Clone Sequence Records
BO06849.3prime Sequence
859 bp (783 high quality bases) assembled on 2005-12-03
> BO06849.3prime
ATGGTCTAGAAAGCTTGCCAACGCCACGATATTTACTTTGTCCTGACCAC
CTATGCATTTGACCGTTTCCAAGCGCGTAGGCCCATCCGCTCCGGCTGGA
CTGCTAACCATAAAGGGGAATTCGGCCAGGCCGTAGCAGGCAGCGCCATA
ATTACCCAGCCGATCTACGGCGATGAGAGCACCCATGAAATCCTTGTGGT
GCTTGAGAATGCGGCGAAGGCCCTCTTGAGCTGCCTCAGCCGGAGGTTTT
CCCGCCCGCATGGTCTCCACCGCTAGCAGGGAGGGCAGGAAGCGCATCAT
CACATCTCCATCTCCGGTTGCCACGGCTGCACCCACCTCGTTGTCTGCAT
AAGCGCCAGCACCCGGAATGGGGGAGTCGCCGACCCGTCCGGGAATCTTG
TGCCGCGCCCCGTTGGTGGAGGTGCCGGCGTGGATGTTGCTTTCCACGTC
GATGGCGATCATGCCGATGGTATCGTGGTTCTTGCGTCCGATCTCATACT
CATTGCGGGCACGGTCCTCCTTCCAGCGGGTCAGCGGAGTCGGCCGCGGC
TTATACGGGCCGCAAGAGACCTTGGGATCCGGGTGAACGTTCTTCCAGAA
GTTTGGCTGGCAGTTCTCAGCCGTCCACTGTAACCACATGTCCTTCGACT
CCGGCGTGACCAGCGACTCTGATTCGAATCCCATAGCATTGGCGAAAGCT
GACGCCGCATCACCCACCAGCATGGTGTGCTGCGTGTGTTCCAGAACATG
CCGGGCTACCTTAATGGCATCCTTAATGCGTCGCAGACCAGCCACTGCCC
GCACATCCATGGTGGCCCCGTCCATGACCATGGCATCCAGTGTGGTTTCG
CCCAACTCG
BO06849.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-PA | 1182 | CG1827-RA | 339..1179 | 859..19 | 4180 | 99.8 | Minus |
CG1827-PB | 1011 | CG1827-RB | 168..1008 | 859..19 | 4180 | 99.8 | Minus |
CG10474-PA | 1026 | CG10474-RA | 721..767 | 297..251 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-RD | 1341 | CG1827-RD | 439..1279 | 859..19 | 4190 | 99.9 | Minus |
CG10474-RA | 1273 | CG10474-RA | 607..856 | 480..231 | 380 | 76.8 | Minus |
CG10474-RA | 1273 | CG10474-RA | 256..419 | 840..677 | 220 | 76.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9589541..9590381 | 859..19 | 4190 | 99.9 | Minus |
2R | 25286936 | 2R | 19285812..19286061 | 231..480 | 380 | 76.8 | Plus |
2R | 25286936 | 2R | 19286249..19286412 | 677..840 | 220 | 75.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:35:32 has no hits.
BO06849.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:26 Download gff for
BO06849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-PA | 339..1182 | 16..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:07 Download gff for
BO06849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-PB | 168..1011 | 16..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:02:36 Download gff for
BO06849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RD | 439..1279 | 19..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:25 Download gff for
BO06849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RD | 439..1279 | 19..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:25 Download gff for
BO06849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9589541..9590381 | 19..859 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:02:36 Download gff for
BO06849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5477046..5477886 | 19..859 | 99 | | Minus |
BO06849.5prime Sequence
872 bp (818 high quality bases) assembled on 2005-12-03
> BO06849.5prime
GAAGTTATCAGTCGACATGAGAAGGCACTTGCGGGCAAGTCTTTGGATCC
TTTGTTTGGCCACCATGGCGTTTTCCATCCTTGCGGCAGTAAATACTTCG
CCCAAACCAACGCTGACTTCGGCGTTTAGTGGAAAAGCTGGCACCACTGC
CGTGAAGGCGAATAAGACGACGGGTGAGCTGCTGCCCATGGTCATTAACA
CTTGGAACTTCACGGCTGCCAATGTGCTCGCCTGGCGAATCCTGAAGCAA
AGCAAGGGTGGACTCCGGCAGACGCGGAATGCGGTAGTGGAGGGCTGCTC
GAAGTGTGAGAAACTCCAGTGTGACCGAACGGTGGGCTATGGCGGATCGC
