Clone BO06854 Report

Search the DGRC for BO06854

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG6094-RA
Protein status:BO06854.pep: Imported from assembly
Sequenced Size:644

Clone Sequence Records

BO06854.5prime Sequence

642 bp (641 high quality bases) assembled on 2005-12-03

> BO06854.5prime
GAAGTTATCAGTCGACATGAATAAAATTACGAGTGCCTTCATAAGAGTTC
TGCGCCAGAGCAGCTCCTCAGGCGGCACAGGCAACCTTCTGGGTCGTCAG
CTCTCCTACAAGAGCGATTTATCCCTGGACAAGATCTATCCCGGCGCCCG
ACTGCAAATCTACACGCCGCCCCCGCCGCCCAGTGGCAGCGACAAGTTCA
GCGGCTTCATTCCCATGGACCGACTGGAGATCACCTACAGCAGGAGCTCC
GGACCCGGTGGTCAGCACGTGAACACGGTGAATACCAAGGTGGATGTACG
CTTCAAGGTGGCACAAGCGGACTGGATACCCGAGCAGACGCGCCAGAAGC
TGCTCAAGGTGCTGGCAAACCGGATTACCAAAGACGGCTACTTTTACATC
AAGAGTGATCTTACGCGCTCCCAGCAAATGAACCTGGCCGATGCGCTGGA
GAAGCTGCGCACCATCATACGCTCCCAGGAGGCTGTGGCACCTGCGCCAC
CCAGCGAGGAGACACTGGAGAAGCTGCGCAGGCGCCAGGAGCGAGCGGTC
CGCGAACGTCTACAACTGAAACGTGGTCGCGCCCAAGTCAAAGCGGATCG
GCAGGGACCGAGCGGATTAGACTTGGCAAGCTTTTCTAGACC

BO06854.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-PA 612 CG6094-RA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-RB 889 CG6094-RB 114..722 17..625 3045 100 Plus
CG6094-RA 735 CG6094-RA 74..682 17..625 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10507418..10507865 178..625 2240 100 Plus
2L 23513712 2L 10507194..10507355 17..178 810 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:05:32 has no hits.

BO06854.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:37 Download gff for BO06854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-PA 1..612 17..626 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:23 Download gff for BO06854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-PA 1..612 17..626 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:45:44 Download gff for BO06854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 68..689 9..635 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:40 Download gff for BO06854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 68..689 9..635 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:40 Download gff for BO06854.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10507188..10507355 9..178 97 -> Plus
2L 10507419..10507872 179..635 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:45:44 Download gff for BO06854.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10507188..10507355 9..178 97 -> Plus
arm_2L 10507419..10507872 179..635 99   Plus

BO06854.3prime Sequence

642 bp (641 high quality bases) assembled on 2005-12-03

> BO06854.3prime
ATGGTCTAGAAAAGCTTGCCAAGTCTAATCCGCTCGGTCCCTGCCGATCC
GCTTTGACTTGGGCGCGACCACGTTTCAGTTGTAGACGTTCGCGGACCGC
TCGCTCCTGGCGCCTGCGCAGCTTCTCCAGTGTCTCCTCGCTGGGTGGCG
CAGGTGCCACAGCCTCCTGGGAGCGTATGATGGTGCGCAGCTTCTCCAGC
GCATCGGCCAGGTTCATTTGCTGGGAGCGCGTAAGATCACTCTTGATGTA
AAAGTAGCCGTCTTTGGTAATCCGGTTTGCCAGCACCTTGAGCAGCTTCT
GGCGCGTCTGCTCGGGTATCCAGTCCGCTTGTGCCACCTTGAAGCGTACA
TCCACCTTGGTATTCACCGTGTTCACGTGCTGACCACCGGGTCCGGAGCT
CCTGCTGTAGGTGATCTCCAGTCGGTCCATGGGAATGAAGCCGCTGAACT
TGTCGCTGCCACTGGGCGGCGGGGGCGGCGTGTAGATTTGCAGTCGGGCG
CCGGGATAGATCTTGTCCAGGGATAAATCGCTCTTGTAGGAGAGCTGACG
ACCCAGAAGGTTGCCTGTGCCGCCTGAGGAGCTGCTCTGGCGCAGAACTC
TTATGAAGGCACTCGTAATTTTATTCATGTCGACTGATAACT

BO06854.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-PA 612 CG6094-RA 1..609 628..20 3045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-RB 889 CG6094-RB 114..722 628..20 3045 100 Minus
CG6094-RA 735 CG6094-RA 74..682 628..20 3045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10507418..10507865 467..20 2240 100 Minus
2L 23513712 2L 10507194..10507355 628..467 810 100 Minus
Blast to na_te.dros performed on 2015-02-12 09:51:04 has no hits.

