Clone Sequence Records
BO06861.3prime Sequence
527 bp (526 high quality bases) assembled on 2005-12-03
> BO06861.3prime
ATGGTCTAGAAAGCTTGCGTTCCGTCCGCCCTTCTCGTCGCACTCGCGCC
TCAGATGTCCGCTCTTGCCGCAGCCGTAGCAAGTCTTCGAGGTCTCCGGG
CAGTTCTTGGAGATGTGTCCGGTGCGGTTGCACTTGTAGCACGACACATT
GGTCGGTCCACGTTCGTTGACGGCCTCTGGGCAGTTGCGCACCCAGTGTC
CGGTCTTGTTGCAACGGTAGCAGGTCGGGTTGTCCGCCTGGGTGCAGTCC
TTCGAGATGTGCCCGATGCCGTTGCAGCGGTAGCAGCGCTCGGCCTCCTC
GGGGCAGGCACGTGCGAAGTGCCCAAATTGGTTGCATTTGTAGCACTTCT
CGCGGTTGCGACGCATGCCGCCGCCATCGTTGCCGCGCATACCGCCGCCG
CCGCCACCACCGCCTCCTCCAACGCCGCCCGGACCTCCGCCGCCGCCGAG
ACTGCAGTCCCGGGCAAAGTGGCCCGGCCGGTTGCACTTGTAGCACGTGG
CAGACATCGACATGTCGACTGATAACT
BO06861.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3800-PA | 498 | CG3800-RA | 1..495 | 513..19 | 2450 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:07:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3800-RB | 2068 | CG3800-RB | 213..707 | 513..19 | 2460 | 99.8 | Minus |
| CG3800-RA | 2509 | CG3800-RA | 566..1060 | 513..19 | 2460 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22936018..22936512 | 19..513 | 2460 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:07:42 has no hits.
BO06861.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:50 Download gff for
BO06861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3800-PA | 1..498 | 18..513 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:41 Download gff for
BO06861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3800-PA | 1..498 | 18..513 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:13 Download gff for
BO06861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3800-RA | 559..1065 | 13..520 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:56:38 Download gff for
BO06861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3800-RA | 559..1065 | 13..520 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:56:38 Download gff for
BO06861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22936013..22936519 | 13..520 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:13 Download gff for
BO06861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18823536..18824042 | 13..520 | 98 | | Plus |
BO06861.5prime Sequence
527 bp (526 high quality bases) assembled on 2005-12-03
> BO06861.5prime
GAAGTTATCAGTCGACATGTCGATGTCTGCCACGTGCTACAAGTGCAACC
GGCCGGGCCACTTTGCCCGGGACTGCAGTCTCGGCGGCGGCGGAGGTCCG
GGCGGCGTTGGAGGAGGCGGTGGTGGCGGCGGCGGCGGTATGCGCGGCAA
CGATGGCGGCGGCATGCGTCGCAACCGCGAGAAGTGCTACAAATGCAACC
AATTTGGGCACTTCGCACGTGCCTGCCCCGAGGAGGCCGAGCGCTGCTAC
CGCTGCAACGGCATCGGGCACATCTCGAAGGACTGCACCCAGGCGGACAA
CCCGACCTGCTACCGTTGCAACAAGACCGGACACTGGGTGCGCAACTGCC
CAGAGGCCGTCAACGAACGTGGACCGACCAATGTGTCGTGCTACAAGTGC
AACCGCACCGGACACATCTCCAAGAACTGCCCGGAGACCTCGAAGACTTG
CTACGGCTGCGGCAAGAGCGGACATCTGAGGCGCGAGTGCGACGAGAAGG
GCGGACGGAACGCAAGCTTTCTAGACC
BO06861.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3800-PA | 498 | CG3800-RA | 1..495 | 17..511 | 2450 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3800-RB | 2068 | CG3800-RB | 213..707 | 17..511 | 2460 | 99.8 | Plus |
| CG3800-RA | 2509 | CG3800-RA | 566..1060 | 17..511 | 2460 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22936018..22936512 | 511..17 | 2460 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:07:46 has no hits.
BO06861.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:51 Download gff for
BO06861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3800-PA | 1..498 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:43 Download gff for
BO06861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3800-PA | 1..498 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:15 Download gff for
BO06861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3800-RA | 559..1065 | 10..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:18 Download gff for
BO06861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3800-RA | 559..1065 | 10..517 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:18 Download gff for
BO06861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22936013..22936519 | 10..517 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:15 Download gff for
BO06861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18823536..18824042 | 10..517 | 98 | | Minus |
BO06861.complete Sequence
529 bp assembled on 2006-12-18
GenBank Submission: FJ630566
> BO06861.complete
GAAGTTATCAGTCGACATGTCGATGTCTGCCACGTGCTACAAGTGCAACC
GGCCGGGCCACTTTGCCCGGGACTGCAGTCTCGGCGGCGGCGGAGGTCCG
GGCGGCGTTGGAGGAGGCGGTGGTGGCGGCGGCGGCGGTATGCGCGGCAA
CGATGGCGGCGGCATGCGTCGCAACCGCGAGAAGTGCTACAAATGCAACC
AATTTGGGCACTTCGCACGTGCCTGCCCCGAGGAGGCCGAGCGCTGCTAC
CGCTGCAACGGCATCGGGCACATCTCGAAGGACTGCACCCAGGCGGACAA
CCCGACCTGCTACCGTTGCAACAAGACCGGACACTGGGTGCGCAACTGCC
CAGAGGCCGTCAACGAACGTGGACCGACCAATGTGTCGTGCTACAAGTGC
AACCGCACCGGACACATCTCCAAGAACTGCCCGGAGACCTCGAAGACTTG
CTACGGCTGCGGCAAGAGCGGACATCTGAGGCGCGAGTGCGACGAGAAGG
GCGGACGGAACGCAAGCTTTCTAGACCAT
BO06861.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3800-RB | 498 | CG3800-PB | 1..495 | 17..511 | 2460 | 99.8 | Plus |
| CG3800-RA | 498 | CG3800-PA | 1..495 | 17..511 | 2460 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3800-RB | 2068 | CG3800-RB | 213..707 | 17..511 | 2460 | 99.8 | Plus |
| CG3800-RA | 2509 | CG3800-RA | 566..1060 | 17..511 | 2460 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22936018..22936512 | 511..17 | 2460 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:47:53 has no hits.
BO06861.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:21 Download gff for
BO06861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3800-RA | 1..498 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:50 Download gff for
BO06861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3800-RA | 412..918 | 10..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:02 Download gff for
BO06861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3800-RA | 566..1060 | 17..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:21 Download gff for
BO06861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3800-RA | 412..918 | 10..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:52 Download gff for
BO06861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3800-RA | 566..1060 | 17..513 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:52 Download gff for
BO06861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22936016..22936512 | 17..513 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:02 Download gff for
BO06861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18823539..18824035 | 17..513 | 99 | | Minus |
BO06861.pep Sequence
Translation from 16 to 529
> BO06861.pep
MSMSATCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGM
RRNREKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYR
CNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGK
SGHLRRECDEKGGRNASFLDH
BO06861.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3800-PB | 165 | CG3800-PB | 1..165 | 1..165 | 977 | 100 | Plus |
| CG3800-PA | 165 | CG3800-PA | 1..165 | 1..165 | 977 | 100 | Plus |
| x16-PB | 257 | CG10203-PB | 81..141 | 14..81 | 173 | 54.4 | Plus |
| x16-PA | 258 | CG10203-PA | 81..136 | 14..76 | 168 | 55.6 | Plus |
