Clone BO06865 Report

Search the DGRC for BO06865

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG6543-RA
Protein status:BO06865.pep: validated full length
Sequenced Size:919

Clone Sequence Records

BO06865.3prime Sequence

895 bp (815 high quality bases) assembled on 2005-12-03

> BO06865.3prime
ATGGTCTAGAAAGCTTGCCTCGTTGGTAAACTTGGCAGGGCGCTTCTCGG
CGAAAGCGGTCATGCCCTCCTTGCGATCGGCCGTGGAGAACGTGGCATGG
AAGGTGCGACGCTCGAACTTCAGGCCCTCTTGGAGAGTGGTCTCGTAAGC
CGTGTTAACCGCCTCCTTGCACAGCTGCACGATCAGATTGGAGTGGGTGC
CGATCTTCTCGCCCAGCTTGACGGCCTCGCCCAATAACTGGTCGGCGGGC
ACCACCTTGCTGGCCAGACCCAGCTTCTCAGCCTCCTGGGCGCCGATCAT
ATTGCCGGTGAGGCACATTTCCATGGCCTTGGACTTGCCAACGACGCGGG
TCAGACGCTGGGTGCCACCGGCACCGGGAATGGTGCCCAGGGCAATTTCA
GGCTGACCAAACTTGGCCTTGTCACCGGCATATATGATGTCGCACATCAT
GGCCAGCTCACAGCCACCGCCCAAGGCGTAACCATTCACGGCAGCAATGA
TGGGCTTCTGGGTGCGGGCCACCTCTGTCCAGTCGTTCAAGAAGTTGCCC
TGGATGCACTGCGAGTAGGTGTTGCCCACCATCTCCTTAATATCAGCGCC
AGCGGCGAAGGCCTTCTCGCTGCCCGTCAAAACGATGGCGGAGATGGTCT
TATCCTTGCTGAATTGCTGCAATGCGGTGGACAGCTCCTTCATCAGGCCA
TTGCAGAGGGCATTCAGGGCCTTGGGGCGGTTCAGGGTGATCACGCCTAC
GTTCTTGCCCTCGCCGGCCACTTCGGTCTTGATGTACTCCCAGTTGTTGT
TGGTGGAGGAGCTGCTGAAACGGGTGGCCACCTGTGGCTGACGGGCGGCT
GCCTGCAGGACGCACTGGGCGCGGCTAGCGAAGATCTTAGCAATG

BO06865.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6543-PB 888 CG6543-RB 9..885 895..19 4385 100 Minus
CG6543-PA 888 CG6543-RA 9..885 895..19 4385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6543-RA 1051 CG6543-RA 69..945 895..19 4385 100 Minus
CG6543-RB 1124 CG6543-RB 142..1018 895..19 4385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13853180..13853905 81..806 3630 100 Plus
2R 25286936 2R 13854102..13854190 807..895 445 100 Plus
2R 25286936 2R 13853053..13853116 19..82 320 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:27:55 has no hits.

BO06865.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:56 Download gff for BO06865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-PB 9..888 15..895 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:50 Download gff for BO06865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-PA 9..888 15..895 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:01:38 Download gff for BO06865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-RB 142..1021 15..895 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:37:13 Download gff for BO06865.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-RB 142..1021 15..895 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:37:13 Download gff for BO06865.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13853049..13853115 15..81 97 <- Plus
2R 13853181..13853905 82..806 100 <- Plus
2R 13854102..13854190 807..895 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:01:38 Download gff for BO06865.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9740554..9740620 15..81 97 <- Plus
arm_2R 9740686..9741410 82..806 100 <- Plus
arm_2R 9741607..9741695 807..895 100   Plus

