Clone BO06852 Report

Search the DGRC for BO06852

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG18316-RA
Protein status:BO06852.pep: validated full length
Sequenced Size:511

Clone Sequence Records

BO06852.3prime Sequence

509 bp (508 high quality bases) assembled on 2005-12-03

> BO06852.3prime
ATGGTCTAGAAAGCTTGCGGATAGAATAGCATTTAATGAATCGTCTAATG
CTATGTCTTCATCTGTGGGTCTCGTCGGAGGAGTCGGCTCCACTCGCAAC
TGCTCCATTTTCGTGTAGAACTTTGGGCACTTTTGAAGAACCTTGGAGTA
TTCCGTGAATATTTGAAAGGACGCCCTTTGGAGCAGCGTTTCTCCCATAT
GATTGGAGGCCAGTATTTTTGCCAAGTTCTTGTAGTCCCGCTGCATAAGG
CAATCCCGGGCCAGTCGTAGTTTCTCGTACGCAGTGGATCGTCGAACGCT
GAAGTAAAACTCGTTACTGGCCGGAGGAGCACAGGATGGGTTTTGGTTCA
CCCAAAAGCCATCTTCGGGACTGGTGGCGATCTCAAGCGTGCGTTTCAAA
ACATTTGCGGGTATCCTTCTGGCTGGAAAATTCTCACCCTTTATTTTACG
CGGTGCAGTTTTCAAAGGCGATGGCTTCTCATCTTTTGTTTTCATGTCGA
CTGATAACT

BO06852.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG18316-PA 480 CG18316-RA 1..477 495..19 2385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
udd-RA 989 CG18316-RA 72..548 495..19 2385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8106456..8106932 495..19 2385 100 Minus
Blast to na_te.dros performed 2015-02-13 01:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 935..971 246..210 113 78.4 Minus

BO06852.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:32 Download gff for BO06852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18316-PA 1..480 18..495 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:16 Download gff for BO06852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18316-PA 1..480 18..495 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:17 Download gff for BO06852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18316-RA 72..553 11..495 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:15:55 Download gff for BO06852.3prime
Subject Subject Range Query Range Percent Splice Strand
udd-RA 72..553 11..495 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:15:55 Download gff for BO06852.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8106456..8106937 11..495 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:17 Download gff for BO06852.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3993961..3994442 11..495 99   Minus

BO06852.5prime Sequence

509 bp (508 high quality bases) assembled on 2005-12-03

> BO06852.5prime
GAAGTTATCAGTCGACATGAAAACAAAAGATGAGAAGCCATCGCCTTTGA
AAACTGCACCGCGTAAAATAAAGGGTGAGAATTTTCCAGCCAGAAGGATA
CCCGCAAATGTTTTGAAACGCACGCTTGAGATCGCCACCAGTCCCGAAGA
TGGCTTTTGGGTGAACCAAAACCCATCCTGTGCTCCTCCGGCCAGTAACG
AGTTTTACTTCAGCGTTCGACGATCCACTGCGTACGAGAAACTACGACTG
GCCCGGGATTGCCTTATGCAGCGGGACTACAAGAACTTGGCAAAAATACT
GGCCTCCAATCATATGGGAGAAACGCTGCTCCAAAGGGCGTCCTTTCAAA
TATTCACGGAATACTCCAAGGTTCTTCAAAAGTGCCCAAAGTTCTACACG
AAAATGGAGCAGTTGCGAGTGGAGCCGACTCCTCCGACGAGACCCACAGA
TGAAGACATAGCATTAGACGATTCATTAAATGCTATTCTATCCGCAAGCT
TTCTAGACC

BO06852.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG18316-PA 480 CG18316-RA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
udd-RA 989 CG18316-RA 72..548 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8106456..8106932 17..493 2385 100 Plus
Blast to na_te.dros performed 2015-02-12 15:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 935..971 266..302 113 78.4 Plus

BO06852.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:33 Download gff for BO06852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18316-PA 1..480 17..494 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:17 Download gff for BO06852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18316-PA 1..480 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:58 Download gff for BO06852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18316-RA 72..553 17..501 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:13 Download gff for BO06852.5prime
Subject Subject Range Query Range Percent Splice Strand
udd-RA 72..553 17..501 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:13 Download gff for BO06852.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8106456..8106937 17..501 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:58 Download gff for BO06852.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3993961..3994442 17..501 99   Plus

BO06852.complete Sequence

511 bp (511 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630564

> BO06852.complete
GAAGTTATCAGTCGACATGAAAACAAAAGATGAGAAGCCATCGCCTTTGA
AAACTGCACCGCGTAAAATAAAGGGTGAGAATTTTCCAGCCAGAAGGATA
CCCGCAAATGTTTTGAAACGCACGCTTGAGATCGCCACCAGTCCCGAAGA
TGGCTTTTGGGTGAACCAAAACCCATCCTGTGCTCCTCCGGCCAGTAACG
AGTTTTACTTCAGCGTTCGACGATCCACTGCGTACGAGAAACTACGACTG
GCCCGGGATTGCCTTATGCAGCGGGACTACAAGAACTTGGCAAAAATACT
GGCCTCCAATCATATGGGAGAAACGCTGCTCCAAAGGGCGTCCTTTCAAA
TATTCACGGAATACTCCAAGGTTCTTCAAAAGTGCCCAAAGTTCTACACG
AAAATGGAGCAGTTGCGAGTGGAGCCGACTCCTCCGACGAGACCCACAGA
TGAAGACATAGCATTAGACGATTCATTAAATGCTATTCTATCCGCAAGCT
TTCTAGACCAT

BO06852.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
udd-RA 480 CG18316-PA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
udd-RA 989 CG18316-RA 72..548 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8106456..8106932 17..493 2385 100 Plus
Blast to na_te.dros performed 2014-11-27 13:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 935..971 266..302 113 78.4 Plus

BO06852.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:32:07 Download gff for BO06852.complete
Subject Subject Range Query Range Percent Splice Strand
CG18316-RA 1..480 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:43 Download gff for BO06852.complete
Subject Subject Range Query Range Percent Splice Strand
CG18316-RA 31..512 17..501 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:13:49 Download gff for BO06852.complete
Subject Subject Range Query Range Percent Splice Strand
CG18316-RA 72..548 17..495 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:32:08 Download gff for BO06852.complete
Subject Subject Range Query Range Percent Splice Strand
CG18316-RA 31..512 17..501 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:05 Download gff for BO06852.complete
Subject Subject Range Query Range Percent Splice Strand
udd-RA 72..548 17..495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:05 Download gff for BO06852.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8106456..8106932 17..495 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:13:49 Download gff for BO06852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3993961..3994437 17..495 99   Plus

BO06852.pep Sequence

Translation from 16 to 511

> BO06852.pep
MKTKDEKPSPLKTAPRKIKGENFPARRIPANVLKRTLEIATSPEDGFWVN
QNPSCAPPASNEFYFSVRRSTAYEKLRLARDCLMQRDYKNLAKILASNHM
GETLLQRASFQIFTEYSKVLQKCPKFYTKMEQLRVEPTPPTRPTDEDIAL
DDSLNAILSASFLDH

BO06852.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
udd-PA 159 CG18316-PA 1..159 1..159 829 100 Plus