Clone Sequence Records
BO06852.3prime Sequence
509 bp (508 high quality bases) assembled on 2005-12-03
> BO06852.3prime
ATGGTCTAGAAAGCTTGCGGATAGAATAGCATTTAATGAATCGTCTAATG
CTATGTCTTCATCTGTGGGTCTCGTCGGAGGAGTCGGCTCCACTCGCAAC
TGCTCCATTTTCGTGTAGAACTTTGGGCACTTTTGAAGAACCTTGGAGTA
TTCCGTGAATATTTGAAAGGACGCCCTTTGGAGCAGCGTTTCTCCCATAT
GATTGGAGGCCAGTATTTTTGCCAAGTTCTTGTAGTCCCGCTGCATAAGG
CAATCCCGGGCCAGTCGTAGTTTCTCGTACGCAGTGGATCGTCGAACGCT
GAAGTAAAACTCGTTACTGGCCGGAGGAGCACAGGATGGGTTTTGGTTCA
CCCAAAAGCCATCTTCGGGACTGGTGGCGATCTCAAGCGTGCGTTTCAAA
ACATTTGCGGGTATCCTTCTGGCTGGAAAATTCTCACCCTTTATTTTACG
CGGTGCAGTTTTCAAAGGCGATGGCTTCTCATCTTTTGTTTTCATGTCGA
CTGATAACT
BO06852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18316-PA | 480 | CG18316-RA | 1..477 | 495..19 | 2385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
udd-RA | 989 | CG18316-RA | 72..548 | 495..19 | 2385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:23:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8106456..8106932 | 495..19 | 2385 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 01:23:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 935..971 | 246..210 | 113 | 78.4 | Minus |
BO06852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:32 Download gff for
BO06852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18316-PA | 1..480 | 18..495 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:16 Download gff for
BO06852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18316-PA | 1..480 | 18..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:30:17 Download gff for
BO06852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18316-RA | 72..553 | 11..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:15:55 Download gff for
BO06852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
udd-RA | 72..553 | 11..495 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:15:55 Download gff for
BO06852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8106456..8106937 | 11..495 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:30:17 Download gff for
BO06852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3993961..3994442 | 11..495 | 99 | | Minus |
BO06852.5prime Sequence
509 bp (508 high quality bases) assembled on 2005-12-03
> BO06852.5prime
GAAGTTATCAGTCGACATGAAAACAAAAGATGAGAAGCCATCGCCTTTGA
AAACTGCACCGCGTAAAATAAAGGGTGAGAATTTTCCAGCCAGAAGGATA
CCCGCAAATGTTTTGAAACGCACGCTTGAGATCGCCACCAGTCCCGAAGA
TGGCTTTTGGGTGAACCAAAACCCATCCTGTGCTCCTCCGGCCAGTAACG
AGTTTTACTTCAGCGTTCGACGATCCACTGCGTACGAGAAACTACGACTG
GCCCGGGATTGCCTTATGCAGCGGGACTACAAGAACTTGGCAAAAATACT
GGCCTCCAATCATATGGGAGAAACGCTGCTCCAAAGGGCGTCCTTTCAAA
TATTCACGGAATACTCCAAGGTTCTTCAAAAGTGCCCAAAGTTCTACACG
AAAATGGAGCAGTTGCGAGTGGAGCCGACTCCTCCGACGAGACCCACAGA
TGAAGACATAGCATTAGACGATTCATTAAATGCTATTCTATCCGCAAGCT
TTCTAGACC
BO06852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18316-PA | 480 | CG18316-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
udd-RA | 989 | CG18316-RA | 72..548 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8106456..8106932 | 17..493 | 2385 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 15:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 935..971 | 266..302 | 113 | 78.4 | Plus |
BO06852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:33 Download gff for
BO06852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18316-PA | 1..480 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:17 Download gff for
BO06852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18316-PA | 1..480 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:14:58 Download gff for
BO06852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18316-RA | 72..553 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:13 Download gff for
BO06852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
udd-RA | 72..553 | 17..501 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:13 Download gff for
BO06852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8106456..8106937 | 17..501 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:14:58 Download gff for
BO06852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3993961..3994442 | 17..501 | 99 | | Plus |
BO06852.complete Sequence
511 bp (511 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630564
> BO06852.complete
GAAGTTATCAGTCGACATGAAAACAAAAGATGAGAAGCCATCGCCTTTGA
AAACTGCACCGCGTAAAATAAAGGGTGAGAATTTTCCAGCCAGAAGGATA
CCCGCAAATGTTTTGAAACGCACGCTTGAGATCGCCACCAGTCCCGAAGA
TGGCTTTTGGGTGAACCAAAACCCATCCTGTGCTCCTCCGGCCAGTAACG
AGTTTTACTTCAGCGTTCGACGATCCACTGCGTACGAGAAACTACGACTG
GCCCGGGATTGCCTTATGCAGCGGGACTACAAGAACTTGGCAAAAATACT
GGCCTCCAATCATATGGGAGAAACGCTGCTCCAAAGGGCGTCCTTTCAAA
TATTCACGGAATACTCCAAGGTTCTTCAAAAGTGCCCAAAGTTCTACACG
AAAATGGAGCAGTTGCGAGTGGAGCCGACTCCTCCGACGAGACCCACAGA
TGAAGACATAGCATTAGACGATTCATTAAATGCTATTCTATCCGCAAGCT
TTCTAGACCAT
BO06852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
udd-RA | 480 | CG18316-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
udd-RA | 989 | CG18316-RA | 72..548 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8106456..8106932 | 17..493 | 2385 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 935..971 | 266..302 | 113 | 78.4 | Plus |
BO06852.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:32:07 Download gff for
BO06852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18316-RA | 1..480 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:43 Download gff for
BO06852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18316-RA | 31..512 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:13:49 Download gff for
BO06852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18316-RA | 72..548 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:32:08 Download gff for
BO06852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18316-RA | 31..512 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:05 Download gff for
BO06852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
udd-RA | 72..548 | 17..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:05 Download gff for
BO06852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8106456..8106932 | 17..495 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:13:49 Download gff for
BO06852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3993961..3994437 | 17..495 | 99 | | Plus |
BO06852.pep Sequence
Translation from 16 to 511
> BO06852.pep
MKTKDEKPSPLKTAPRKIKGENFPARRIPANVLKRTLEIATSPEDGFWVN
QNPSCAPPASNEFYFSVRRSTAYEKLRLARDCLMQRDYKNLAKILASNHM
GETLLQRASFQIFTEYSKVLQKCPKFYTKMEQLRVEPTPPTRPTDEDIAL
DDSLNAILSASFLDH
BO06852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
udd-PA | 159 | CG18316-PA | 1..159 | 1..159 | 829 | 100 | Plus |