Clone BO06866 Report

Search the DGRC for BO06866

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:66
Vector:pDNR-Dual
Associated Gene/Transcriptdbe-RA
Protein status:BO06866.pep: validated full length
Sequenced Size:1069

Clone Sequence Records

BO06866.3prime Sequence

874 bp (802 high quality bases) assembled on 2005-12-03

> BO06866.3prime
ATGGTCTAGAAAGCTTGCGCTGCTCCTCGCCTTCTTGTTGGCCTTGATCA
GCTTGGCCTTCAGGGCCTTCACGTCCACCTTGCTGGAGGAGGAGCCATCC
TCCTTCTTCCGACTTGAAGCAGCTGACTCCTCCGTGGGCGGGACAAAGTC
CTTGTTTCGGCGTTCGTCCTGGCGCTTGGCCGCCTCCTTCTGCTTTTCGG
TGCGCTCCTGGTTGCGCTTCGCTTGCTTCTGCTCCTGGTTGAGGAAGTAC
TCTCCGCTGGCCAGCTGCTTGTCCACCTTGCTCTCCGGCTGGCTGGGCGG
GAATGGGGTGTACTCCTTCTTTTGCTTCTTGACCTTCGGCTGCTTGCGTT
TGCTAATGTTTTTGTTCTTGAACTTGGGCAGGAATCGGGACCAGTCCTCG
TTGGCCAGACGCGGATCCTTCATCAGCTCCCGCTTGATCATCAGAGCCTT
AATGTTGTATATGGGGTGCACATTGTTCATGGTCTCCAGGACTATATCCC
GCACCTGCTGAAGGCCCTTGTAAGGACCCAAGGCGGAGACTGTGTTTCCT
TGAACCAAAACGTAGCAATCGGTGAGCAGTTCAATGGACTTAAGGGTGGC
GCCGTTAGGTCCGATCAAACGCTGTCGCCGCTTCACGAACTTCTCCTTCT
TGTGCACAAGGTTTCCGATTTTGATGATGTCACACCCAATGTCGTCCTGC
AGGACCCGCTTGGCCTGCTCGAAGGGAACACTTCTGGCCATCAGCTTGAT
CATATCCCGCGCCTTGATGATGATGTAGGGATCCCAGGTCTTGCGACTGG
TCTTCACCACCATGCTCCCCTCCATCAAATCTAGCTCCGCCTTCAGGTGG
TGCTCCCGCCAGCACTGCTCCACC

BO06866.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4258-PA 1038 dbe-RA 198..1035 856..19 4190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
dbe-RA 1185 CG4258-RA 261..1116 874..19 4235 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 868742..869597 19..874 4235 99.6 Plus
Blast to na_te.dros performed on 2015-02-13 16:11:15 has no hits.

BO06866.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:58 Download gff for BO06866.3prime
Subject Subject Range Query Range Percent Splice Strand
dbe-PA 180..1038 16..874 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:53 Download gff for BO06866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4258-PA 180..1038 16..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:09:30 Download gff for BO06866.3prime
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 261..1127 9..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:41:06 Download gff for BO06866.3prime
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 261..1127 9..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:41:06 Download gff for BO06866.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 868731..869597 9..874 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:09:30 Download gff for BO06866.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 868731..869597 9..874 99   Plus

BO06866.5prime Sequence

825 bp (813 high quality bases) assembled on 2005-12-03

> BO06866.5prime
GAAGTTATCAGTCGACATGAGCGAAAGTGAAGCGGAGGAGACCAAAATCA
GCACCGAGCCGGTGGACAATGCGTGGTCCATGAAGATCCCTGCCTTCAGG
CAGGAGGACAACCCGCATGGGATGGTGGAGGAGAGCTCCTTCGCCACGCT
GTTTCCCAAATATCGGGAGCGCTATCTTAAGGAGGTTTGGCCTCTGGTGG
AGCAGTGCTTGGCGGAGCACCACCTGAAGGCGGAGCTAGATTTGATGGAG
GGGAGCATGGTGGTGAAGACCAGTCGCAAGACCTGGGATCCCTACATCAT
CATCAAGGCGCGGGATATGATCAAGCTGATGGCCAGAAGTGTTCCCTTCG
AGCAGGCCAAGCGGGTCCTGCAGGACGACATTGGGTGTGACATCATCAAA
ATCGGAAACCTTGTGCACAAGAAGGAGAAGTTCGTGAAGCGGCGACAGCG
TTTGATCGGACCTAACGGCGCCACCCTTAAGTCCATTGAACTGCTCACCG
ATTGCTACGTTTTGGTTCAAGGAAACACAGTCTCCGCCTTGGGTCCTTAC
AAGGGCCTTCAGCAGGTGCGGGATATAGTCCTGGAGACCATGAACAATGT
GCACCCCATATACAACATTAAGGCTCTGATGATCAAGCGGGAGCTGATGA
AGGATCCGCGTCTGGCCAACGAGGACTGGTCCCGATTCCTGCCCAAGTTC
AAGAACAAAAACATTAGCAAACGCAAGCAGCCGAAGGTCAAGAAGCAAAA
GAAGGAGTACACCCCATTCCCGCCCAGCCAGCCGGAGAGCAAGGTGGACA
AGCAGCTGGCCAGCGGAGAGTACTT

BO06866.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4258-PA 1038 dbe-RA 1..809 17..825 4045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
dbe-RA 1185 CG4258-RA 82..890 17..825 4045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 868968..869776 825..17 4045 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:34:13 has no hits.

