Clone Sequence Records
BO06863.3prime Sequence
743 bp (742 high quality bases) assembled on 2005-12-03
> BO06863.3prime
ATGGTCTAGAAAGCTTGCTTGATTTTCCGCCATGGGCACATCGATGGCAA
TGTCGCCAACGCCGGGCACGGGAATCGAGTACGAAACACTAGCCAAATCG
TCGGTATCATTGGCTAGATCCATGGGTGCATGGTGCTGCGGCGCCTGGTC
CACCTGTGGCGCGATTCCACCAAGATGTCCAGCCAACTCAGCGGACTGAT
CCACCTCCGGCGGCACTTCGACGGGCGCACTGCTAATGTGCGGATAACTG
GTGCGCGAGGCCGCCAAACGCAGCTCCTCCGGCACGCCCTTCATTCGCAT
CGCAATGTGACGGGAGTAAGGTGCCATCTTCTGGAAATAGTCAATCAGCA
TTTGCGGATCCTTCTCCACGATCTGTGCCGATGGCACCAAGTCGAACTCG
TCGCAGAACTGCCAGCGCACCAGATACTTGATGTCGCCCGTCACATCCGT
TGCGCCCACGATCTCGGCCAGCTCCAAGCCGCGCTCGTAGCCGCGCAGCT
TCTGGATCTCTTCGCACTTGGGTTTCTTCTCGCCGCGCTTCTTGGACTTG
GCGCGCGACTCCTCGAATTTCTGGATGAGATTCGGGCAATCGCAGTTCTC
CTCGGGCTCCCAGGTGTTGTCCGCCGACGTGTAGCCACGCCACTTGATGT
AGTACTCAACCTTGCCTTCGCTGGTAATGCGCTTGTCCATGATGCGCTCC
ACCACGAAGTTGGGCTCGTTTTTAACCATGTCGACTGATAACT
BO06863.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6990-PA | 714 | HP1c-RA | 1..711 | 729..19 | 3555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP1c-RA | 986 | CG6990-RA | 98..808 | 729..19 | 3555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:10:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22745717..22746427 | 729..19 | 3555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:10:52 has no hits.
BO06863.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:52 Download gff for
BO06863.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP1c-PA | 1..714 | 15..729 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:44 Download gff for
BO06863.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6990-PA | 1..714 | 15..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:27 Download gff for
BO06863.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP1c-RA | 90..804 | 14..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:39:49 Download gff for
BO06863.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP1c-RA | 98..812 | 14..729 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:39:49 Download gff for
BO06863.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22745717..22746431 | 14..729 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:27 Download gff for
BO06863.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18571439..18572153 | 14..729 | 99 | | Minus |
BO06863.5prime Sequence
630 bp (628 high quality bases) assembled on 2005-12-03
> BO06863.5prime
GAAGTTATCAGTCGACATGGTTAAAAACGAGCCCAACTTCGTGGTGGAGC
GCATCATGGACAAGCGCATTACCAGCGAAGGCAAGGTTGAGTACTACATC
AAGTGGCGTGGCTACACGTCGGCGGACAACACCTGGGAGCCCGAGGAGAA
CTGCGATTGCCCGAATCTCATCCAGAAATTCGAGGAGTCGCGCGCCAAGT
CCAAGAAGCGCGGCGAGAAGAAACCCAAGTGCGAAGAGATCCAGAAGCTG
CGCGGCTACGAGCGCGGCTTGGAGCTGGCCGAGATCGTGGGCGCAACGGA
TGTGACGGGCGACATCAAGTATCTGGTGCGCTGGCAGTTCTGCGACGAGT
TCGACTTGGTGCCATCGGCACAGATCGTGGAGAAGGATCCGCAAATGCTG
ATTGACTATTTCCAGAAGATGGCACCTTACTCCCGTCACATTGCGATGCG
AATGAAGGGCGTGCCGGAGGAGCTGCGTTTGGCGGCCTCGCGCACCAGTT
ATCCGCACATTAGCAGTGCGCCCGTCGAAGTGCCGCCGGAGGTGGATCAG
TCCGCTGAGTTGGCTGGACATCTTGGTGGAATCGCGCCACAGGTGGACCA
GGCGCCGCAGCACCATGCACCCATGGATCT
BO06863.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6990-PA | 714 | HP1c-RA | 1..614 | 17..630 | 3070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP1c-RA | 986 | CG6990-RA | 98..711 | 17..630 | 3070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22745717..22746330 | 17..630 | 3070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:13:18 has no hits.
