep: validated full length
Sequenced Size:508

Clone Sequence Records

BO06848.3prime Sequence

506 bp (505 high quality bases) assembled on 2005-12-03

> BO06848.3prime
ATGGTCTAGAAAGCTTGCATCATCGGATCTATCGGTTTTGCGCAGCCAGT
GGGCATTGCTGCTTTCACATCTCTTTGCTTTTGGTTCGGATGGATCAGTG
GTTAATAGGAGGGGGTCAGAAATGTCCTTTCGCTTCCAGATTCCCTGCTT
GTATTCCGGACCGTACTTGTCTTTCATACGCTGTTCAAGCTCGTACAATT
TTAATGGTGTCCGTTTAGCCACTGTATGCATACTCCGCACATATTTGTAC
ACCCCATAGCCGATGCAGGCCAGAATTAAGGGAACTACCACAAACAGCCC
CACGTTTAAACTATTCAGCTCGGGATCGCTGACCACGTGGGTGACATCGA
CGGTTTCCAGGGCAAAGGGTGGGTAAAAGAAGCGAATGATCTTATAAGTG
GCATTGGCCAAAGTATGTTTTGGAAAAGGCTTCACGATGTCCACAAACCT
CAACGACCAGTGCGAGTCCGGCGGCGGTACCGTTATATCCATGTCGACTG
ATAACT

BO06848.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-PA 477 CG32450-RA 1..474 492..19 2370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-RA 821 CG32450-RA 117..590 492..19 2370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22329894..22330157 492..229 1320 100 Minus
3L 28110227 3L 22330216..22330426 229..19 1055 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:07:34 has no hits.

BO06848.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:22 Download gff for BO06848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-PA 1..477 15..492 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:05 Download gff for BO06848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-PA 1..477 15..492 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:09 Download gff for BO06848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..595 11..492 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:56:15 Download gff for BO06848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..595 11..492 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:56:15 Download gff for BO06848.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22329894..22330157 229..492 100 -> Minus
3L 22330217..22330431 11..228 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:09 Download gff for BO06848.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22322994..22323257 229..492 100 -> Minus
arm_3L 22323317..22323531 11..228 98   Minus

BO06848.5prime Sequence

506 bp (505 high quality bases) assembled on 2005-12-03

> BO06848.5prime
GAAGTTATCAGTCGACATGGATATAACGGTACCGCCGCCGGACTCGCACT
GGTCGTTGAGGTTTGTGGACATCGTGAAGCCTTTTCCAAAACATACTTTG
GCCAATGCCACTTATAAGATCATTCGCTTCTTTTACCCACCCTTTGCCCT
GGAAACCGTCGATGTCACCCACGTGGTCAGCGATCCCGAGCTGAATAGTT
TAAACGTGGGGCTGTTTGTGGTAGTTCCCTTAATTCTGGCCTGCATCGGC
TATGGGGTGTACAAATATGTGCGGAGTATGCATACAGTGGCTAAACGGAC
ACCATTAAAATTGTACGAGCTTGAACAGCGTATGAAAGACAAGTACGGTC
CGGAATACAAGCAGGGAATCTGGAAGCGAAAGGACATTTCTGACCCCCTC
CTATTAACCACTGATCCATCCGAACCAAAAGCAAAGAGATGTGAAAGCAG
CAATGCCCACTGGCTGCGCAAAACCGATAGATCCGATGATGCAAGCTTTC
TAGACC

BO06848.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-PA 477 CG32450-RA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-RA 821 CG32450-RA 117..590 17..490 2370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22329894..22330157 17..280 1320 100 Plus
3L 28110227 3L 22330216..22330426 280..490 1055 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:22:30 has no hits.

BO06848.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:25 Download gff for BO06848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-PA 1..477 17..494 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:06 Download gff for BO06848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-PA 1..477 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:15 Download gff for BO06848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..595 17..498 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:13:06 Download gff for BO06848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..595 17..498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:13:06 Download gff for BO06848.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22329894..22330157 17..280 100 -> Plus
3L 22330217..22330431 281..498 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:15 Download gff for BO06848.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22322994..22323257 17..280 100 -> Plus
arm_3L 22323317..22323531 281..498 98   Plus

BO06848.complete Sequence

508 bp (508 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630562

> BO06848.complete
GAAGTTATCAGTCGACATGGATATAACGGTACCGCCGCCGGACTCGCACT
GGTCGTTGAGGTTTGTGGACATCGTGAAGCCTTTTCCAAAACATACTTTG
GCCAATGCCACTTATAAGATCATTCGCTTCTTTTACCCACCCTTTGCCCT
GGAAACCGTCGATGTCACCCACGTGGTCAGCGATCCCGAGCTGAATAGTT
TAAACGTGGGGCTGTTTGTGGTAGTTCCCTTAATTCTGGCCTGCATCGGC
TATGGGGTGTACAAATATGTGCGGAGTATGCATACAGTGGCTAAACGGAC
ACCATTAAAATTGTACGAGCTTGAACAGCGTATGAAAGACAAGTACGGTC
CGGAATACAAGCAGGGAATCTGGAAGCGAAAGGACATTTCTGACCCCCTC
CTATTAACCACTGATCCATCCGAACCAAAAGCAAAGAGATGTGAAAGCAG
CAATGCCCACTGGCTGCGCAAAACCGATAGATCCGATGATGCAAGCTTTC
TAGACCAT

BO06848.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-RA 477 CG32450-PA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-RA 821 CG32450-RA 117..590 17..490 2370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22329894..22330157 17..280 1320 100 Plus
3L 28110227 3L 22330216..22330426 280..490 1055 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:37:47 has no hits.

BO06848.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:37 Download gff for BO06848.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 1..477 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:43 Download gff for BO06848.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..595 17..498 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:53 Download gff for BO06848.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..590 17..492 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:37 Download gff for BO06848.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..595 17..498 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:56 Download gff for BO06848.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 117..590 17..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:56 Download gff for BO06848.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22329894..22330157 17..280 100 -> Plus
3L 22330217..22330426 281..492 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:53 Download gff for BO06848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22322994..22323257 17..280 100 -> Plus
arm_3L 22323317..22323526 281..492 99   Plus

BO06848.pep Sequence

Translation from 16 to 508

> BO06848.pep
MDITVPPPDSHWSLRFVDIVKPFPKHTLANATYKIIRFFYPPFALETVDV
THVVSDPELNSLNVGLFVVVPLILACIGYGVYKYVRSMHTVAKRTPLKLY
ELEQRMKDKYGPEYKQGIWKRKDISDPLLLTTDPSEPKAKRCESSNAHWL
RKTDRSDDASFLDH

BO06848.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-PA 158 CG32450-PA 1..158 1..158 848 100 Plus