Clone Sequence Records
BO06865.3prime Sequence
895 bp (815 high quality bases) assembled on 2005-12-03
> BO06865.3prime
ATGGTCTAGAAAGCTTGCCTCGTTGGTAAACTTGGCAGGGCGCTTCTCGG
CGAAAGCGGTCATGCCCTCCTTGCGATCGGCCGTGGAGAACGTGGCATGG
AAGGTGCGACGCTCGAACTTCAGGCCCTCTTGGAGAGTGGTCTCGTAAGC
CGTGTTAACCGCCTCCTTGCACAGCTGCACGATCAGATTGGAGTGGGTGC
CGATCTTCTCGCCCAGCTTGACGGCCTCGCCCAATAACTGGTCGGCGGGC
ACCACCTTGCTGGCCAGACCCAGCTTCTCAGCCTCCTGGGCGCCGATCAT
ATTGCCGGTGAGGCACATTTCCATGGCCTTGGACTTGCCAACGACGCGGG
TCAGACGCTGGGTGCCACCGGCACCGGGAATGGTGCCCAGGGCAATTTCA
GGCTGACCAAACTTGGCCTTGTCACCGGCATATATGATGTCGCACATCAT
GGCCAGCTCACAGCCACCGCCCAAGGCGTAACCATTCACGGCAGCAATGA
TGGGCTTCTGGGTGCGGGCCACCTCTGTCCAGTCGTTCAAGAAGTTGCCC
TGGATGCACTGCGAGTAGGTGTTGCCCACCATCTCCTTAATATCAGCGCC
AGCGGCGAAGGCCTTCTCGCTGCCCGTCAAAACGATGGCGGAGATGGTCT
TATCCTTGCTGAATTGCTGCAATGCGGTGGACAGCTCCTTCATCAGGCCA
TTGCAGAGGGCATTCAGGGCCTTGGGGCGGTTCAGGGTGATCACGCCTAC
GTTCTTGCCCTCGCCGGCCACTTCGGTCTTGATGTACTCCCAGTTGTTGT
TGGTGGAGGAGCTGCTGAAACGGGTGGCCACCTGTGGCTGACGGGCGGCT
GCCTGCAGGACGCACTGGGCGCGGCTAGCGAAGATCTTAGCAATG
BO06865.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6543-PB | 888 | CG6543-RB | 9..885 | 895..19 | 4385 | 100 | Minus |
CG6543-PA | 888 | CG6543-RA | 9..885 | 895..19 | 4385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6543-RA | 1051 | CG6543-RA | 69..945 | 895..19 | 4385 | 100 | Minus |
CG6543-RB | 1124 | CG6543-RB | 142..1018 | 895..19 | 4385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13853180..13853905 | 81..806 | 3630 | 100 | Plus |
2R | 25286936 | 2R | 13854102..13854190 | 807..895 | 445 | 100 | Plus |
2R | 25286936 | 2R | 13853053..13853116 | 19..82 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:27:55 has no hits.
