Clone BO06849 Report

Search the DGRC for BO06849

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:49
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO06849.pep: validated full length
Sequenced Size:1213

Clone Sequence Records

BO06849.3prime Sequence

859 bp (783 high quality bases) assembled on 2005-12-03

> BO06849.3prime
ATGGTCTAGAAAGCTTGCCAACGCCACGATATTTACTTTGTCCTGACCAC
CTATGCATTTGACCGTTTCCAAGCGCGTAGGCCCATCCGCTCCGGCTGGA
CTGCTAACCATAAAGGGGAATTCGGCCAGGCCGTAGCAGGCAGCGCCATA
ATTACCCAGCCGATCTACGGCGATGAGAGCACCCATGAAATCCTTGTGGT
GCTTGAGAATGCGGCGAAGGCCCTCTTGAGCTGCCTCAGCCGGAGGTTTT
CCCGCCCGCATGGTCTCCACCGCTAGCAGGGAGGGCAGGAAGCGCATCAT
CACATCTCCATCTCCGGTTGCCACGGCTGCACCCACCTCGTTGTCTGCAT
AAGCGCCAGCACCCGGAATGGGGGAGTCGCCGACCCGTCCGGGAATCTTG
TGCCGCGCCCCGTTGGTGGAGGTGCCGGCGTGGATGTTGCTTTCCACGTC
GATGGCGATCATGCCGATGGTATCGTGGTTCTTGCGTCCGATCTCATACT
CATTGCGGGCACGGTCCTCCTTCCAGCGGGTCAGCGGAGTCGGCCGCGGC
TTATACGGGCCGCAAGAGACCTTGGGATCCGGGTGAACGTTCTTCCAGAA
GTTTGGCTGGCAGTTCTCAGCCGTCCACTGTAACCACATGTCCTTCGACT
CCGGCGTGACCAGCGACTCTGATTCGAATCCCATAGCATTGGCGAAAGCT
GACGCCGCATCACCCACCAGCATGGTGTGCTGCGTGTGTTCCAGAACATG
CCGGGCTACCTTAATGGCATCCTTAATGCGTCGCAGACCAGCCACTGCCC
GCACATCCATGGTGGCCCCGTCCATGACCATGGCATCCAGTGTGGTTTCG
CCCAACTCG

BO06849.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-PA 1182 CG1827-RA 339..1179 859..19 4180 99.8 Minus
CG1827-PB 1011 CG1827-RB 168..1008 859..19 4180 99.8 Minus
CG10474-PA 1026 CG10474-RA 721..767 297..251 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-RD 1341 CG1827-RD 439..1279 859..19 4190 99.9 Minus
CG10474-RA 1273 CG10474-RA 607..856 480..231 380 76.8 Minus
CG10474-RA 1273 CG10474-RA 256..419 840..677 220 76.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9589541..9590381 859..19 4190 99.9 Minus
2R 25286936 2R 19285812..19286061 231..480 380 76.8 Plus
2R 25286936 2R 19286249..19286412 677..840 220 75.6 Plus
Blast to na_te.dros performed on 2015-02-10 16:35:32 has no hits.

BO06849.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:26 Download gff for BO06849.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-PA 339..1182 16..859 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:07 Download gff for BO06849.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-PB 168..1011 16..859 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:02:36 Download gff for BO06849.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 439..1279 19..859 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:25 Download gff for BO06849.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 439..1279 19..859 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:25 Download gff for BO06849.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9589541..9590381 19..859 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:02:36 Download gff for BO06849.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5477046..5477886 19..859 99   Minus