BO06863.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:53 Download gff for
BO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP1c-PA | 1..614 | 17..630 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:46 Download gff for
BO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6990-PA | 1..614 | 17..630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:20 Download gff for
BO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP1c-RA | 90..703 | 17..630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:52 Download gff for
BO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP1c-RA | 98..711 | 17..630 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:52 Download gff for
BO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22745717..22746330 | 17..630 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:20 Download gff for
BO06863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18571439..18572052 | 17..630 | 100 | | Plus |
BO06863.complete Sequence
745 bp (745 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630567
> BO06863.complete
GAAGTTATCAGTCGACATGGTTAAAAACGAGCCCAACTTCGTGGTGGAGC
GCATCATGGACAAGCGCATTACCAGCGAAGGCAAGGTTGAGTACTACATC
AAGTGGCGTGGCTACACGTCGGCGGACAACACCTGGGAGCCCGAGGAGAA
CTGCGATTGCCCGAATCTCATCCAGAAATTCGAGGAGTCGCGCGCCAAGT
CCAAGAAGCGCGGCGAGAAGAAACCCAAGTGCGAAGAGATCCAGAAGCTG
CGCGGCTACGAGCGCGGCTTGGAGCTGGCCGAGATCGTGGGCGCAACGGA
TGTGACGGGCGACATCAAGTATCTGGTGCGCTGGCAGTTCTGCGACGAGT
TCGACTTGGTGCCATCGGCACAGATCGTGGAGAAGGATCCGCAAATGCTG
ATTGACTATTTCCAGAAGATGGCACCTTACTCCCGTCACATTGCGATGCG
AATGAAGGGCGTGCCGGAGGAGCTGCGTTTGGCGGCCTCGCGCACCAGTT
ATCCGCACATTAGCAGTGCGCCCGTCGAAGTGCCGCCGGAGGTGGATCAG
TCCGCTGAGTTGGCTGGACATCTTGGTGGAATCGCGCCACAGGTGGACCA
GGCGCCGCAGCACCATGCACCCATGGATCTAGCCAATGATACCGACGATT
TGGCTAGTGTTTCGTACTCGATTCCCGTGCCCGGCGTTGGCGACATTGCC
ATCGATGTGCCCATGGCGGAAAATCAAGCAAGCTTTCTAGACCAT
BO06863.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP1c-RA | 714 | CG6990-PA | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP1c-RA | 986 | CG6990-RA | 98..808 | 17..727 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22745717..22746427 | 17..727 | 3555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:08:15 has no hits.
BO06863.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:19 Download gff for
BO06863.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP1c-RA | 1..714 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:05 Download gff for
BO06863.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP1c-RA | 90..804 | 17..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:23 Download gff for
BO06863.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP1c-RA | 90..800 | 17..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:20 Download gff for
BO06863.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP1c-RA | 90..804 | 17..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:43 Download gff for
BO06863.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP1c-RA | 98..808 | 17..729 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:43 Download gff for
BO06863.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22745717..22746427 | 17..729 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:23 Download gff for
BO06863.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18571439..18572149 | 17..729 | 99 | | Plus |
BO06863.pep Sequence
Translation from 16 to 745
> BO06863.pep
MVKNEPNFVVERIMDKRITSEGKVEYYIKWRGYTSADNTWEPEENCDCPN
LIQKFEESRAKSKKRGEKKPKCEEIQKLRGYERGLELAEIVGATDVTGDI
KYLVRWQFCDEFDLVPSAQIVEKDPQMLIDYFQKMAPYSRHIAMRMKGVP
EELRLAASRTSYPHISSAPVEVPPEVDQSAELAGHLGGIAPQVDQAPQHH
APMDLANDTDDLASVSYSIPVPGVGDIAIDVPMAENQASFLDH
BO06863.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP1c-PA | 237 | CG6990-PA | 1..237 | 1..237 | 1251 | 100 | Plus |
| HP1b-PB | 240 | CG7041-PB | 4..148 | 8..134 | 302 | 41.8 | Plus |
| HP1b-PC | 240 | CG7041-PC | 4..148 | 8..134 | 302 | 41.8 | Plus |
| HP1b-PA | 240 | CG7041-PA | 4..148 | 8..134 | 302 | 41.8 | Plus |
| Su(var)205-PB | 206 | CG8409-PB | 19..196 | 3..134 | 252 | 31.8 | Plus |
