Clone Sequence Records
BO06854.5prime Sequence
642 bp (641 high quality bases) assembled on 2005-12-03
> BO06854.5prime
GAAGTTATCAGTCGACATGAATAAAATTACGAGTGCCTTCATAAGAGTTC
TGCGCCAGAGCAGCTCCTCAGGCGGCACAGGCAACCTTCTGGGTCGTCAG
CTCTCCTACAAGAGCGATTTATCCCTGGACAAGATCTATCCCGGCGCCCG
ACTGCAAATCTACACGCCGCCCCCGCCGCCCAGTGGCAGCGACAAGTTCA
GCGGCTTCATTCCCATGGACCGACTGGAGATCACCTACAGCAGGAGCTCC
GGACCCGGTGGTCAGCACGTGAACACGGTGAATACCAAGGTGGATGTACG
CTTCAAGGTGGCACAAGCGGACTGGATACCCGAGCAGACGCGCCAGAAGC
TGCTCAAGGTGCTGGCAAACCGGATTACCAAAGACGGCTACTTTTACATC
AAGAGTGATCTTACGCGCTCCCAGCAAATGAACCTGGCCGATGCGCTGGA
GAAGCTGCGCACCATCATACGCTCCCAGGAGGCTGTGGCACCTGCGCCAC
CCAGCGAGGAGACACTGGAGAAGCTGCGCAGGCGCCAGGAGCGAGCGGTC
CGCGAACGTCTACAACTGAAACGTGGTCGCGCCCAAGTCAAAGCGGATCG
GCAGGGACCGAGCGGATTAGACTTGGCAAGCTTTTCTAGACC
BO06854.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6094-PA | 612 | CG6094-RA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6094-RB | 889 | CG6094-RB | 114..722 | 17..625 | 3045 | 100 | Plus |
CG6094-RA | 735 | CG6094-RA | 74..682 | 17..625 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10507418..10507865 | 178..625 | 2240 | 100 | Plus |
2L | 23513712 | 2L | 10507194..10507355 | 17..178 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:05:32 has no hits.
BO06854.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:37 Download gff for
BO06854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-PA | 1..612 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:23 Download gff for
BO06854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-PA | 1..612 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:45:44 Download gff for
BO06854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 68..689 | 9..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:40 Download gff for
BO06854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 68..689 | 9..635 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:40 Download gff for
BO06854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10507188..10507355 | 9..178 | 97 | -> | Plus |
2L | 10507419..10507872 | 179..635 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:45:44 Download gff for
BO06854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10507188..10507355 | 9..178 | 97 | -> | Plus |
arm_2L | 10507419..10507872 | 179..635 | 99 | | Plus |
BO06854.3prime Sequence
642 bp (641 high quality bases) assembled on 2005-12-03
> BO06854.3prime
ATGGTCTAGAAAAGCTTGCCAAGTCTAATCCGCTCGGTCCCTGCCGATCC
GCTTTGACTTGGGCGCGACCACGTTTCAGTTGTAGACGTTCGCGGACCGC
TCGCTCCTGGCGCCTGCGCAGCTTCTCCAGTGTCTCCTCGCTGGGTGGCG
CAGGTGCCACAGCCTCCTGGGAGCGTATGATGGTGCGCAGCTTCTCCAGC
GCATCGGCCAGGTTCATTTGCTGGGAGCGCGTAAGATCACTCTTGATGTA
AAAGTAGCCGTCTTTGGTAATCCGGTTTGCCAGCACCTTGAGCAGCTTCT
GGCGCGTCTGCTCGGGTATCCAGTCCGCTTGTGCCACCTTGAAGCGTACA
TCCACCTTGGTATTCACCGTGTTCACGTGCTGACCACCGGGTCCGGAGCT
CCTGCTGTAGGTGATCTCCAGTCGGTCCATGGGAATGAAGCCGCTGAACT
TGTCGCTGCCACTGGGCGGCGGGGGCGGCGTGTAGATTTGCAGTCGGGCG
CCGGGATAGATCTTGTCCAGGGATAAATCGCTCTTGTAGGAGAGCTGACG
ACCCAGAAGGTTGCCTGTGCCGCCTGAGGAGCTGCTCTGGCGCAGAACTC
TTATGAAGGCACTCGTAATTTTATTCATGTCGACTGATAACT
BO06854.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6094-PA | 612 | CG6094-RA | 1..609 | 628..20 | 3045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6094-RB | 889 | CG6094-RB | 114..722 | 628..20 | 3045 | 100 | Minus |
CG6094-RA | 735 | CG6094-RA | 74..682 | 628..20 | 3045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10507418..10507865 | 467..20 | 2240 | 100 | Minus |
2L | 23513712 | 2L | 10507194..10507355 | 628..467 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:51:04 has no hits.