BO06865.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:56 Download gff for
BO06865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-PB | 9..888 | 15..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:50 Download gff for
BO06865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-PA | 9..888 | 15..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:38 Download gff for
BO06865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RB | 142..1021 | 15..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:37:13 Download gff for
BO06865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RB | 142..1021 | 15..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:37:13 Download gff for
BO06865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13853049..13853115 | 15..81 | 97 | <- | Plus |
2R | 13853181..13853905 | 82..806 | 100 | <- | Plus |
2R | 13854102..13854190 | 807..895 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:38 Download gff for
BO06865.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9740554..9740620 | 15..81 | 97 | <- | Plus |
arm_2R | 9740686..9741410 | 82..806 | 100 | <- | Plus |
arm_2R | 9741607..9741695 | 807..895 | 100 | | Plus |
BO06865.5prime Sequence
917 bp (871 high quality bases) assembled on 2005-12-03
> BO06865.5prime
GAAGTTATCAGTCGACATGGCCAACATTGCTAAGATCTTCGCTAGCCGCG
CCCAGTGCGTCCTGCAGGCAGCCGCCCGTCAGCCACAGGTGGCCACCCGT
TTCAGCAGCTCCTCCACCAACAACAACTGGGAGTACATCAAGACCGAAGT
GGCCGGCGAGGGCAAGAACGTAGGCGTGATCACCCTGAACCGCCCCAAGG
CCCTGAATGCCCTCTGCAATGGCCTGATGAAGGAGCTGTCCACCGCATTG
CAGCAATTCAGCAAGGATAAGACCATCTCCGCCATCGTTTTGACGGGCAG
CGAGAAGGCCTTCGCCGCTGGCGCTGATATTAAGGAGATGGTGGGCAACA
CCTACTCGCAGTGCATCCAGGGCAACTTCTTGAACGACTGGACAGAGGTG
GCCCGCACCCAGAAGCCCATCATTGCTGCCGTGAATGGTTACGCCTTGGG
CGGTGGCTGTGAGCTGGCCATGATGTGCGACATCATATATGCCGGTGACA
AGGCCAAGTTTGGTCAGCCTGAAATTGCCCTGGGCACCATTCCCGGTGCC
GGTGGCACCCAGCGTCTGACCCGCGTCGTTGGCAAGTCCAAGGCCATGGA
AATGTGCCTCACCGGCAATATGATCGGCGCCCAGGAGGCTGAGAAGCTGG
GTCTGGCCAGCAAGGTGGTGCCCGCCGACCAGTTATTGGGCGAGGCCGTC
AAGCTGGGCGAGAAGATCGGCACCCACTCCAATCTGATCGTGCAGCTGTG
CAAGGAGGCGGTTAACACGGCTTACGAGACCACTCTCCAAGAGGGCCTGA
AGTTCGAGCGTCGCACCTTCCATGCCACGTTCTCCACGGCCGATCGCAAG
GAGGGCATGACCGCTTTCGCCGAGAAGCGCCCTGCCAAGTTTACCAACGA
GGCAAGCTTTCTAGACC
BO06865.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6543-PB | 888 | CG6543-RB | 1..885 | 17..901 | 4425 | 100 | Plus |
CG6543-PA | 888 | CG6543-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6543-RA | 1051 | CG6543-RA | 61..945 | 17..901 | 4425 | 100 | Plus |
CG6543-RB | 1124 | CG6543-RB | 134..1018 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13853180..13853905 | 839..114 | 3630 | 100 | Minus |
2R | 25286936 | 2R | 13854102..13854198 | 113..17 | 485 | 100 | Minus |
2R | 25286936 | 2R | 13853053..13853116 | 901..838 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:51:09 has no hits.
BO06865.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:57 Download gff for
BO06865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-PB | 1..888 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:52 Download gff for
BO06865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-PA | 1..888 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:28 Download gff for
BO06865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RB | 124..1021 | 8..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:50:29 Download gff for
BO06865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RB | 124..1021 | 8..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:50:29 Download gff for
BO06865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13853049..13853115 | 839..905 | 97 | <- | Minus |
2R | 13853181..13853905 | 114..838 | 100 | <- | Minus |
2R | 13854102..13854208 | 8..113 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:28 Download gff for
BO06865.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9740554..9740620 | 839..905 | 97 | <- | Minus |
