Clone Sequence Records
BO06864.3prime Sequence
918 bp (829 high quality bases) assembled on 2005-12-03
> BO06864.3prime
ATGGTCTAGAAAGCTTGCCTCGAAGATGTTCTCAAAGTATGTACTATCGA
ATGTCTGGACACGCACGAAACCATCTTCTCCGCCCGAGGCGTAACTCTTG
CCGTCCGGATGGAAGGCCAAACTGTTGATGGGTCCGAAATGGCCCTTGAG
TCGGGCGAACTCCTCCTCGTATATCAGGTGGAAGAAGCGCGAGTCAAACT
TGCCAGCCTTCGTAGACGTAGTGGTCACCTCCATGGCATCTTGACCGCCG
CCCAGCACGACATGATCCATGATTGGGCTGATGGCCGCCGAGTTTACTGG
ACGCTCCGTTTTGTAGGTCTTGAGGCACATCAGGGACTCCGAATCGAACA
ATTTGGCGGTGGTGTCCTTGGAGGCGGTCACAAACATGGTGCCATCCTTG
CTCAACTGCATGTCGTTGATGCCAGCGCTGTGATCCGTGCCAGAGTCAAC
CACCTTTTGACCCTTACGGATGTCCCAGATGGCAATGTTGCCATTATCGT
GACCTGTGATGATGGTCTCATCCAGAGGACCCCACAACATCGACGTAATT
TTGGACTCGGTCATCGGGATGCGGAGTGTGGGCTCCTGCTCCGACAACGA
GGAATCGGCGTTGCGGACATCGATGAGGAACAGTTCACAGCTCTGTCCCA
TCGCTTTGTCCGTTGAGTAGGCTGCCTGGTTGCCCGAGAAGCTGAAGTTG
CTGGTGCGCACCGATGACTTGGTCGGAATGGAGGCGATAACGGTGCCGTA
CTCGACGTCCCAGATCTTAGCGGTCATATCACCGGCGCCGGTGATGAGCT
TACGGCTCTCCCAGTCCACATCCAGGCACCAGACCGCACCCTGGTGACCA
TCGTAAGTGCCCAAACGTTCTCCGTTCAGCGAGTACCACACATTGGGCTT
CTGATCCTTGGAGCAGGA
BO06864.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8882-PA | 981 | Trip1-RA | 79..978 | 918..19 | 4475 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trip1-RA | 1177 | CG8882-RA | 161..1060 | 918..19 | 4485 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4966484..4966971 | 19..506 | 2440 | 100 | Plus |
2L | 23513712 | 2L | 4967022..4967438 | 502..918 | 2070 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:05:29 has no hits.
BO06864.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:54 Download gff for
BO06864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-PA | 80..981 | 18..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:48 Download gff for
BO06864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8882-PA | 80..981 | 18..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:07 Download gff for
BO06864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 162..1066 | 10..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:01 Download gff for
BO06864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 162..1066 | 10..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:01 Download gff for
BO06864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4966478..4966968 | 10..503 | 99 | <- | Plus |
2L | 4967024..4967437 | 504..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:07 Download gff for
BO06864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4966478..4966968 | 10..503 | 99 | <- | Plus |
arm_2L | 4967024..4967437 | 504..917 | 99 | | Plus |
BO06864.5prime Sequence
876 bp (633 high quality bases) assembled on 2005-12-03
> BO06864.5prime
GAAGTTATCAGTCGACATGCGTCCGTTGATGCTTCAGGGCCACGAGCGTT
CCATAACGCAAATCAAGTACAACCGCGAGGGCGACCTGCTCTTCTCCTGC
TCCAAGGATCAGAAGCCCAATGTGTGGTACTCGCTGAACGGAGAACGTTT
GGGCACCTACGATGGTCACCAGGGTGCGGTCTGGTGCCTGGATGTGGACT
GGGAGAGCCGTAAGCTCATCACCGGCGCCGGTGATATGACCGCTAAGATC
TGGGACGTCGAGTACGGCACCGTTATCGCCTCCATTCCGACCAAGTCATC
GGTGCGCACCAGCAACTTCAGCTTCTCGGGCAACCAGGCAGCCTACTCAA
CGGACAAAGCGATGGGACAGAGCTGTGAACTGTTCCTCATCGATGTCCGC
AACGCCGATTCCTCGTTGTCGGAGCAGGAGCCCACACTCCGCATCCCGAT
GACCGAGTCCAAAATTACGTCGATGTTGTGGGGTCCTCTGGATGAGACCA
TCATCACAGGTCACGATAATGGCAACATTGCCATCTGGGACATCCGTAAG
GGTCAAAAGGTGGTTGACTCTGGCACGGATCACAGCGCTGGCATCAACGA
CATGCAGTTGAGCAAGGATGGCACCATGTTTGTGACGGCCTCCAAGGACA
CCACCGCCAAATTGTTCGATTCGGAGTCCCTGATGTGCCTCAAGACCTAC
AAAACGGAGCGTCCAGTAAACTCGGCGGCCATCAGCCCAATCATGGATCA
TGTCGTGCTGGGCGGCGGTCAAGATGCCATGGAGGTGACCACTACGTCTA
CGAAGGCTGGCAAGTTTGACTCGCGCTTCTTCCACCTGATATACGAGGAG
GAGTTCGCCCGACTCAAGGGCCATTT
BO06864.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8882-PA | 981 | Trip1-RA | 1..860 | 17..876 | 4275 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trip1-RA | 1177 | CG8882-RA | 83..942 | 17..876 | 4285 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4967022..4967514 | 511..19 | 2465 | 100 | Minus |
2L | 23513712 | 2L | 4966602..4966971 | 876..507 | 1835 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:20:52 has no hits.