BO06866.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:01:59 Download gff for BO06866.5prime
Subject Subject Range Query Range Percent Splice Strand
dbe-PA 1..809 17..825 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:54 Download gff for BO06866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4258-PA 1..809 17..825 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:43:48 Download gff for BO06866.5prime
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 75..890 10..825 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:32 Download gff for BO06866.5prime
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 75..890 10..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:32 Download gff for BO06866.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 868968..869783 10..825 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:43:48 Download gff for BO06866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 868968..869783 10..825 99   Minus

BO06866.complete Sequence

1069 bp (1069 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630570

> BO06866.complete
GAAGTTATCAGTCGACATGAGCGAAAGTGAAGCGGAGGAGACCAAAATCA
GCACCGAGCCGGTGGACAATGCGTGGTCCATGAAGATCCCTGCCTTCAGG
CAGGAGGACAACCCGCATGGGATGGTGGAGGAGAGCTCCTTCGCCACGCT
GTTTCCCAAATATCGGGAGCGCTATCTTAAGGAGGTTTGGCCTCTGGTGG
AGCAGTGCTTGGCGGAGCACCACCTGAAGGCGGAGCTAGATTTGATGGAG
GGGAGCATGGTGGTGAAGACCAGTCGCAAGACCTGGGATCCCTACATCAT
CATCAAGGCGCGGGATATGATCAAGCTGATGGCCAGAAGTGTTCCCTTCG
AGCAGGCCAAGCGGGTCCTGCAGGACGACATTGGGTGTGACATCATCAAA
ATCGGAAACCTTGTGCACAAGAAGGAGAAGTTCGTGAAGCGGCGACAGCG
TTTGATCGGACCTAACGGCGCCACCCTTAAGTCCATTGAACTGCTCACCG
ATTGCTACGTTTTGGTTCAAGGAAACACAGTCTCCGCCTTGGGTCCTTAC
AAGGGCCTTCAGCAGGTGCGGGATATAGTCCTGGAGACCATGAACAATGT
GCACCCCATATACAACATTAAGGCTCTGATGATCAAGCGGGAGCTGATGA
AGGATCCGCGTCTGGCCAACGAGGACTGGTCCCGATTCCTGCCCAAGTTC
AAGAACAAAAACATTAGCAAACGCAAGCAGCCGAAGGTCAAGAAGCAAAA
GAAGGAGTACACCCCATTCCCGCCCAGCCAGCCGGAGAGCAAGGTGGACA
AGCAGCTGGCCAGCGGAGAGTACTTCCTCAACCAGGAGCAGAAGCAAGCG
AAGCGCAACCAGGAGCGCACCGAAAAGCAGAAGGAGGCGGCCAAGCGCCA
GGACGAACGCCGAAACAAGGACTTTGTCCCGCCCACGGAGGAGTCAGCTG
CTTCAAGTCGGAAGAAGGAGGATGGCTCCTCCTCCAGCAAGGTGGACGTG
AAGGCCCTGAAGGCCAAGCTGATCAAGGCCAACAAGAAGGCGAGGAGCAG
CGCAAGCTTTCTAGACCAT

BO06866.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
dbe-RA 1038 CG4258-PA 1..1035 17..1051 5175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
dbe-RA 1185 CG4258-RA 82..1116 17..1051 5175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 868742..869776 1051..17 5175 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:41:33 has no hits.

BO06866.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:25 Download gff for BO06866.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 1..1038 17..1054 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:27 Download gff for BO06866.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 129..1181 10..1061 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:34 Download gff for BO06866.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 82..1116 17..1053 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:25 Download gff for BO06866.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 129..1181 10..1061 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:53 Download gff for BO06866.complete
Subject Subject Range Query Range Percent Splice Strand
dbe-RA 82..1116 17..1053 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:53 Download gff for BO06866.complete
Subject Subject Range Query Range Percent Splice Strand
2L 868739..869776 17..1053 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:34 Download gff for BO06866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 868739..869776 17..1053 99   Minus

BO06866.pep Sequence

Translation from 16 to 1069

> BO06866.pep
MSESEAEETKISTEPVDNAWSMKIPAFRQEDNPHGMVEESSFATLFPKYR
ERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVKTSRKTWDPYIIIKARD
MIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPN
GATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNNVHPIYN
IKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTP
FPPSQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRN
KDFVPPTEESAASSRKKEDGSSSSKVDVKALKAKLIKANKKARSSASFLD
H

BO06866.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
dbe-PA 345 CG4258-PA 1..345 1..345 1770 100 Plus