BO06849.5prime Sequence

872 bp (818 high quality bases) assembled on 2005-12-03

> BO06849.5prime
GAAGTTATCAGTCGACATGAGAAGGCACTTGCGGGCAAGTCTTTGGATCC
TTTGTTTGGCCACCATGGCGTTTTCCATCCTTGCGGCAGTAAATACTTCG
CCCAAACCAACGCTGACTTCGGCGTTTAGTGGAAAAGCTGGCACCACTGC
CGTGAAGGCGAATAAGACGACGGGTGAGCTGCTGCCCATGGTCATTAACA
CTTGGAACTTCACGGCTGCCAATGTGCTCGCCTGGCGAATCCTGAAGCAA
AGCAAGGGTGGACTCCGGCAGACGCGGAATGCGGTAGTGGAGGGCTGCTC
GAAGTGTGAGAAACTCCAGTGTGACCGAACGGTGGGCTATGGCGGATCGC
CGGACGAGTTGGGCGAAACCACACTGGATGCCATGGTCATGGACGGGGCC
ACCATGGATGTGGGGGCAGTGGCTGGTCTGCGACGCATTAAGGATGCCAT
TAAGGTAGCCCGGCATGTTCTGGAACACACGCAGCACACCATGCTGGTGG
GTGATGCGGCGTCAGCTTTCGCCAATGCTATGGGATTCGAATCAGAGTCG
CTGGTCACGCCGGAGTCGAAGGACATGTGGTTACAGTGGACGGCTGAGAA
CTGCCAGCCAAACTTCTGGAAGAACGTTCACCCGGATCCCAAGGTCTCTT
GCGGCCCGTATAAGCCGCGGCCGACTCCGCTGACCCGCTGGAAGGAGGAC
CGTGCCCGCAATGAGTATGAGATCGGACGCAAGAACCACGATACCATCGG
CATGATCGCCATCGACGTGGAAAGCAACATCCACGCCGGCACCTCCACCA
ACGGGGCGCGGCACAAGATTCCCGGACGGGTCGGCGACTCCCCCATTTCG
GGTGCTGGCGCTTATGCAGACA

BO06849.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-PA 1182 CG1827-RA 1..856 17..872 4255 99.8 Plus
CG1827-PB 1011 CG1827-RB 1..685 188..872 3400 99.8 Plus
CG12928-PA 837 CG12928-RA 1..63 78..16 315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-RD 1341 CG1827-RD 100..956 16..872 4270 99.9 Plus
CG10474-RA 1273 CG10474-RA 256..419 374..537 235 77 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9589314..9590058 128..872 3710 99.9 Plus
2R 25286936 2R 9589149..9589262 16..129 570 100 Plus
2R 25286936 2R 19286249..19286412 537..374 235 76.2 Minus
Blast to na_te.dros performed on 2015-02-12 07:05:11 has no hits.

BO06849.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:27 Download gff for BO06849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:08 Download gff for BO06849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:03 Download gff for BO06849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 100..955 16..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:47 Download gff for BO06849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 100..955 16..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:47 Download gff for BO06849.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9589149..9589262 16..129 100 -> Plus
2R 9589316..9590057 130..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:03 Download gff for BO06849.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5476654..5476767 16..129 100 -> Plus
arm_2R 5476821..5477562 130..871 99   Plus

BO06849.complete Sequence

1213 bp (1213 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630563

> BO06849.complete
GAAGTTATCAGTCGACATGAGAAGGCACTTGCGGGCAAGTCTTTGGATCC
TTTGTTTGGCCACCATGGCGTTTTCCATCCTTGCGGCAGTAAATACTTCG
CCCAAACCAACGCTGACTTCGGCGTTTAGTGGAAAAGCTGGCACCACTGC
CGTGAAGGCGAATAAGACGACGGGTGAGCTGCTGCCCATGGTCATTAACA
CTTGGAACTTCACGGCTGCCAATGTGCTCGCCTGGCGAATCCTGAAGCAA
AGCAAGGGTGGACTCCGGCAGACGCGGAATGCGGTAGTGGAGGGCTGCTC
GAAGTGTGAGAAACTCCAGTGTGACCGAACGGTGGGCTATGGCGGATCGC
CGGACGAGTTGGGCGAAACCACACTGGATGCCATGGTCATGGACGGGGCC
ACCATGGATGTGGGGGCAGTGGCTGGTCTGCGACGCATTAAGGATGCCAT
TAAGGTAGCCCGGCATGTTCTGGAACACACGCAGCACACCATGCTGGTGG
GTGATGCGGCGTCAGCTTTCGCCAATGCTATGGGATTCGAATCAGAGTCG
CTGGTCACGCCGGAGTCGAAGGACATGTGGTTACAGTGGACGGCTGAGAA
CTGCCAGCCAAACTTCTGGAAGAACGTTCACCCGGATCCCAAGGTCTCTT
GCGGCCCGTATAAGCCGCGGCCGACTCCGCTGACCCGCTGGAAGGAGGAC
CGTGCCCGCAATGAGTATGAGATCGGACGCAAGAACCACGATACCATCGG
CATGATCGCCATCGACGTGGAAAGCAACATCCACGCCGGCACCTCCACCA
ACGGGGCGCGGCACAAGATTCCCGGACGGGTCGGCGACTCCCCCATTCCG
GGTGCTGGCGCTTATGCAGACAACGAGGTGGGTGCAGCCGTGGCAACCGG
AGATGGAGATGTGATGATGCGCTTCCTGCCCTCCCTGCTAGCGGTGGAGA
CCATGCGGGCGGGAAAACCTCCGGCTGAGGCAGCTCAAGAGGGCCTTCGC
CGCATTCTCAAGCACCACAAGGATTTCATGGGTGCTCTCATCGCCGTAGA
TCGGCTGGGTAATTATGGCGCTGCCTGCTACGGCCTGGCCGAATTCCCCT
TTATGGTTAGCAGTCCAGCCGGAGCGGATGGGCCTACGCGCTTGGAAACG
GTCAAATGCATAGGTGGTCAGGACAAAGTAAATATCGTGGCGTTGGCAAG
CTTTCTAGACCAT

