Clone Sequence Records
BO06866.3prime Sequence
874 bp (802 high quality bases) assembled on 2005-12-03
> BO06866.3prime
ATGGTCTAGAAAGCTTGCGCTGCTCCTCGCCTTCTTGTTGGCCTTGATCA
GCTTGGCCTTCAGGGCCTTCACGTCCACCTTGCTGGAGGAGGAGCCATCC
TCCTTCTTCCGACTTGAAGCAGCTGACTCCTCCGTGGGCGGGACAAAGTC
CTTGTTTCGGCGTTCGTCCTGGCGCTTGGCCGCCTCCTTCTGCTTTTCGG
TGCGCTCCTGGTTGCGCTTCGCTTGCTTCTGCTCCTGGTTGAGGAAGTAC
TCTCCGCTGGCCAGCTGCTTGTCCACCTTGCTCTCCGGCTGGCTGGGCGG
GAATGGGGTGTACTCCTTCTTTTGCTTCTTGACCTTCGGCTGCTTGCGTT
TGCTAATGTTTTTGTTCTTGAACTTGGGCAGGAATCGGGACCAGTCCTCG
TTGGCCAGACGCGGATCCTTCATCAGCTCCCGCTTGATCATCAGAGCCTT
AATGTTGTATATGGGGTGCACATTGTTCATGGTCTCCAGGACTATATCCC
GCACCTGCTGAAGGCCCTTGTAAGGACCCAAGGCGGAGACTGTGTTTCCT
TGAACCAAAACGTAGCAATCGGTGAGCAGTTCAATGGACTTAAGGGTGGC
GCCGTTAGGTCCGATCAAACGCTGTCGCCGCTTCACGAACTTCTCCTTCT
TGTGCACAAGGTTTCCGATTTTGATGATGTCACACCCAATGTCGTCCTGC
AGGACCCGCTTGGCCTGCTCGAAGGGAACACTTCTGGCCATCAGCTTGAT
CATATCCCGCGCCTTGATGATGATGTAGGGATCCCAGGTCTTGCGACTGG
TCTTCACCACCATGCTCCCCTCCATCAAATCTAGCTCCGCCTTCAGGTGG
TGCTCCCGCCAGCACTGCTCCACC
BO06866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4258-PA | 1038 | dbe-RA | 198..1035 | 856..19 | 4190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dbe-RA | 1185 | CG4258-RA | 261..1116 | 874..19 | 4235 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:11:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 868742..869597 | 19..874 | 4235 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:11:15 has no hits.
BO06866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:58 Download gff for
BO06866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbe-PA | 180..1038 | 16..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:53 Download gff for
BO06866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4258-PA | 180..1038 | 16..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:30 Download gff for
BO06866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbe-RA | 261..1127 | 9..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:41:06 Download gff for
BO06866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbe-RA | 261..1127 | 9..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:41:06 Download gff for
BO06866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 868731..869597 | 9..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:30 Download gff for
BO06866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 868731..869597 | 9..874 | 99 | | Plus |
BO06866.5prime Sequence
825 bp (813 high quality bases) assembled on 2005-12-03
> BO06866.5prime
GAAGTTATCAGTCGACATGAGCGAAAGTGAAGCGGAGGAGACCAAAATCA
GCACCGAGCCGGTGGACAATGCGTGGTCCATGAAGATCCCTGCCTTCAGG
CAGGAGGACAACCCGCATGGGATGGTGGAGGAGAGCTCCTTCGCCACGCT
GTTTCCCAAATATCGGGAGCGCTATCTTAAGGAGGTTTGGCCTCTGGTGG
AGCAGTGCTTGGCGGAGCACCACCTGAAGGCGGAGCTAGATTTGATGGAG
GGGAGCATGGTGGTGAAGACCAGTCGCAAGACCTGGGATCCCTACATCAT
CATCAAGGCGCGGGATATGATCAAGCTGATGGCCAGAAGTGTTCCCTTCG
AGCAGGCCAAGCGGGTCCTGCAGGACGACATTGGGTGTGACATCATCAAA
ATCGGAAACCTTGTGCACAAGAAGGAGAAGTTCGTGAAGCGGCGACAGCG
TTTGATCGGACCTAACGGCGCCACCCTTAAGTCCATTGAACTGCTCACCG
ATTGCTACGTTTTGGTTCAAGGAAACACAGTCTCCGCCTTGGGTCCTTAC
AAGGGCCTTCAGCAGGTGCGGGATATAGTCCTGGAGACCATGAACAATGT
GCACCCCATATACAACATTAAGGCTCTGATGATCAAGCGGGAGCTGATGA
AGGATCCGCGTCTGGCCAACGAGGACTGGTCCCGATTCCTGCCCAAGTTC
AAGAACAAAAACATTAGCAAACGCAAGCAGCCGAAGGTCAAGAAGCAAAA
GAAGGAGTACACCCCATTCCCGCCCAGCCAGCCGGAGAGCAAGGTGGACA
AGCAGCTGGCCAGCGGAGAGTACTT
BO06866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4258-PA | 1038 | dbe-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dbe-RA | 1185 | CG4258-RA | 82..890 | 17..825 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 868968..869776 | 825..17 | 4045 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:34:13 has no hits.