BO06854.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:36 Download gff for BO06854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-PA 1..612 19..628 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:22 Download gff for BO06854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-PA 1..612 19..628 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:26 Download gff for BO06854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 68..689 10..636 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:50:22 Download gff for BO06854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 68..689 10..636 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:50:22 Download gff for BO06854.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10507188..10507355 467..636 97 -> Minus
2L 10507419..10507872 10..466 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:26 Download gff for BO06854.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10507188..10507355 467..636 97 -> Minus
arm_2L 10507419..10507872 10..466 99   Minus

BO06854.complete Sequence

644 bp assembled on 2011-06-28

> BO06854.complete
GAAGTTATCAGTCGACATGAATAAAATTACGAGTGCCTTCATAAGAGTTC
TGCGCCAGAGCAGCTCCTCAGGCGGCACAGGCAACCTTCTGGGTCGTCAG
CTCTCCTACAAGAGCGATTTATCCCTGGACAAGATCTATCCCGGCGCCCG
ACTGCAAATCTACACGCCGCCCCCGCCGCCCAGTGGCAGCGACAAGTTCA
GCGGCTTCATTCCCATGGACCGACTGGAGATCACCTACAGCAGGAGCTCC
GGACCCGGTGGTCAGCACGTGAACACGGTGAATACCAAGGTGGATGTACG
CTTCAAGGTGGCACAAGCGGACTGGATACCCGAGCAGACGCGCCAGAAGC
TGCTCAAGGTGCTGGCAAACCGGATTACCAAAGACGGCTACTTTTACATC
AAGAGTGATCTTACGCGCTCCCAGCAAATGAACCTGGCCGATGCGCTGGA
GAAGCTGCGCACCATCATACGCTCCCAGGAGGCTGTGGCACCTGCGCCAC
CCAGCGAGGAGACACTGGAGAAGCTGCGCAGGCGCCAGGAGCGAGCGGTC
CGCGAACGTCTACAACTGAAACGTGGTCGCGCCCAAGTCAAAGCGGATCG
GCAGGGACCGAGCGGATTAGACTTGGCAAGCTTTTCTAGACCAT

BO06854.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-RB 612 CG6094-PB 1..609 17..625 3045 100 Plus
CG6094-RA 612 CG6094-PA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-RB 889 CG6094-RB 114..722 17..625 3045 100 Plus
CG6094-RA 735 CG6094-RA 74..682 17..625 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10507418..10507865 178..625 2240 100 Plus
2L 23513712 2L 10507194..10507355 17..178 810 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:21:07 has no hits.

BO06854.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:36 Download gff for BO06854.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 78..686 17..627 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:37 Download gff for BO06854.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 74..682 17..627 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:02 Download gff for BO06854.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 74..682 17..627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:02 Download gff for BO06854.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10507194..10507355 17..178 100 -> Plus
2L 10507419..10507865 179..627 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:37 Download gff for BO06854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10507194..10507355 17..178 100 -> Plus
arm_2L 10507419..10507865 179..627 99   Plus

BO06854.pep Sequence

Translation from 16 to 643

> BO06854.pep
MNKITSAFIRVLRQSSSSGGTGNLLGRQLSYKSDLSLDKIYPGARLQIYT
PPPPPSGSDKFSGFIPMDRLEITYSRSSGPGGQHVNTVNTKVDVRFKVAQ
ADWIPEQTRQKLLKVLANRITKDGYFYIKSDLTRSQQMNLADALEKLRTI
IRSQEAVAPAPPSEETLEKLRRRQERAVRERLQLKRGRAQVKADRQGPSG
LDLASFSRP

BO06854.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-PB 203 CG6094-PB 1..203 1..203 1024 100 Plus
CG6094-PA 203 CG6094-PA 1..203 1..203 1024 100 Plus