Clone BO06864 Report

Search the DGRC for BO06864

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptTrip1-RA
Protein status:BO06864.pep: validated full length
Sequenced Size:1012

Clone Sequence Records

BO06864.3prime Sequence

918 bp (829 high quality bases) assembled on 2005-12-03

> BO06864.3prime
ATGGTCTAGAAAGCTTGCCTCGAAGATGTTCTCAAAGTATGTACTATCGA
ATGTCTGGACACGCACGAAACCATCTTCTCCGCCCGAGGCGTAACTCTTG
CCGTCCGGATGGAAGGCCAAACTGTTGATGGGTCCGAAATGGCCCTTGAG
TCGGGCGAACTCCTCCTCGTATATCAGGTGGAAGAAGCGCGAGTCAAACT
TGCCAGCCTTCGTAGACGTAGTGGTCACCTCCATGGCATCTTGACCGCCG
CCCAGCACGACATGATCCATGATTGGGCTGATGGCCGCCGAGTTTACTGG
ACGCTCCGTTTTGTAGGTCTTGAGGCACATCAGGGACTCCGAATCGAACA
ATTTGGCGGTGGTGTCCTTGGAGGCGGTCACAAACATGGTGCCATCCTTG
CTCAACTGCATGTCGTTGATGCCAGCGCTGTGATCCGTGCCAGAGTCAAC
CACCTTTTGACCCTTACGGATGTCCCAGATGGCAATGTTGCCATTATCGT
GACCTGTGATGATGGTCTCATCCAGAGGACCCCACAACATCGACGTAATT
TTGGACTCGGTCATCGGGATGCGGAGTGTGGGCTCCTGCTCCGACAACGA
GGAATCGGCGTTGCGGACATCGATGAGGAACAGTTCACAGCTCTGTCCCA
TCGCTTTGTCCGTTGAGTAGGCTGCCTGGTTGCCCGAGAAGCTGAAGTTG
CTGGTGCGCACCGATGACTTGGTCGGAATGGAGGCGATAACGGTGCCGTA
CTCGACGTCCCAGATCTTAGCGGTCATATCACCGGCGCCGGTGATGAGCT
TACGGCTCTCCCAGTCCACATCCAGGCACCAGACCGCACCCTGGTGACCA
TCGTAAGTGCCCAAACGTTCTCCGTTCAGCGAGTACCACACATTGGGCTT
CTGATCCTTGGAGCAGGA

BO06864.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8882-PA 981 Trip1-RA 79..978 918..19 4475 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
Trip1-RA 1177 CG8882-RA 161..1060 918..19 4485 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4966484..4966971 19..506 2440 100 Plus
2L 23513712 2L 4967022..4967438 502..918 2070 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 07:05:29 has no hits.

BO06864.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:54 Download gff for BO06864.3prime
Subject Subject Range Query Range Percent Splice Strand
Trip1-PA 80..981 18..917 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:48 Download gff for BO06864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8882-PA 80..981 18..917 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:07 Download gff for BO06864.3prime
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 162..1066 10..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:01 Download gff for BO06864.3prime
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 162..1066 10..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:01 Download gff for BO06864.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4966478..4966968 10..503 99 <- Plus
2L 4967024..4967437 504..917 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:07 Download gff for BO06864.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4966478..4966968 10..503 99 <- Plus
arm_2L 4967024..4967437 504..917 99   Plus

BO06864.5prime Sequence

876 bp (633 high quality bases) assembled on 2005-12-03

> BO06864.5prime
GAAGTTATCAGTCGACATGCGTCCGTTGATGCTTCAGGGCCACGAGCGTT
CCATAACGCAAATCAAGTACAACCGCGAGGGCGACCTGCTCTTCTCCTGC
TCCAAGGATCAGAAGCCCAATGTGTGGTACTCGCTGAACGGAGAACGTTT
GGGCACCTACGATGGTCACCAGGGTGCGGTCTGGTGCCTGGATGTGGACT
GGGAGAGCCGTAAGCTCATCACCGGCGCCGGTGATATGACCGCTAAGATC
TGGGACGTCGAGTACGGCACCGTTATCGCCTCCATTCCGACCAAGTCATC
GGTGCGCACCAGCAACTTCAGCTTCTCGGGCAACCAGGCAGCCTACTCAA
CGGACAAAGCGATGGGACAGAGCTGTGAACTGTTCCTCATCGATGTCCGC
AACGCCGATTCCTCGTTGTCGGAGCAGGAGCCCACACTCCGCATCCCGAT
GACCGAGTCCAAAATTACGTCGATGTTGTGGGGTCCTCTGGATGAGACCA
TCATCACAGGTCACGATAATGGCAACATTGCCATCTGGGACATCCGTAAG
GGTCAAAAGGTGGTTGACTCTGGCACGGATCACAGCGCTGGCATCAACGA
CATGCAGTTGAGCAAGGATGGCACCATGTTTGTGACGGCCTCCAAGGACA
CCACCGCCAAATTGTTCGATTCGGAGTCCCTGATGTGCCTCAAGACCTAC
AAAACGGAGCGTCCAGTAAACTCGGCGGCCATCAGCCCAATCATGGATCA
TGTCGTGCTGGGCGGCGGTCAAGATGCCATGGAGGTGACCACTACGTCTA
CGAAGGCTGGCAAGTTTGACTCGCGCTTCTTCCACCTGATATACGAGGAG
GAGTTCGCCCGACTCAAGGGCCATTT

BO06864.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8882-PA 981 Trip1-RA 1..860 17..876 4275 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Trip1-RA 1177 CG8882-RA 83..942 17..876 4285 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4967022..4967514 511..19 2465 100 Minus
2L 23513712 2L 4966602..4966971 876..507 1835 99.7 Minus
Blast to na_te.dros performed on 2015-02-09 19:20:52 has no hits.