BO06866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:59 Download gff for
BO06866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbe-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:54 Download gff for
BO06866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4258-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:48 Download gff for
BO06866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbe-RA | 75..890 | 10..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:32 Download gff for
BO06866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbe-RA | 75..890 | 10..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:32 Download gff for
BO06866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 868968..869783 | 10..825 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:48 Download gff for
BO06866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 868968..869783 | 10..825 | 99 | | Minus |
BO06866.complete Sequence
1069 bp (1069 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630570
> BO06866.complete
GAAGTTATCAGTCGACATGAGCGAAAGTGAAGCGGAGGAGACCAAAATCA
GCACCGAGCCGGTGGACAATGCGTGGTCCATGAAGATCCCTGCCTTCAGG
CAGGAGGACAACCCGCATGGGATGGTGGAGGAGAGCTCCTTCGCCACGCT
GTTTCCCAAATATCGGGAGCGCTATCTTAAGGAGGTTTGGCCTCTGGTGG
AGCAGTGCTTGGCGGAGCACCACCTGAAGGCGGAGCTAGATTTGATGGAG
GGGAGCATGGTGGTGAAGACCAGTCGCAAGACCTGGGATCCCTACATCAT
CATCAAGGCGCGGGATATGATCAAGCTGATGGCCAGAAGTGTTCCCTTCG
AGCAGGCCAAGCGGGTCCTGCAGGACGACATTGGGTGTGACATCATCAAA
ATCGGAAACCTTGTGCACAAGAAGGAGAAGTTCGTGAAGCGGCGACAGCG
TTTGATCGGACCTAACGGCGCCACCCTTAAGTCCATTGAACTGCTCACCG
ATTGCTACGTTTTGGTTCAAGGAAACACAGTCTCCGCCTTGGGTCCTTAC
AAGGGCCTTCAGCAGGTGCGGGATATAGTCCTGGAGACCATGAACAATGT
GCACCCCATATACAACATTAAGGCTCTGATGATCAAGCGGGAGCTGATGA
AGGATCCGCGTCTGGCCAACGAGGACTGGTCCCGATTCCTGCCCAAGTTC
AAGAACAAAAACATTAGCAAACGCAAGCAGCCGAAGGTCAAGAAGCAAAA
GAAGGAGTACACCCCATTCCCGCCCAGCCAGCCGGAGAGCAAGGTGGACA
AGCAGCTGGCCAGCGGAGAGTACTTCCTCAACCAGGAGCAGAAGCAAGCG
AAGCGCAACCAGGAGCGCACCGAAAAGCAGAAGGAGGCGGCCAAGCGCCA
GGACGAACGCCGAAACAAGGACTTTGTCCCGCCCACGGAGGAGTCAGCTG
CTTCAAGTCGGAAGAAGGAGGATGGCTCCTCCTCCAGCAAGGTGGACGTG
AAGGCCCTGAAGGCCAAGCTGATCAAGGCCAACAAGAAGGCGAGGAGCAG
CGCAAGCTTTCTAGACCAT
BO06866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dbe-RA | 1038 | CG4258-PA | 1..1035 | 17..1051 | 5175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dbe-RA | 1185 | CG4258-RA | 82..1116 | 17..1051 | 5175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 868742..869776 | 1051..17 | 5175 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:41:33 has no hits.
BO06866.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:25 Download gff for
BO06866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbe-RA | 1..1038 | 17..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:27 Download gff for
BO06866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbe-RA | 129..1181 | 10..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:34 Download gff for
BO06866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbe-RA | 82..1116 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:25 Download gff for
BO06866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbe-RA | 129..1181 | 10..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:53 Download gff for
BO06866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbe-RA | 82..1116 | 17..1053 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:53 Download gff for
BO06866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 868739..869776 | 17..1053 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:34 Download gff for
BO06866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 868739..869776 | 17..1053 | 99 | | Minus |
BO06866.pep Sequence
Translation from 16 to 1069
> BO06866.pep
MSESEAEETKISTEPVDNAWSMKIPAFRQEDNPHGMVEESSFATLFPKYR
ERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVKTSRKTWDPYIIIKARD
MIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPN
GATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNNVHPIYN
IKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTP
FPPSQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRN
KDFVPPTEESAASSRKKEDGSSSSKVDVKALKAKLIKANKKARSSASFLD
H
BO06866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dbe-PA | 345 | CG4258-PA | 1..345 | 1..345 | 1770 | 100 | Plus |