Clone BO06860 Report

Search the DGRC for BO06860

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptRpS23-RA
Protein status:BO06860.pep: validated full length
Sequenced Size:463

Clone Sequence Records

BO06860.5prime Sequence

461 bp (460 high quality bases) assembled on 2005-12-03

> BO06860.5prime
GAAGTTATCAGTCGACATGGGCAAGCCAAGAGGTCTGCGCACTGCCAGGA
AGCATGTGAACCACCGTCGCGACCAGCGTTGGGCCGACAAGGACTACAAG
AAGGCTCATTTGGGCACCAGATGGAAGGCTAATCCCTTCGGAGGTGCTTC
CCACGCCAAGGGAATCGTCCTGGAGAAGGTCGGCGTCGAGGCCAAGCAGC
CTAACTCTGCCATCCGCAAGTGCGTGAGGGTGCAGCTCATCAAGAACGGC
AAGAAGATCACCGCCTTCGTGCCCCGTGACGGTAGCTTGAACTACATTGA
GGAGAACGACGAGGTCCTGGTTGCCGGTTTCGGTCGTAAGGGTCATGCCG
TCGGTGATATTCCCGGTGTGCGCTTCAAGGTTGTCAAGGTCGCCAACGTC
TCCCTGTTGGCCCTCTACAAGGAGAAGAAGGAACGCCCAAGATCTGCAAG
CTTTCTAGACC

BO06860.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8415-PA 432 RpS23-RA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
RpS23-RA 865 CG8415-RA 95..523 17..445 2145 100 Plus
RpS23-RB 553 CG8415-RB 46..474 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14215438..14215702 445..181 1325 100 Minus
2R 25286936 2R 14215951..14216111 180..20 805 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:13:07 has no hits.

BO06860.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:49 Download gff for BO06860.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS23-PA 1..432 17..446 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:40 Download gff for BO06860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8415-PA 1..432 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:18 Download gff for BO06860.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS23-RB 46..474 17..445 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:50 Download gff for BO06860.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS23-RB 46..474 17..445 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:50 Download gff for BO06860.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14215438..14215702 181..445 100 <- Minus
2R 14215951..14216114 15..180 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:18 Download gff for BO06860.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10102943..10103207 181..445 100 <- Minus
arm_2R 10103456..10103619 15..180 98   Minus

BO06860.3prime Sequence

461 bp (460 high quality bases) assembled on 2005-12-03

> BO06860.3prime
ATGGTCTAGAAAGCTTGCAGATCTTGGGCGTTCCTTCTTCTCCTTGTAGA
GGGCCAACAGGGAGACGTTGGCGACCTTGACAACCTTGAAGCGCACACCG
GGAATATCACCGACGGCATGACCCTTACGACCGAAACCGGCAACCAGGAC
CTCGTCGTTCTCCTCAATGTAGTTCAAGCTACCGTCACGGGGCACGAAGG
CGGTGATCTTCTTGCCGTTCTTGATGAGCTGCACCCTCACGCACTTGCGG
ATGGCAGAGTTAGGCTGCTTGGCCTCGACGCCGACCTTCTCCAGGACGAT
TCCCTTGGCGTGGGAAGCACCTCCGAAGGGATTAGCCTTCCATCTGGTGC
CCAAATGAGCCTTCTTGTAGTCCTTGTCGGCCCAACGCTGGTCGCGACGG
TGGTTCACATGCTTCCTGGCAGTGCGCAGACCTCTTGGCTTGCCCATGTC
GACTGATAACT

BO06860.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8415-PA 432 RpS23-RA 1..429 447..19 2145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
RpS23-RA 865 CG8415-RA 95..523 447..19 2145 100 Minus
RpS23-RB 553 CG8415-RB 46..474 447..19 2145 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14215438..14215702 19..283 1325 100 Plus
2R 25286936 2R 14215951..14216111 284..444 805 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:44:20 has no hits.

BO06860.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:48 Download gff for BO06860.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS23-PA 1..432 18..447 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:38 Download gff for BO06860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8415-PA 1..432 18..447 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:02:49 Download gff for BO06860.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS23-RB 46..474 19..447 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:26 Download gff for BO06860.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS23-RB 46..474 19..447 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:26 Download gff for BO06860.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14215438..14215702 19..283 100 <- Plus
2R 14215951..14216114 284..449 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:02:49 Download gff for BO06860.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10102943..10103207 19..283 100 <- Plus
arm_2R 10103456..10103619 284..449 98   Plus

BO06860.complete Sequence

463 bp (463 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630565

> BO06860.complete
GAAGTTATCAGTCGACATGGGCAAGCCAAGAGGTCTGCGCACTGCCAGGA
AGCATGTGAACCACCGTCGCGACCAGCGTTGGGCCGACAAGGACTACAAG
AAGGCTCATTTGGGCACCAGATGGAAGGCTAATCCCTTCGGAGGTGCTTC
CCACGCCAAGGGAATCGTCCTGGAGAAGGTCGGCGTCGAGGCCAAGCAGC
CTAACTCTGCCATCCGCAAGTGCGTGAGGGTGCAGCTCATCAAGAACGGC
AAGAAGATCACCGCCTTCGTGCCCCGTGACGGTAGCTTGAACTACATTGA
GGAGAACGACGAGGTCCTGGTTGCCGGTTTCGGTCGTAAGGGTCATGCCG
TCGGTGATATTCCCGGTGTGCGCTTCAAGGTTGTCAAGGTCGCCAACGTC
TCCCTGTTGGCCCTCTACAAGGAGAAGAAGGAACGCCCAAGATCTGCAAG
CTTTCTAGACCAT

BO06860.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
RpS23-RA 432 CG8415-PA 1..429 17..445 2145 100 Plus
RpS23-RB 432 CG8415-PB 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
RpS23-RA 865 CG8415-RA 95..523 17..445 2145 100 Plus
RpS23-RB 553 CG8415-RB 46..474 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14215438..14215702 445..181 1325 100 Minus
2R 25286936 2R 14215951..14216111 180..20 805 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:29:19 has no hits.

BO06860.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:15 Download gff for BO06860.complete
Subject Subject Range Query Range Percent Splice Strand
RpS23-RA 1..432 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:17 Download gff for BO06860.complete
Subject Subject Range Query Range Percent Splice Strand
RpS23-RA 95..523 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:34 Download gff for BO06860.complete
Subject Subject Range Query Range Percent Splice Strand
RpS23-RB 46..474 17..447 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:16 Download gff for BO06860.complete
Subject Subject Range Query Range Percent Splice Strand
RpS23-RA 95..523 17..445 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:47 Download gff for BO06860.complete
Subject Subject Range Query Range Percent Splice Strand
RpS23-RB 46..474 17..447 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:47 Download gff for BO06860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14215436..14215702 181..447 99 <- Minus
2R 14215951..14216112 17..180 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:34 Download gff for BO06860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10102941..10103207 181..447 99 <- Minus
arm_2R 10103456..10103617 17..180 98   Minus

BO06860.pep Sequence

Translation from 16 to 463

> BO06860.pep
MGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGI
VLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEV
LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRSASFLDH

BO06860.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
RpS23-PA 143 CG8415-PA 1..143 1..143 747 100 Plus
RpS23-PB 143 CG8415-PB 1..143 1..143 747 100 Plus
tko-PB 140 CG7925-PB 42..127 31..124 138 39.4 Plus
tko-PC 154 CG7925-PC 56..141 31..124 138 39.4 Plus