CGGACGAGTTGGGCGAAACCACACTGGATGCCATGGTCATGGACGGGGCC
ACCATGGATGTGGGGGCAGTGGCTGGTCTGCGACGCATTAAGGATGCCAT
TAAGGTAGCCCGGCATGTTCTGGAACACACGCAGCACACCATGCTGGTGG
GTGATGCGGCGTCAGCTTTCGCCAATGCTATGGGATTCGAATCAGAGTCG
CTGGTCACGCCGGAGTCGAAGGACATGTGGTTACAGTGGACGGCTGAGAA
CTGCCAGCCAAACTTCTGGAAGAACGTTCACCCGGATCCCAAGGTCTCTT
GCGGCCCGTATAAGCCGCGGCCGACTCCGCTGACCCGCTGGAAGGAGGAC
CGTGCCCGCAATGAGTATGAGATCGGACGCAAGAACCACGATACCATCGG
CATGATCGCCATCGACGTGGAAAGCAACATCCACGCCGGCACCTCCACCA
ACGGGGCGCGGCACAAGATTCCCGGACGGGTCGGCGACTCCCCCATTTCG
GGTGCTGGCGCTTATGCAGACA
BO06849.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-PA | 1182 | CG1827-RA | 1..856 | 17..872 | 4255 | 99.8 | Plus |
CG1827-PB | 1011 | CG1827-RB | 1..685 | 188..872 | 3400 | 99.8 | Plus |
CG12928-PA | 837 | CG12928-RA | 1..63 | 78..16 | 315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-RD | 1341 | CG1827-RD | 100..956 | 16..872 | 4270 | 99.9 | Plus |
CG10474-RA | 1273 | CG10474-RA | 256..419 | 374..537 | 235 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9589314..9590058 | 128..872 | 3710 | 99.9 | Plus |
2R | 25286936 | 2R | 9589149..9589262 | 16..129 | 570 | 100 | Plus |
2R | 25286936 | 2R | 19286249..19286412 | 537..374 | 235 | 76.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:05:11 has no hits.
BO06849.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:27 Download gff for
BO06849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:08 Download gff for
BO06849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:03 Download gff for
BO06849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RD | 100..955 | 16..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:47 Download gff for
BO06849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RD | 100..955 | 16..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:47 Download gff for
BO06849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9589149..9589262 | 16..129 | 100 | -> | Plus |
2R | 9589316..9590057 | 130..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:03 Download gff for
BO06849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5476654..5476767 | 16..129 | 100 | -> | Plus |
arm_2R | 5476821..5477562 | 130..871 | 99 | | Plus |
BO06849.complete Sequence
1213 bp (1213 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630563
> BO06849.complete
GAAGTTATCAGTCGACATGAGAAGGCACTTGCGGGCAAGTCTTTGGATCC
TTTGTTTGGCCACCATGGCGTTTTCCATCCTTGCGGCAGTAAATACTTCG
CCCAAACCAACGCTGACTTCGGCGTTTAGTGGAAAAGCTGGCACCACTGC
CGTGAAGGCGAATAAGACGACGGGTGAGCTGCTGCCCATGGTCATTAACA
CTTGGAACTTCACGGCTGCCAATGTGCTCGCCTGGCGAATCCTGAAGCAA
AGCAAGGGTGGACTCCGGCAGACGCGGAATGCGGTAGTGGAGGGCTGCTC
GAAGTGTGAGAAACTCCAGTGTGACCGAACGGTGGGCTATGGCGGATCGC
CGGACGAGTTGGGCGAAACCACACTGGATGCCATGGTCATGGACGGGGCC
ACCATGGATGTGGGGGCAGTGGCTGGTCTGCGACGCATTAAGGATGCCAT
TAAGGTAGCCCGGCATGTTCTGGAACACACGCAGCACACCATGCTGGTGG
GTGATGCGGCGTCAGCTTTCGCCAATGCTATGGGATTCGAATCAGAGTCG
CTGGTCACGCCGGAGTCGAAGGACATGTGGTTACAGTGGACGGCTGAGAA
CTGCCAGCCAAACTTCTGGAAGAACGTTCACCCGGATCCCAAGGTCTCTT
GCGGCCCGTATAAGCCGCGGCCGACTCCGCTGACCCGCTGGAAGGAGGAC
CGTGCCCGCAATGAGTATGAGATCGGACGCAAGAACCACGATACCATCGG
CATGATCGCCATCGACGTGGAAAGCAACATCCACGCCGGCACCTCCACCA
ACGGGGCGCGGCACAAGATTCCCGGACGGGTCGGCGACTCCCCCATTCCG
GGTGCTGGCGCTTATGCAGACAACGAGGTGGGTGCAGCCGTGGCAACCGG
AGATGGAGATGTGATGATGCGCTTCCTGCCCTCCCTGCTAGCGGTGGAGA
