Clone BO06868 Report

Search the DGRC for BO06868

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:68
Well:68
Vector:pDNR-Dual
Associated Gene/Transcriptl(1)G0320-RA
Protein status:BO06868.pep: validated full length
Sequenced Size:940

Clone Sequence Records

BO06868.3prime Sequence

867 bp (824 high quality bases) assembled on 2005-12-03

> BO06868.3prime
ATGGTCTAGAAAGCTTGCATCATCGCCAGCGGAACGCTTGACCTTGCGCT
GCTTGGGACTCTGCTGGCTGGCCGCCTTGGGACTGGCCGGCTTGGTGGGC
TTGGGCGAGGTCTTGGGCGTTTTGGACTTGGGCGGCGACTTCTGCAGCGC
ACGCAGCGTCTCCTGTGGCACCCAATCGTAGTCGATGGTGCTGTCGTTGG
CCGTGCCGGTTTCGATCACCTTCTTGGCAGCGGCACGCTTCCTCTTGCCA
GAGCTGCCGAGCAGATATTGCTGTCCGATGACCAGTAGCAGGACCACAAT
GCCCGCCAGCAGGACGTACAGGAAGAAAGTCTCGCCATCCAGACCCTCAT
CGACCTCCGAAATCAGAACGGTCTCATTGAACACGGCCTCGTTGTACTGA
ATACCATTGGCATCGCGGTAGGCCAGTGCAATGTTCAGTCCAAATGGACG
GCCGGCAAACTGATCCGAGGGCAGGAAGGTGTACGACACGGTCGACTCAA
AGCCGGGCTTCACCTCACGATTGTAGGCCACCGCCGAGAAGTTCTGGATG
AAGTAGTTGAAGTCCATGGGATAGCGGAAGGAGGCCTCCACCGTCTCGAT
CACGAATTCCTCGGCTCCCTTGTTGGTGAATCCAATCAGGAACTCGACGG
GTTTGCCGCCGGGCAGATCCAGCTGCTGGCCAGGTGTGTACAGGGGTTTC
GTGAATAACAGATAGGTGTCCGCATTCGGCGAACTGCTGCTGCCCGTGTC
GCTATCCTCGTCCGCTTCTGCATCCTCGCCAGTAACGGCACCCTCCTCGC
CCTCCACGTCCACCAGGTCGTCCTCCACGGCCTCGGCGGCATAGGCTCCC
AACTTGTTGGGCGCCGA

BO06868.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32701-PA 909 l(1)G0320-RA 58..906 867..19 4220 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0320-RB 1854 CG32701-RB 204..1052 867..19 4230 99.9 Minus
l(1)G0320-RA 1309 CG32701-RA 293..1141 867..19 4230 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9551942..9552783 19..860 4195 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 05:07:50 has no hits.

BO06868.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:02 Download gff for BO06868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32701-PA 59..909 15..866 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:57 Download gff for BO06868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32701-PA 59..909 15..866 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:17 Download gff for BO06868.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 205..1058 11..866 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:31 Download gff for BO06868.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 294..1147 11..866 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:31 Download gff for BO06868.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9551936..9552786 11..866 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:17 Download gff for BO06868.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9445969..9446819 11..866 99   Plus

BO06868.5prime Sequence

878 bp (826 high quality bases) assembled on 2005-12-03

> BO06868.5prime
GAAGTTATCAGTCGACATGAGGCATCTGATGTTCCTAATGCTGATGGTCC
TGCCCATCGTCATCTGCACCTTCTCGGCGCCCAACAAGTTTGGAGCCTAT
GCCGCCGAGGCCGTGGAGGACGACCTGGTGGACGTGGAGGGCGAGGAGGG
TGCCGTTACTGGCGAGGATGCAGAAGCGGACGAGGATAGCGACACGGGCA
GCAGCAGTTCGCCGAATGCGGACACCTATCTGTTATTCACGAAACCCCTG
TACACACCTGGCCAGCAGCTGGATCTGCCCGGCGGCAAACCCGTCGAGTT
CCTGATTGGATTCACCAACAAGGGAGCCGAGGAATTCGTGATCGAGACGG
TGGAGGCCTCCTTCCGCTATCCCATGGACTTCAACTACTTCATCCAGAAC
TTCTCGGCGGTGGCCTACAATCGTGAGGTGAAGCCCGGCTTTGAGTCGAC
CGTGTCGTACACCTTCCTGCCCTCGGATCAGTTTGCCGGCCGTCCATTTG
GACTGAACATTGCACTGGCCTACCGCGATGCCAATGGTATTCAGTACAAC
GAGGCCGTGTTCAATGAGACCGTTCTGATTTCGGAGGTCGATGAGGGTCT
GGATGGCGAGACTTTCTTCCTGTACGTCCTGCTGGCGGGCATTGTGGTCC
TGCTACTGGTCATCGGACAGCAATATCTGCTCGGCAGCTCTGGCAAGAGG
AAGCGTGCCGCTGCCAAGAAGGTGATCGAAACCGGCACGGCCAACGACAG
CACCATCGACTACGATTGGGTGCCACAGGAGACGCTGCGTGCGCTGCAGA
AGTCGCCGCCCAAGTCCAAAACGCCCAAGACCTCGCCCAAGCCCACCAAG
CCGGCCAGTCCCAAGGCGGCCAGCCAGC

BO06868.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32701-PA 909 l(1)G0320-RA 1..862 17..878 4310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0320-RB 1854 CG32701-RB 147..1008 17..878 4310 100 Plus
l(1)G0320-RA 1309 CG32701-RA 236..1097 17..878 4310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9551986..9552783 878..81 3990 100 Minus
X 23542271 X 9553452..9553515 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:07:54 has no hits.

