Clone Sequence Records
BO06860.5prime Sequence
461 bp (460 high quality bases) assembled on 2005-12-03
> BO06860.5prime
GAAGTTATCAGTCGACATGGGCAAGCCAAGAGGTCTGCGCACTGCCAGGA
AGCATGTGAACCACCGTCGCGACCAGCGTTGGGCCGACAAGGACTACAAG
AAGGCTCATTTGGGCACCAGATGGAAGGCTAATCCCTTCGGAGGTGCTTC
CCACGCCAAGGGAATCGTCCTGGAGAAGGTCGGCGTCGAGGCCAAGCAGC
CTAACTCTGCCATCCGCAAGTGCGTGAGGGTGCAGCTCATCAAGAACGGC
AAGAAGATCACCGCCTTCGTGCCCCGTGACGGTAGCTTGAACTACATTGA
GGAGAACGACGAGGTCCTGGTTGCCGGTTTCGGTCGTAAGGGTCATGCCG
TCGGTGATATTCCCGGTGTGCGCTTCAAGGTTGTCAAGGTCGCCAACGTC
TCCCTGTTGGCCCTCTACAAGGAGAAGAAGGAACGCCCAAGATCTGCAAG
CTTTCTAGACC
BO06860.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8415-PA | 432 | RpS23-RA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:13:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS23-RA | 865 | CG8415-RA | 95..523 | 17..445 | 2145 | 100 | Plus |
RpS23-RB | 553 | CG8415-RB | 46..474 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14215438..14215702 | 445..181 | 1325 | 100 | Minus |
2R | 25286936 | 2R | 14215951..14216111 | 180..20 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:13:07 has no hits.
BO06860.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:49 Download gff for
BO06860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-PA | 1..432 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:40 Download gff for
BO06860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8415-PA | 1..432 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:18 Download gff for
BO06860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RB | 46..474 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:50 Download gff for
BO06860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RB | 46..474 | 17..445 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:50 Download gff for
BO06860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14215438..14215702 | 181..445 | 100 | <- | Minus |
2R | 14215951..14216114 | 15..180 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:18 Download gff for
BO06860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10102943..10103207 | 181..445 | 100 | <- | Minus |
arm_2R | 10103456..10103619 | 15..180 | 98 | | Minus |
BO06860.3prime Sequence
461 bp (460 high quality bases) assembled on 2005-12-03
> BO06860.3prime
ATGGTCTAGAAAGCTTGCAGATCTTGGGCGTTCCTTCTTCTCCTTGTAGA
GGGCCAACAGGGAGACGTTGGCGACCTTGACAACCTTGAAGCGCACACCG
GGAATATCACCGACGGCATGACCCTTACGACCGAAACCGGCAACCAGGAC
CTCGTCGTTCTCCTCAATGTAGTTCAAGCTACCGTCACGGGGCACGAAGG
CGGTGATCTTCTTGCCGTTCTTGATGAGCTGCACCCTCACGCACTTGCGG
ATGGCAGAGTTAGGCTGCTTGGCCTCGACGCCGACCTTCTCCAGGACGAT
TCCCTTGGCGTGGGAAGCACCTCCGAAGGGATTAGCCTTCCATCTGGTGC
CCAAATGAGCCTTCTTGTAGTCCTTGTCGGCCCAACGCTGGTCGCGACGG
TGGTTCACATGCTTCCTGGCAGTGCGCAGACCTCTTGGCTTGCCCATGTC
GACTGATAACT
BO06860.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8415-PA | 432 | RpS23-RA | 1..429 | 447..19 | 2145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS23-RA | 865 | CG8415-RA | 95..523 | 447..19 | 2145 | 100 | Minus |
RpS23-RB | 553 | CG8415-RB | 46..474 | 447..19 | 2145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14215438..14215702 | 19..283 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 14215951..14216111 | 284..444 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:44:20 has no hits.
BO06860.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:48 Download gff for
BO06860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-PA | 1..432 | 18..447 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:38 Download gff for
BO06860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8415-PA | 1..432 | 18..447 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:02:49 Download gff for
BO06860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RB | 46..474 | 19..447 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:26 Download gff for
BO06860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RB | 46..474 | 19..447 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:26 Download gff for
BO06860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14215438..14215702 | 19..283 | 100 | <- | Plus |
2R | 14215951..14216114 | 284..449 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:02:49 Download gff for
BO06860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10102943..10103207 | 19..283 | 100 | <- | Plus |
arm_2R | 10103456..10103619 | 284..449 | 98 | | Plus |
BO06860.complete Sequence
463 bp (463 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630565
> BO06860.complete
GAAGTTATCAGTCGACATGGGCAAGCCAAGAGGTCTGCGCACTGCCAGGA
AGCATGTGAACCACCGTCGCGACCAGCGTTGGGCCGACAAGGACTACAAG
AAGGCTCATTTGGGCACCAGATGGAAGGCTAATCCCTTCGGAGGTGCTTC
CCACGCCAAGGGAATCGTCCTGGAGAAGGTCGGCGTCGAGGCCAAGCAGC
CTAACTCTGCCATCCGCAAGTGCGTGAGGGTGCAGCTCATCAAGAACGGC
AAGAAGATCACCGCCTTCGTGCCCCGTGACGGTAGCTTGAACTACATTGA
GGAGAACGACGAGGTCCTGGTTGCCGGTTTCGGTCGTAAGGGTCATGCCG
TCGGTGATATTCCCGGTGTGCGCTTCAAGGTTGTCAAGGTCGCCAACGTC
TCCCTGTTGGCCCTCTACAAGGAGAAGAAGGAACGCCCAAGATCTGCAAG
CTTTCTAGACCAT
BO06860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS23-RA | 432 | CG8415-PA | 1..429 | 17..445 | 2145 | 100 | Plus |
RpS23-RB | 432 | CG8415-PB | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS23-RA | 865 | CG8415-RA | 95..523 | 17..445 | 2145 | 100 | Plus |
RpS23-RB | 553 | CG8415-RB | 46..474 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14215438..14215702 | 445..181 | 1325 | 100 | Minus |
2R | 25286936 | 2R | 14215951..14216111 | 180..20 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:29:19 has no hits.
BO06860.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:15 Download gff for
BO06860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RA | 1..432 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:17 Download gff for
BO06860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RA | 95..523 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:34 Download gff for
BO06860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RB | 46..474 | 17..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:16 Download gff for
BO06860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RA | 95..523 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:47 Download gff for
BO06860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS23-RB | 46..474 | 17..447 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:47 Download gff for
BO06860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14215436..14215702 | 181..447 | 99 | <- | Minus |
2R | 14215951..14216112 | 17..180 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:34 Download gff for
BO06860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10102941..10103207 | 181..447 | 99 | <- | Minus |
arm_2R | 10103456..10103617 | 17..180 | 98 | | Minus |
BO06860.pep Sequence
Translation from 16 to 463
> BO06860.pep
MGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGI
VLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEV
LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRSASFLDH
BO06860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS23-PA | 143 | CG8415-PA | 1..143 | 1..143 | 747 | 100 | Plus |
RpS23-PB | 143 | CG8415-PB | 1..143 | 1..143 | 747 | 100 | Plus |
tko-PB | 140 | CG7925-PB | 42..127 | 31..124 | 138 | 39.4 | Plus |
tko-PC | 154 | CG7925-PC | 56..141 | 31..124 | 138 | 39.4 | Plus |