CCATGCGGGCGGGAAAACCTCCGGCTGAGGCAGCTCAAGAGGGCCTTCGC
CGCATTCTCAAGCACCACAAGGATTTCATGGGTGCTCTCATCGCCGTAGA
TCGGCTGGGTAATTATGGCGCTGCCTGCTACGGCCTGGCCGAATTCCCCT
TTATGGTTAGCAGTCCAGCCGGAGCGGATGGGCCTACGCGCTTGGAAACG
GTCAAATGCATAGGTGGTCAGGACAAAGTAAATATCGTGGCGTTGGCAAG
CTTTCTAGACCAT
BO06849.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-RD | 1182 | CG1827-PD | 1..1179 | 17..1195 | 5895 | 100 | Plus |
CG10474-RA | 1026 | CG10474-PA | 538..787 | 734..983 | 380 | 76.8 | Plus |
CG10474-RA | 1026 | CG10474-PA | 187..350 | 374..537 | 235 | 76.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-RD | 1341 | CG1827-RD | 100..1279 | 16..1195 | 5900 | 100 | Plus |
CG10474-RA | 1273 | CG10474-RA | 607..856 | 734..983 | 380 | 76.8 | Plus |
CG10474-RA | 1273 | CG10474-RA | 256..419 | 374..537 | 235 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9589314..9590381 | 128..1195 | 5340 | 100 | Plus |
2R | 25286936 | 2R | 9589149..9589262 | 16..129 | 570 | 100 | Plus |
2R | 25286936 | 2R | 19285812..19286061 | 983..734 | 380 | 76.8 | Minus |
2R | 25286936 | 2R | 19286249..19286412 | 537..374 | 235 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:05:47 has no hits.
BO06849.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:32 Download gff for
BO06849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RC | 1..1134 | 65..1198 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:16 Download gff for
BO06849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RC | 44..1223 | 16..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:27 Download gff for
BO06849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RD | 101..1279 | 17..1197 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:32 Download gff for
BO06849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RC | 44..1223 | 16..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:24 Download gff for
BO06849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RD | 101..1279 | 17..1197 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:24 Download gff for
BO06849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9589150..9589262 | 17..129 | 100 | -> | Plus |
2R | 9589316..9590381 | 130..1197 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:27 Download gff for
BO06849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5476655..5476767 | 17..129 | 100 | -> | Plus |
arm_2R | 5476821..5477886 | 130..1197 | 99 | | Plus |
BO06849.pep Sequence
Translation from 16 to 1213
> BO06849.pep
MRRHLRASLWILCLATMAFSILAAVNTSPKPTLTSAFSGKAGTTAVKANK
TTGELLPMVINTWNFTAANVLAWRILKQSKGGLRQTRNAVVEGCSKCEKL
QCDRTVGYGGSPDELGETTLDAMVMDGATMDVGAVAGLRRIKDAIKVARH
VLEHTQHTMLVGDAASAFANAMGFESESLVTPESKDMWLQWTAENCQPNF
WKNVHPDPKVSCGPYKPRPTPLTRWKEDRARNEYEIGRKNHDTIGMIAID
VESNIHAGTSTNGARHKIPGRVGDSPIPGAGAYADNEVGAAVATGDGDVM
MRFLPSLLAVETMRAGKPPAEAAQEGLRRILKHHKDFMGALIAVDRLGNY
GAACYGLAEFPFMVSSPAGADGPTRLETVKCIGGQDKVNIVALASFLDH
BO06849.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-PD | 393 | CG1827-PD | 1..393 | 1..393 | 2066 | 100 | Plus |
CG10474-PA | 341 | CG10474-PA | 1..330 | 58..387 | 1013 | 59.3 | Plus |
CG4372-PA | 397 | CG4372-PA | 7..378 | 13..388 | 817 | 42.6 | Plus |
CG7860-PB | 332 | CG7860-PB | 34..296 | 72..351 | 263 | 29.4 | Plus |
CG7860-PA | 332 | CG7860-PA | 34..296 | 72..351 | 263 | 29.4 | Plus |