Clone Sequence Records
BO06848.3prime Sequence
506 bp (505 high quality bases) assembled on 2005-12-03
> BO06848.3prime
ATGGTCTAGAAAGCTTGCATCATCGGATCTATCGGTTTTGCGCAGCCAGT
GGGCATTGCTGCTTTCACATCTCTTTGCTTTTGGTTCGGATGGATCAGTG
GTTAATAGGAGGGGGTCAGAAATGTCCTTTCGCTTCCAGATTCCCTGCTT
GTATTCCGGACCGTACTTGTCTTTCATACGCTGTTCAAGCTCGTACAATT
TTAATGGTGTCCGTTTAGCCACTGTATGCATACTCCGCACATATTTGTAC
ACCCCATAGCCGATGCAGGCCAGAATTAAGGGAACTACCACAAACAGCCC
CACGTTTAAACTATTCAGCTCGGGATCGCTGACCACGTGGGTGACATCGA
CGGTTTCCAGGGCAAAGGGTGGGTAAAAGAAGCGAATGATCTTATAAGTG
GCATTGGCCAAAGTATGTTTTGGAAAAGGCTTCACGATGTCCACAAACCT
CAACGACCAGTGCGAGTCCGGCGGCGGTACCGTTATATCCATGTCGACTG
ATAACT
BO06848.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32450-PA | 477 | CG32450-RA | 1..474 | 492..19 | 2370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32450-RA | 821 | CG32450-RA | 117..590 | 492..19 | 2370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22329894..22330157 | 492..229 | 1320 | 100 | Minus |
3L | 28110227 | 3L | 22330216..22330426 | 229..19 | 1055 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:07:34 has no hits.
BO06848.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:22 Download gff for
BO06848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-PA | 1..477 | 15..492 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:05 Download gff for
BO06848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-PA | 1..477 | 15..492 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:09 Download gff for
BO06848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..595 | 11..492 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:56:15 Download gff for
BO06848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..595 | 11..492 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:56:15 Download gff for
BO06848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22329894..22330157 | 229..492 | 100 | -> | Minus |
3L | 22330217..22330431 | 11..228 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:09 Download gff for
BO06848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22322994..22323257 | 229..492 | 100 | -> | Minus |
arm_3L | 22323317..22323531 | 11..228 | 98 | | Minus |
BO06848.5prime Sequence
506 bp (505 high quality bases) assembled on 2005-12-03
> BO06848.5prime
GAAGTTATCAGTCGACATGGATATAACGGTACCGCCGCCGGACTCGCACT
GGTCGTTGAGGTTTGTGGACATCGTGAAGCCTTTTCCAAAACATACTTTG
GCCAATGCCACTTATAAGATCATTCGCTTCTTTTACCCACCCTTTGCCCT
GGAAACCGTCGATGTCACCCACGTGGTCAGCGATCCCGAGCTGAATAGTT
TAAACGTGGGGCTGTTTGTGGTAGTTCCCTTAATTCTGGCCTGCATCGGC
TATGGGGTGTACAAATATGTGCGGAGTATGCATACAGTGGCTAAACGGAC
ACCATTAAAATTGTACGAGCTTGAACAGCGTATGAAAGACAAGTACGGTC
CGGAATACAAGCAGGGAATCTGGAAGCGAAAGGACATTTCTGACCCCCTC
CTATTAACCACTGATCCATCCGAACCAAAAGCAAAGAGATGTGAAAGCAG
CAATGCCCACTGGCTGCGCAAAACCGATAGATCCGATGATGCAAGCTTTC
TAGACC
BO06848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32450-PA | 477 | CG32450-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32450-RA | 821 | CG32450-RA | 117..590 | 17..490 | 2370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:22:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22329894..22330157 | 17..280 | 1320 | 100 | Plus |
3L | 28110227 | 3L | 22330216..22330426 | 280..490 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:22:30 has no hits.
BO06848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:25 Download gff for
BO06848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-PA | 1..477 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:06 Download gff for
BO06848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-PA | 1..477 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:15 Download gff for
BO06848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..595 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:13:06 Download gff for
BO06848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..595 | 17..498 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:13:06 Download gff for
BO06848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22329894..22330157 | 17..280 | 100 | -> | Plus |
3L | 22330217..22330431 | 281..498 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:15 Download gff for
BO06848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22322994..22323257 | 17..280 | 100 | -> | Plus |
arm_3L | 22323317..22323531 | 281..498 | 98 | | Plus |
BO06848.complete Sequence
508 bp (508 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630562
> BO06848.complete
GAAGTTATCAGTCGACATGGATATAACGGTACCGCCGCCGGACTCGCACT
GGTCGTTGAGGTTTGTGGACATCGTGAAGCCTTTTCCAAAACATACTTTG
GCCAATGCCACTTATAAGATCATTCGCTTCTTTTACCCACCCTTTGCCCT
GGAAACCGTCGATGTCACCCACGTGGTCAGCGATCCCGAGCTGAATAGTT
TAAACGTGGGGCTGTTTGTGGTAGTTCCCTTAATTCTGGCCTGCATCGGC
TATGGGGTGTACAAATATGTGCGGAGTATGCATACAGTGGCTAAACGGAC
ACCATTAAAATTGTACGAGCTTGAACAGCGTATGAAAGACAAGTACGGTC
CGGAATACAAGCAGGGAATCTGGAAGCGAAAGGACATTTCTGACCCCCTC
CTATTAACCACTGATCCATCCGAACCAAAAGCAAAGAGATGTGAAAGCAG
CAATGCCCACTGGCTGCGCAAAACCGATAGATCCGATGATGCAAGCTTTC
TAGACCAT
BO06848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32450-RA | 477 | CG32450-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32450-RA | 821 | CG32450-RA | 117..590 | 17..490 | 2370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22329894..22330157 | 17..280 | 1320 | 100 | Plus |
3L | 28110227 | 3L | 22330216..22330426 | 280..490 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:37:47 has no hits.
BO06848.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:37 Download gff for
BO06848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 1..477 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:43 Download gff for
BO06848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..595 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:53 Download gff for
BO06848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..590 | 17..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:37 Download gff for
BO06848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..595 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:56 Download gff for
BO06848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32450-RA | 117..590 | 17..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:56 Download gff for
BO06848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22329894..22330157 | 17..280 | 100 | -> | Plus |
3L | 22330217..22330426 | 281..492 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:53 Download gff for
BO06848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22322994..22323257 | 17..280 | 100 | -> | Plus |
arm_3L | 22323317..22323526 | 281..492 | 99 | | Plus |
BO06848.pep Sequence
Translation from 16 to 508
> BO06848.pep
MDITVPPPDSHWSLRFVDIVKPFPKHTLANATYKIIRFFYPPFALETVDV
THVVSDPELNSLNVGLFVVVPLILACIGYGVYKYVRSMHTVAKRTPLKLY
ELEQRMKDKYGPEYKQGIWKRKDISDPLLLTTDPSEPKAKRCESSNAHWL
RKTDRSDDASFLDH
BO06848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32450-PA | 158 | CG32450-PA | 1..158 | 1..158 | 848 | 100 | Plus |