BO06865.5prime Sequence

917 bp (871 high quality bases) assembled on 2005-12-03

> BO06865.5prime
GAAGTTATCAGTCGACATGGCCAACATTGCTAAGATCTTCGCTAGCCGCG
CCCAGTGCGTCCTGCAGGCAGCCGCCCGTCAGCCACAGGTGGCCACCCGT
TTCAGCAGCTCCTCCACCAACAACAACTGGGAGTACATCAAGACCGAAGT
GGCCGGCGAGGGCAAGAACGTAGGCGTGATCACCCTGAACCGCCCCAAGG
CCCTGAATGCCCTCTGCAATGGCCTGATGAAGGAGCTGTCCACCGCATTG
CAGCAATTCAGCAAGGATAAGACCATCTCCGCCATCGTTTTGACGGGCAG
CGAGAAGGCCTTCGCCGCTGGCGCTGATATTAAGGAGATGGTGGGCAACA
CCTACTCGCAGTGCATCCAGGGCAACTTCTTGAACGACTGGACAGAGGTG
GCCCGCACCCAGAAGCCCATCATTGCTGCCGTGAATGGTTACGCCTTGGG
CGGTGGCTGTGAGCTGGCCATGATGTGCGACATCATATATGCCGGTGACA
AGGCCAAGTTTGGTCAGCCTGAAATTGCCCTGGGCACCATTCCCGGTGCC
GGTGGCACCCAGCGTCTGACCCGCGTCGTTGGCAAGTCCAAGGCCATGGA
AATGTGCCTCACCGGCAATATGATCGGCGCCCAGGAGGCTGAGAAGCTGG
GTCTGGCCAGCAAGGTGGTGCCCGCCGACCAGTTATTGGGCGAGGCCGTC
AAGCTGGGCGAGAAGATCGGCACCCACTCCAATCTGATCGTGCAGCTGTG
CAAGGAGGCGGTTAACACGGCTTACGAGACCACTCTCCAAGAGGGCCTGA
AGTTCGAGCGTCGCACCTTCCATGCCACGTTCTCCACGGCCGATCGCAAG
GAGGGCATGACCGCTTTCGCCGAGAAGCGCCCTGCCAAGTTTACCAACGA
GGCAAGCTTTCTAGACC

BO06865.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6543-PB 888 CG6543-RB 1..885 17..901 4425 100 Plus
CG6543-PA 888 CG6543-RA 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6543-RA 1051 CG6543-RA 61..945 17..901 4425 100 Plus
CG6543-RB 1124 CG6543-RB 134..1018 17..901 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13853180..13853905 839..114 3630 100 Minus
2R 25286936 2R 13854102..13854198 113..17 485 100 Minus
2R 25286936 2R 13853053..13853116 901..838 320 100 Minus
Blast to na_te.dros performed on 2015-02-12 09:51:09 has no hits.

BO06865.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:57 Download gff for BO06865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-PB 1..888 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:52 Download gff for BO06865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-PA 1..888 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:42:28 Download gff for BO06865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-RB 124..1021 8..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:50:29 Download gff for BO06865.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6543-RB 124..1021 8..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:50:29 Download gff for BO06865.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13853049..13853115 839..905 97 <- Minus
2R 13853181..13853905 114..838 100 <- Minus
2R 13854102..13854208 8..113 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:42:28 Download gff for BO06865.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9740554..9740620 839..905 97 <- Minus
arm_2R 9740686..9741410 114..838 100 <- Minus
arm_2R 9741607..9741713 8..113 96   Minus