BO06854.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:36 Download gff for
BO06854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-PA | 1..612 | 19..628 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:22 Download gff for
BO06854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-PA | 1..612 | 19..628 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:26 Download gff for
BO06854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 68..689 | 10..636 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:50:22 Download gff for
BO06854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 68..689 | 10..636 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:50:22 Download gff for
BO06854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10507188..10507355 | 467..636 | 97 | -> | Minus |
2L | 10507419..10507872 | 10..466 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:26 Download gff for
BO06854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10507188..10507355 | 467..636 | 97 | -> | Minus |
arm_2L | 10507419..10507872 | 10..466 | 99 | | Minus |
BO06854.complete Sequence
644 bp assembled on 2011-06-28
> BO06854.complete
GAAGTTATCAGTCGACATGAATAAAATTACGAGTGCCTTCATAAGAGTTC
TGCGCCAGAGCAGCTCCTCAGGCGGCACAGGCAACCTTCTGGGTCGTCAG
CTCTCCTACAAGAGCGATTTATCCCTGGACAAGATCTATCCCGGCGCCCG
ACTGCAAATCTACACGCCGCCCCCGCCGCCCAGTGGCAGCGACAAGTTCA
GCGGCTTCATTCCCATGGACCGACTGGAGATCACCTACAGCAGGAGCTCC
GGACCCGGTGGTCAGCACGTGAACACGGTGAATACCAAGGTGGATGTACG
CTTCAAGGTGGCACAAGCGGACTGGATACCCGAGCAGACGCGCCAGAAGC
TGCTCAAGGTGCTGGCAAACCGGATTACCAAAGACGGCTACTTTTACATC
AAGAGTGATCTTACGCGCTCCCAGCAAATGAACCTGGCCGATGCGCTGGA
GAAGCTGCGCACCATCATACGCTCCCAGGAGGCTGTGGCACCTGCGCCAC
CCAGCGAGGAGACACTGGAGAAGCTGCGCAGGCGCCAGGAGCGAGCGGTC
CGCGAACGTCTACAACTGAAACGTGGTCGCGCCCAAGTCAAAGCGGATCG
GCAGGGACCGAGCGGATTAGACTTGGCAAGCTTTTCTAGACCAT
BO06854.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6094-RB | 612 | CG6094-PB | 1..609 | 17..625 | 3045 | 100 | Plus |
CG6094-RA | 612 | CG6094-PA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6094-RB | 889 | CG6094-RB | 114..722 | 17..625 | 3045 | 100 | Plus |
CG6094-RA | 735 | CG6094-RA | 74..682 | 17..625 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10507418..10507865 | 178..625 | 2240 | 100 | Plus |
2L | 23513712 | 2L | 10507194..10507355 | 17..178 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:21:07 has no hits.
BO06854.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:36 Download gff for
BO06854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 78..686 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:37 Download gff for
BO06854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 74..682 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:02 Download gff for
BO06854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6094-RA | 74..682 | 17..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:02 Download gff for
BO06854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10507194..10507355 | 17..178 | 100 | -> | Plus |
2L | 10507419..10507865 | 179..627 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:37 Download gff for
BO06854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10507194..10507355 | 17..178 | 100 | -> | Plus |
arm_2L | 10507419..10507865 | 179..627 | 99 | | Plus |
BO06854.pep Sequence
Translation from 16 to 643
> BO06854.pep
MNKITSAFIRVLRQSSSSGGTGNLLGRQLSYKSDLSLDKIYPGARLQIYT
PPPPPSGSDKFSGFIPMDRLEITYSRSSGPGGQHVNTVNTKVDVRFKVAQ
ADWIPEQTRQKLLKVLANRITKDGYFYIKSDLTRSQQMNLADALEKLRTI
IRSQEAVAPAPPSEETLEKLRRRQERAVRERLQLKRGRAQVKADRQGPSG
LDLASFSRP
BO06854.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6094-PB | 203 | CG6094-PB | 1..203 | 1..203 | 1024 | 100 | Plus |
CG6094-PA | 203 | CG6094-PA | 1..203 | 1..203 | 1024 | 100 | Plus |