arm_2R | 9740686..9741410 | 114..838 | 100 | <- | Minus |
arm_2R | 9741607..9741713 | 8..113 | 96 | | Minus |
BO06865.complete Sequence
919 bp (919 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630569
> BO06865.complete
GAAGTTATCAGTCGACATGGCCAACATTGCTAAGATCTTCGCTAGCCGCG
CCCAGTGCGTCCTGCAGGCAGCCGCCCGTCAGCCACAGGTGGCCACCCGT
TTCAGCAGCTCCTCCACCAACAACAACTGGGAGTACATCAAGACCGAAGT
GGCCGGCGAGGGCAAGAACGTAGGCGTGATCACCCTGAACCGCCCCAAGG
CCCTGAATGCCCTCTGCAATGGCCTGATGAAGGAGCTGTCCACCGCATTG
CAGCAATTCAGCAAGGATAAGACCATCTCCGCCATCGTTTTGACGGGCAG
CGAGAAGGCCTTCGCCGCTGGCGCTGATATTAAGGAGATGGTGGGCAACA
CCTACTCGCAGTGCATCCAGGGCAACTTCTTGAACGACTGGACAGAGGTG
GCCCGCACCCAGAAGCCCATCATTGCTGCCGTGAATGGTTACGCCTTGGG
CGGTGGCTGTGAGCTGGCCATGATGTGCGACATCATATATGCCGGTGACA
AGGCCAAGTTTGGTCAGCCTGAAATTGCCCTGGGCACCATTCCCGGTGCC
GGTGGCACCCAGCGTCTGACCCGCGTCGTTGGCAAGTCCAAGGCCATGGA
AATGTGCCTCACCGGCAATATGATCGGCGCCCAGGAGGCTGAGAAGCTGG
GTCTGGCCAGCAAGGTGGTGCCCGCCGACCAGTTATTGGGCGAGGCCGTC
AAGCTGGGCGAGAAGATCGGCACCCACTCCAATCTGATCGTGCAGCTGTG
CAAGGAGGCGGTTAACACGGCTTACGAGACCACTCTCCAAGAGGGCCTGA
AGTTCGAGCGTCGCACCTTCCATGCCACGTTCTCCACGGCCGATCGCAAG
GAGGGCATGACCGCTTTCGCCGAGAAGCGCCCTGCCAAGTTTACCAACGA
GGCAAGCTTTCTAGACCAT
BO06865.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6543-RA | 888 | CG6543-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
CG6543-RB | 888 | CG6543-PB | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6543-RA | 1051 | CG6543-RA | 61..945 | 17..901 | 4425 | 100 | Plus |
CG6543-RB | 1124 | CG6543-RB | 134..1018 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13853180..13853905 | 839..114 | 3630 | 100 | Minus |
2R | 25286936 | 2R | 13854102..13854198 | 113..17 | 485 | 100 | Minus |
2R | 25286936 | 2R | 13853053..13853116 | 901..838 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:08:33 has no hits.
BO06865.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:24 Download gff for
BO06865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RA | 1..888 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:26 Download gff for
BO06865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RA | 68..965 | 8..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:38 Download gff for
BO06865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RB | 134..1018 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:24 Download gff for
BO06865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RA | 68..965 | 8..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:05 Download gff for
BO06865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6543-RB | 134..1018 | 17..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:05 Download gff for
BO06865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13853051..13853115 | 839..903 | 96 | <- | Minus |
2R | 13853181..13853905 | 114..838 | 100 | <- | Minus |
2R | 13854102..13854198 | 17..113 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:38 Download gff for
BO06865.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9740556..9740620 | 839..903 | 96 | <- | Minus |
arm_2R | 9740686..9741410 | 114..838 | 100 | <- | Minus |
arm_2R | 9741607..9741703 | 17..113 | 100 | | Minus |
BO06865.pep Sequence
Translation from 16 to 919
> BO06865.pep
MANIAKIFASRAQCVLQAAARQPQVATRFSSSSTNNNWEYIKTEVAGEGK
NVGVITLNRPKALNALCNGLMKELSTALQQFSKDKTISAIVLTGSEKAFA
AGADIKEMVGNTYSQCIQGNFLNDWTEVARTQKPIIAAVNGYALGGGCEL
AMMCDIIYAGDKAKFGQPEIALGTIPGAGGTQRLTRVVGKSKAMEMCLTG
NMIGAQEAEKLGLASKVVPADQLLGEAVKLGEKIGTHSNLIVQLCKEAVN
TAYETTLQEGLKFERRTFHATFSTADRKEGMTAFAEKRPAKFTNEASFLD
H
BO06865.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6543-PA | 295 | CG6543-PA | 1..295 | 1..295 | 1497 | 100 | Plus |
CG6543-PB | 295 | CG6543-PB | 1..295 | 1..295 | 1497 | 100 | Plus |
CG8778-PA | 299 | CG8778-PA | 7..299 | 11..295 | 376 | 34.5 | Plus |
CG6984-PA | 285 | CG6984-PA | 38..285 | 48..295 | 297 | 28.9 | Plus |
CG5844-PA | 378 | CG5844-PA | 47..269 | 42..269 | 259 | 29.7 | Plus |