BO06868.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:02:03 Download gff for BO06868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32701-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:59 Download gff for BO06868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32701-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:19 Download gff for BO06868.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 140..1008 9..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:42 Download gff for BO06868.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 229..1097 9..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:42 Download gff for BO06868.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9551986..9552783 81..878 100 <- Minus
X 9553452..9553522 9..80 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:19 Download gff for BO06868.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9446019..9446816 81..878 100 <- Minus
arm_X 9447485..9447555 9..80 94   Minus

BO06868.complete Sequence

940 bp (940 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630571

> BO06868.complete
GAAGTTATCAGTCGACATGAGGCATCTGATGTTCCTAATGCTGATGGTCC
TGCCCATCGTCATCTGCACCTTCTCGGCGCCCAACAAGTTTGGAGCCTAT
GCCGCCGAGGCCGTGGAGGACGACCTGGTGGACGTGGAGGGCGAGGAGGG
TGCCGTTACTGGCGAGGATGCAGAAGCGGACGAGGATAGCGACACGGGCA
GCAGCAGTTCGCCGAATGCGGACACCTATCTGTTATTCACGAAACCCCTG
TACACACCTGGCCAGCAGCTGGATCTGCCCGGCGGCAAACCCGTCGAGTT
CCTGATTGGATTCACCAACAAGGGAGCCGAGGAATTCGTGATCGAGACGG
TGGAGGCCTCCTTCCGCTATCCCATGGACTTCAACTACTTCATCCAGAAC
TTCTCGGCGGTGGCCTACAATCGTGAGGTGAAGCCCGGCTTTGAGTCGAC
CGTGTCGTACACCTTCCTGCCCTCGGATCAGTTTGCCGGCCGTCCATTTG
GACTGAACATTGCACTGGCCTACCGCGATGCCAATGGTATTCAGTACAAC
GAGGCCGTGTTCAATGAGACCGTTCTGATTTCGGAGGTCGATGAGGGTCT
GGATGGCGAGACTTTCTTCCTGTACGTCCTGCTGGCGGGCATTGTGGTCC
TGCTACTGGTCATCGGACAGCAATATCTGCTCGGCAGCTCTGGCAAGAGG
AAGCGTGCCGCTGCCAAGAAGGTGATCGAAACCGGCACGGCCAACGACAG
CACCATCGACTACGATTGGGTGCCACAGGAGACGCTGCGTGCGCTGCAGA
AGTCGCCGCCCAAGTCCAAAACGCCCAAGACCTCGCCCAAGCCCACCAAG
CCGGCCAGTCCCAAGGCGGCCAGCCAGCAGAGTCCCAAGCAGCGCAAGGT
CAAGCGTTCCGCTGGCGATGATGCAAGCTTTCTAGACCAT

BO06868.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0320-RB 909 CG32701-PB 1..906 17..922 4530 100 Plus
l(1)G0320-RA 909 CG32701-PA 1..906 17..922 4530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0320-RB 1854 CG32701-RB 147..1052 17..922 4530 100 Plus
l(1)G0320-RA 1309 CG32701-RA 236..1141 17..922 4530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9551942..9552783 922..81 4210 100 Minus
X 23542271 X 9553452..9553515 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:55:10 has no hits.

BO06868.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:20:26 Download gff for BO06868.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 1..909 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:43:29 Download gff for BO06868.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 149..1067 9..930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:21 Download gff for BO06868.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 147..1052 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:20:27 Download gff for BO06868.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 149..1067 9..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:02 Download gff for BO06868.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0320-RA 236..1141 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:02 Download gff for BO06868.complete
Subject Subject Range Query Range Percent Splice Strand
X 9551940..9552783 81..924 99 <- Minus
X 9553452..9553515 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:21 Download gff for BO06868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9445973..9446816 81..924 99 <- Minus
arm_X 9447485..9447548 17..80 100   Minus

BO06868.pep Sequence

Translation from 16 to 940

> BO06868.pep
MRHLMFLMLMVLPIVICTFSAPNKFGAYAAEAVEDDLVDVEGEEGAVTGE
DAEADEDSDTGSSSSPNADTYLLFTKPLYTPGQQLDLPGGKPVEFLIGFT
NKGAEEFVIETVEASFRYPMDFNYFIQNFSAVAYNREVKPGFESTVSYTF
LPSDQFAGRPFGLNIALAYRDANGIQYNEAVFNETVLISEVDEGLDGETF
FLYVLLAGIVVLLLVIGQQYLLGSSGKRKRAAAKKVIETGTANDSTIDYD
WVPQETLRALQKSPPKSKTPKTSPKPTKPASPKAASQQSPKQRKVKRSAG
DDASFLDH

BO06868.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0320-PB 302 CG32701-PB 1..302 1..302 1547 100 Plus
l(1)G0320-PA 302 CG32701-PA 1..302 1..302 1547 100 Plus