BO06849.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-RD 1182 CG1827-PD 1..1179 17..1195 5895 100 Plus
CG10474-RA 1026 CG10474-PA 538..787 734..983 380 76.8 Plus
CG10474-RA 1026 CG10474-PA 187..350 374..537 235 76.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-RD 1341 CG1827-RD 100..1279 16..1195 5900 100 Plus
CG10474-RA 1273 CG10474-RA 607..856 734..983 380 76.8 Plus
CG10474-RA 1273 CG10474-RA 256..419 374..537 235 76.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9589314..9590381 128..1195 5340 100 Plus
2R 25286936 2R 9589149..9589262 16..129 570 100 Plus
2R 25286936 2R 19285812..19286061 983..734 380 76.8 Minus
2R 25286936 2R 19286249..19286412 537..374 235 76.2 Minus
Blast to na_te.dros performed on 2014-11-28 00:05:47 has no hits.

BO06849.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:32 Download gff for BO06849.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RC 1..1134 65..1198 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:16 Download gff for BO06849.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RC 44..1223 16..1195 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:27 Download gff for BO06849.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 101..1279 17..1197 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:32 Download gff for BO06849.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RC 44..1223 16..1195 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:24 Download gff for BO06849.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 101..1279 17..1197 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:24 Download gff for BO06849.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9589150..9589262 17..129 100 -> Plus
2R 9589316..9590381 130..1197 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:27 Download gff for BO06849.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5476655..5476767 17..129 100 -> Plus
arm_2R 5476821..5477886 130..1197 99   Plus

BO06849.pep Sequence

Translation from 16 to 1213

> BO06849.pep
MRRHLRASLWILCLATMAFSILAAVNTSPKPTLTSAFSGKAGTTAVKANK
TTGELLPMVINTWNFTAANVLAWRILKQSKGGLRQTRNAVVEGCSKCEKL
QCDRTVGYGGSPDELGETTLDAMVMDGATMDVGAVAGLRRIKDAIKVARH
VLEHTQHTMLVGDAASAFANAMGFESESLVTPESKDMWLQWTAENCQPNF
WKNVHPDPKVSCGPYKPRPTPLTRWKEDRARNEYEIGRKNHDTIGMIAID
VESNIHAGTSTNGARHKIPGRVGDSPIPGAGAYADNEVGAAVATGDGDVM
MRFLPSLLAVETMRAGKPPAEAAQEGLRRILKHHKDFMGALIAVDRLGNY
GAACYGLAEFPFMVSSPAGADGPTRLETVKCIGGQDKVNIVALASFLDH

BO06849.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-PD 393 CG1827-PD 1..393 1..393 2066 100 Plus
CG10474-PA 341 CG10474-PA 1..330 58..387 1013 59.3 Plus
CG4372-PA 397 CG4372-PA 7..378 13..388 817 42.6 Plus
CG7860-PB 332 CG7860-PB 34..296 72..351 263 29.4 Plus
CG7860-PA 332 CG7860-PA 34..296 72..351 263 29.4 Plus