BO06864.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:55 Download gff for BO06864.5prime
Subject Subject Range Query Range Percent Splice Strand
Trip1-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:49 Download gff for BO06864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8882-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:54 Download gff for BO06864.5prime
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 83..942 17..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:47 Download gff for BO06864.5prime
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 83..942 17..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:47 Download gff for BO06864.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4966602..4966968 510..876 99 <- Minus
2L 4967024..4967514 19..509 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:54 Download gff for BO06864.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4966602..4966968 510..876 99 <- Minus
arm_2L 4967024..4967514 19..509 100   Minus

BO06864.complete Sequence

1012 bp (1012 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630568

> BO06864.complete
GAAGTTATCAGTCGACATGCGTCCGTTGATGCTTCAGGGCCACGAGCGTT
CCATAACGCAAATCAAGTACAACCGCGAGGGCGACCTGCTCTTCTCCTGC
TCCAAGGATCAGAAGCCCAATGTGTGGTACTCGCTGAACGGAGAACGTTT
GGGCACCTACGATGGTCACCAGGGTGCGGTCTGGTGCCTGGATGTGGACT
GGGAGAGCCGTAAGCTCATCACCGGCGCCGGTGATATGACCGCTAAGATC
TGGGACGTCGAGTACGGCACCGTTATCGCCTCCATTCCGACCAAGTCATC
GGTGCGCACCAGCAACTTCAGCTTCTCGGGCAACCAGGCAGCCTACTCAA
CGGACAAAGCGATGGGACAGAGCTGTGAACTGTTCCTCATCGATGTCCGC
AACGCCGATTCCTCGTTGTCGGAGCAGGAGCCCACACTCCGCATCCCGAT
GACCGAGTCCAAAATTACGTCGATGTTGTGGGGTCCTCTGGATGAGACCA
TCATCACAGGTCACGATAATGGCAACATTGCCATCTGGGACATCCGTAAG
GGTCAAAAGGTGGTTGACTCTGGCACGGATCACAGCGCTGGCATCAACGA
CATGCAGTTGAGCAAGGATGGCACCATGTTTGTGACCGCCTCCAAGGACA
CCACCGCCAAATTGTTCGATTCGGAGTCCCTGATGTGCCTCAAGACCTAC
AAAACGGAGCGTCCAGTAAACTCGGCGGCCATCAGCCCAATCATGGATCA
TGTCGTGCTGGGCGGCGGTCAAGATGCCATGGAGGTGACCACTACGTCTA
CGAAGGCTGGCAAGTTTGACTCGCGCTTCTTCCACCTGATATACGAGGAG
GAGTTCGCCCGACTCAAGGGCCATTTCGGACCCATCAACAGTTTGGCCTT
CCATCCGGACGGCAAGAGTTACGCCTCGGGCGGAGAAGATGGTTTCGTGC
GTGTCCAGACATTCGATAGTACATACTTTGAGAACATCTTCGAGGCAAGC
TTTCTAGACCAT

BO06864.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Trip1-RA 981 CG8882-PA 1..978 17..994 4890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Trip1-RA 1177 CG8882-RA 83..1060 17..994 4890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4967022..4967514 511..19 2465 100 Minus
2L 23513712 2L 4966484..4966971 994..507 2440 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:33:58 has no hits.

BO06864.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:38 Download gff for BO06864.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 1..981 17..995 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:45 Download gff for BO06864.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 86..1069 17..1003 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:01 Download gff for BO06864.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 83..1060 17..996 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:24 Download gff for BO06864.complete
Subject Subject Range Query Range Percent Splice Strand
Trip1-RA 83..1060 17..996 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:24 Download gff for BO06864.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4966482..4966968 510..996 99 <- Minus
2L 4967024..4967515 17..509 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:01 Download gff for BO06864.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4966482..4966968 510..996 99 <- Minus
arm_2L 4967024..4967515 17..509 99   Minus

BO06864.pep Sequence

Translation from 16 to 1012

> BO06864.pep
MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDG
HQGAVWCLDVDWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSN
FSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKI
TSMLWGPLDETIITGHDNGNIAIWDIRKGQKVVDSGTDHSAGINDMQLSK
DGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAAISPIMDHVVLGG
GQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPDGK
SYASGGEDGFVRVQTFDSTYFENIFEASFLDH

BO06864.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
Trip1-PA 326 CG8882-PA 1..326 1..326 1716 100 Plus
wmd-PB 328 CG3957-PB 10..304 3..320 290 29.3 Plus
wmd-PA 328 CG3957-PA 10..304 3..320 290 29.3 Plus
CG3436-PC 347 CG3436-PC 49..337 4..308 211 25.2 Plus
CG3436-PA 347 CG3436-PA 49..337 4..308 211 25.2 Plus