BO06865.complete Sequence

919 bp (919 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630569

> BO06865.complete
GAAGTTATCAGTCGACATGGCCAACATTGCTAAGATCTTCGCTAGCCGCG
CCCAGTGCGTCCTGCAGGCAGCCGCCCGTCAGCCACAGGTGGCCACCCGT
TTCAGCAGCTCCTCCACCAACAACAACTGGGAGTACATCAAGACCGAAGT
GGCCGGCGAGGGCAAGAACGTAGGCGTGATCACCCTGAACCGCCCCAAGG
CCCTGAATGCCCTCTGCAATGGCCTGATGAAGGAGCTGTCCACCGCATTG
CAGCAATTCAGCAAGGATAAGACCATCTCCGCCATCGTTTTGACGGGCAG
CGAGAAGGCCTTCGCCGCTGGCGCTGATATTAAGGAGATGGTGGGCAACA
CCTACTCGCAGTGCATCCAGGGCAACTTCTTGAACGACTGGACAGAGGTG
GCCCGCACCCAGAAGCCCATCATTGCTGCCGTGAATGGTTACGCCTTGGG
CGGTGGCTGTGAGCTGGCCATGATGTGCGACATCATATATGCCGGTGACA
AGGCCAAGTTTGGTCAGCCTGAAATTGCCCTGGGCACCATTCCCGGTGCC
GGTGGCACCCAGCGTCTGACCCGCGTCGTTGGCAAGTCCAAGGCCATGGA
AATGTGCCTCACCGGCAATATGATCGGCGCCCAGGAGGCTGAGAAGCTGG
GTCTGGCCAGCAAGGTGGTGCCCGCCGACCAGTTATTGGGCGAGGCCGTC
AAGCTGGGCGAGAAGATCGGCACCCACTCCAATCTGATCGTGCAGCTGTG
CAAGGAGGCGGTTAACACGGCTTACGAGACCACTCTCCAAGAGGGCCTGA
AGTTCGAGCGTCGCACCTTCCATGCCACGTTCTCCACGGCCGATCGCAAG
GAGGGCATGACCGCTTTCGCCGAGAAGCGCCCTGCCAAGTTTACCAACGA
GGCAAGCTTTCTAGACCAT

BO06865.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6543-RA 888 CG6543-PA 1..885 17..901 4425 100 Plus
CG6543-RB 888 CG6543-PB 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6543-RA 1051 CG6543-RA 61..945 17..901 4425 100 Plus
CG6543-RB 1124 CG6543-RB 134..1018 17..901 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13853180..13853905 839..114 3630 100 Minus
2R 25286936 2R 13854102..13854198 113..17 485 100 Minus
2R 25286936 2R 13853053..13853116 901..838 320 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:08:33 has no hits.

BO06865.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:24 Download gff for BO06865.complete
Subject Subject Range Query Range Percent Splice Strand
CG6543-RA 1..888 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:26 Download gff for BO06865.complete
Subject Subject Range Query Range Percent Splice Strand
CG6543-RA 68..965 8..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:38 Download gff for BO06865.complete
Subject Subject Range Query Range Percent Splice Strand
CG6543-RB 134..1018 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:24 Download gff for BO06865.complete
Subject Subject Range Query Range Percent Splice Strand
CG6543-RA 68..965 8..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:05 Download gff for BO06865.complete
Subject Subject Range Query Range Percent Splice Strand
CG6543-RB 134..1018 17..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:05 Download gff for BO06865.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13853051..13853115 839..903 96 <- Minus
2R 13853181..13853905 114..838 100 <- Minus
2R 13854102..13854198 17..113 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:38 Download gff for BO06865.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9740556..9740620 839..903 96 <- Minus
arm_2R 9740686..9741410 114..838 100 <- Minus
arm_2R 9741607..9741703 17..113 100   Minus

BO06865.pep Sequence

Translation from 16 to 919

> BO06865.pep
MANIAKIFASRAQCVLQAAARQPQVATRFSSSSTNNNWEYIKTEVAGEGK
NVGVITLNRPKALNALCNGLMKELSTALQQFSKDKTISAIVLTGSEKAFA
AGADIKEMVGNTYSQCIQGNFLNDWTEVARTQKPIIAAVNGYALGGGCEL
AMMCDIIYAGDKAKFGQPEIALGTIPGAGGTQRLTRVVGKSKAMEMCLTG
NMIGAQEAEKLGLASKVVPADQLLGEAVKLGEKIGTHSNLIVQLCKEAVN
TAYETTLQEGLKFERRTFHATFSTADRKEGMTAFAEKRPAKFTNEASFLD
H

BO06865.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6543-PA 295 CG6543-PA 1..295 1..295 1497 100 Plus
CG6543-PB 295 CG6543-PB 1..295 1..295 1497 100 Plus
CG8778-PA 299 CG8778-PA 7..299 11..295 376 34.5 Plus
CG6984-PA 285 CG6984-PA 38..285 48..295 297 28.9 Plus
CG5844-PA 378 CG5844-PA 47..269 42..269 259 29.7 Plus