BO06864.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:55 Download gff for
BO06864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:49 Download gff for
BO06864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8882-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:54 Download gff for
BO06864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 83..942 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:47 Download gff for
BO06864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 83..942 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:47 Download gff for
BO06864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4966602..4966968 | 510..876 | 99 | <- | Minus |
2L | 4967024..4967514 | 19..509 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:54 Download gff for
BO06864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4966602..4966968 | 510..876 | 99 | <- | Minus |
arm_2L | 4967024..4967514 | 19..509 | 100 | | Minus |
BO06864.complete Sequence
1012 bp (1012 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630568
> BO06864.complete
GAAGTTATCAGTCGACATGCGTCCGTTGATGCTTCAGGGCCACGAGCGTT
CCATAACGCAAATCAAGTACAACCGCGAGGGCGACCTGCTCTTCTCCTGC
TCCAAGGATCAGAAGCCCAATGTGTGGTACTCGCTGAACGGAGAACGTTT
GGGCACCTACGATGGTCACCAGGGTGCGGTCTGGTGCCTGGATGTGGACT
GGGAGAGCCGTAAGCTCATCACCGGCGCCGGTGATATGACCGCTAAGATC
TGGGACGTCGAGTACGGCACCGTTATCGCCTCCATTCCGACCAAGTCATC
GGTGCGCACCAGCAACTTCAGCTTCTCGGGCAACCAGGCAGCCTACTCAA
CGGACAAAGCGATGGGACAGAGCTGTGAACTGTTCCTCATCGATGTCCGC
AACGCCGATTCCTCGTTGTCGGAGCAGGAGCCCACACTCCGCATCCCGAT
GACCGAGTCCAAAATTACGTCGATGTTGTGGGGTCCTCTGGATGAGACCA
TCATCACAGGTCACGATAATGGCAACATTGCCATCTGGGACATCCGTAAG
GGTCAAAAGGTGGTTGACTCTGGCACGGATCACAGCGCTGGCATCAACGA
CATGCAGTTGAGCAAGGATGGCACCATGTTTGTGACCGCCTCCAAGGACA
CCACCGCCAAATTGTTCGATTCGGAGTCCCTGATGTGCCTCAAGACCTAC
AAAACGGAGCGTCCAGTAAACTCGGCGGCCATCAGCCCAATCATGGATCA
TGTCGTGCTGGGCGGCGGTCAAGATGCCATGGAGGTGACCACTACGTCTA
CGAAGGCTGGCAAGTTTGACTCGCGCTTCTTCCACCTGATATACGAGGAG
GAGTTCGCCCGACTCAAGGGCCATTTCGGACCCATCAACAGTTTGGCCTT
CCATCCGGACGGCAAGAGTTACGCCTCGGGCGGAGAAGATGGTTTCGTGC
GTGTCCAGACATTCGATAGTACATACTTTGAGAACATCTTCGAGGCAAGC
TTTCTAGACCAT
BO06864.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trip1-RA | 981 | CG8882-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trip1-RA | 1177 | CG8882-RA | 83..1060 | 17..994 | 4890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4967022..4967514 | 511..19 | 2465 | 100 | Minus |
2L | 23513712 | 2L | 4966484..4966971 | 994..507 | 2440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:33:58 has no hits.
BO06864.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:38 Download gff for
BO06864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 1..981 | 17..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:45 Download gff for
BO06864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 86..1069 | 17..1003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:01 Download gff for
BO06864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 83..1060 | 17..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:24 Download gff for
BO06864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trip1-RA | 83..1060 | 17..996 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:24 Download gff for
BO06864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4966482..4966968 | 510..996 | 99 | <- | Minus |
2L | 4967024..4967515 | 17..509 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:01 Download gff for
BO06864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4966482..4966968 | 510..996 | 99 | <- | Minus |
arm_2L | 4967024..4967515 | 17..509 | 99 | | Minus |
BO06864.pep Sequence
Translation from 16 to 1012
> BO06864.pep
MRPLMLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDG
HQGAVWCLDVDWESRKLITGAGDMTAKIWDVEYGTVIASIPTKSSVRTSN
FSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKI
TSMLWGPLDETIITGHDNGNIAIWDIRKGQKVVDSGTDHSAGINDMQLSK
DGTMFVTASKDTTAKLFDSESLMCLKTYKTERPVNSAAISPIMDHVVLGG
GQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPDGK
SYASGGEDGFVRVQTFDSTYFENIFEASFLDH
BO06864.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trip1-PA | 326 | CG8882-PA | 1..326 | 1..326 | 1716 | 100 | Plus |
wmd-PB | 328 | CG3957-PB | 10..304 | 3..320 | 290 | 29.3 | Plus |
wmd-PA | 328 | CG3957-PA | 10..304 | 3..320 | 290 | 29.3 | Plus |
CG3436-PC | 347 | CG3436-PC | 49..337 | 4..308 | 211 | 25.2 | Plus |
CG3436-PA | 347 | CG3436-PA | 49..337 | 4..308 | 211 | 25.2 | Plus |